BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0022.p (395 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA21.1 B3KA21_9BACI Extracellular solute-binding protein family 1 622 e-176 B1DAK4.1 B1DAK4_9BACL Extracellular solute-binding protein family 1 605 e-171 A6TTD0.1 A6TTD0_ALKMQ Extracellular solute-binding protein, fami... 578 e-163 Q2BBT3.1 Q2BBT3_9BACI Sugar ABC transporter sugar-binding protein 541 e-152 Q9K6P8.1 Q9K6P8_BACHD Sugar ABC transporter (Sugar-binding protein) 531 e-149 >B3KA21.1 B3KA21_9BACI Extracellular solute-binding protein family 1 Length = 441 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 295/395 (74%), Positives = 343/395 (86%), Gaps = 1/395 (0%) Query: 1 MMHLWPAGISAQQNKLVGQIIDDYQKDYPNVTIKQEVLENEQYKSKLKVLSASNELPDVG 60 MHLWPAG+SA QNK+V QII++YQK+ PNVTIKQEVL+NEQYK+KLKVLSASNELPDVG Sbjct: 48 FMHLWPAGVSAGQNKIVNQIIEEYQKENPNVTIKQEVLDNEQYKNKLKVLSASNELPDVG 107 Query: 61 ITWAAGFMEPYVKGGLFAPLDDVLDGEQLKDKFVPGTTEAFVVDGKTYALPIELNISPVY 120 +TWAAGF++PYV+G LFAP+DDVLDG QL DKFV GTTEA+ +DGKTYALP+E NI+PVY Sbjct: 108 VTWAAGFLKPYVEGNLFAPVDDVLDG-QLGDKFVAGTTEAYAIDGKTYALPLEFNIAPVY 166 Query: 121 YNKDIFAKYNLQVPATYNEFKHVVKKLSDNGVAPIALGNKDRWTGSLWYMYLADRIAGSD 180 YNK IF ++NL++P TY EFK VVK LSDNG+APIALGNKDRWTGSLWYMYLADRI G + Sbjct: 167 YNKAIFEQHNLEIPQTYEEFKTVVKTLSDNGIAPIALGNKDRWTGSLWYMYLADRIGGQE 226 Query: 181 TLKRATNGTGSFDDPGLIRAAVEVQTLVDMNAFNKGFNGLSNDEGKSEFVNEKAAMYLTG 240 L A +G+GSF D L++AA EVQ+LVD NAF KGFNGLSN+E KSEF+N KAAMY+ G Sbjct: 227 KLAGAISGSGSFKDESLVKAAAEVQSLVDGNAFVKGFNGLSNEEAKSEFLNGKAAMYMMG 286 Query: 241 TWELPNFTTNPDIRQEFKDKVKFFKFPTVDGGKGDINSWVGGPGVGLFVAESSKVKEEAK 300 TWELPNFTTN +I QEF+D V FFKFPTV+GGKGDINSWVGGPGVGLF+ E+SKVKEE+K Sbjct: 287 TWELPNFTTNEEIPQEFRDSVGFFKFPTVEGGKGDINSWVGGPGVGLFIGENSKVKEESK 346 Query: 301 AFVEYFVTKWGQDSVTTAGVIPATKVDTSNSELPHLYVDLLNELNHASSLTLFADVQMKP 360 FVEYFVTKWG+ SVT AGVIPATKVDTS ELP LY+DL +E+N ASS+TLFADVQM+ Sbjct: 347 KFVEYFVTKWGEQSVTGAGVIPATKVDTSTLELPQLYIDLFDEMNKASSITLFADVQMQA 406 Query: 361 GAAQVHLDMIQALFGKAVTPEQFAAKHKEAVDKQN 395 AA+ HL+MIQALFGKAVTPE+F+ +H A+ K N Sbjct: 407 NAAETHLNMIQALFGKAVTPEKFSEEHDAAISKGN 441 >B1DAK4.1 B1DAK4_9BACL Extracellular solute-binding protein family 1 Length = 448 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 287/395 (72%), Positives = 335/395 (84%), Gaps = 1/395 (0%) Query: 1 MMHLWPAGISAQQNKLVGQIIDDYQKDYPNVTIKQEVLENEQYKSKLKVLSASNELPDVG 60 MHLWP G+SA QNK+V QII+DYQK++PNVTIKQEVL+NEQYK+KLKVLSASN+LPDVG Sbjct: 55 FMHLWPEGVSAGQNKIVNQIINDYQKEHPNVTIKQEVLDNEQYKNKLKVLSASNQLPDVG 114 Query: 61 ITWAAGFMEPYVKGGLFAPLDDVLDGEQLKDKFVPGTTEAFVVDGKTYALPIELNISPVY 120 +TWAAGF++PYV G LF P+DD+L GE L KFV GTTEA+ +DGKTYALP+E NI+P+Y Sbjct: 115 VTWAAGFLKPYVDGKLFTPVDDLLSGE-LNGKFVAGTTEAYAIDGKTYALPLEFNIAPIY 173 Query: 121 YNKDIFAKYNLQVPATYNEFKHVVKKLSDNGVAPIALGNKDRWTGSLWYMYLADRIAGSD 180 YNK+IF KYNL++P TY +FK VVK L NGVAPIALGNKDRWTGSLWYMYLADRIAG + Sbjct: 174 YNKEIFKKYNLEIPTTYEQFKQVVKTLQGNGVAPIALGNKDRWTGSLWYMYLADRIAGQE 233 Query: 181 TLKRATNGTGSFDDPGLIRAAVEVQTLVDMNAFNKGFNGLSNDEGKSEFVNEKAAMYLTG 240 T+ A GT F DPGL +AA EVQ+LVD NAF KGFNGLSN+E KSEF+N AAMYL G Sbjct: 234 TVANAIKGTAKFTDPGLQQAASEVQSLVDANAFVKGFNGLSNEEAKSEFLNGNAAMYLMG 293 Query: 241 TWELPNFTTNPDIRQEFKDKVKFFKFPTVDGGKGDINSWVGGPGVGLFVAESSKVKEEAK 300 TWELPNFTTN DI Q F+D V FFKFPTV+GGKG+ +SWVGGPGVGLFV E+SKVKEEAK Sbjct: 294 TWELPNFTTNEDIPQSFRDSVGFFKFPTVEGGKGNADSWVGGPGVGLFVGENSKVKEEAK 353 Query: 301 AFVEYFVTKWGQDSVTTAGVIPATKVDTSNSELPHLYVDLLNELNHASSLTLFADVQMKP 360 AFV+YFVTKWG+ SVT AGVIPATK+DTS+ +LP LY+DL NELN ASS+TLFADVQ+ Sbjct: 354 AFVQYFVTKWGEQSVTGAGVIPATKIDTSSIQLPQLYIDLFNELNKASSITLFADVQLPA 413 Query: 361 GAAQVHLDMIQALFGKAVTPEQFAAKHKEAVDKQN 395 AA+ HL+MIQ+LFGKAV PE+FA++ A+ K N Sbjct: 414 NAAETHLNMIQSLFGKAVKPEKFASEQDAAIAKGN 448 >A6TTD0.1 A6TTD0_ALKMQ Extracellular solute-binding protein, family 1 Length = 441 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 272/390 (69%), Positives = 323/390 (82%), Gaps = 1/390 (0%) Query: 2 MHLWPAGISAQQNKLVGQIIDDYQKDYPNVTIKQEVLENEQYKSKLKVLSASNELPDVGI 61 MHLWPAG S QQN +V +II++YQ P+V I QEVLENEQYK+KL+V+SASNELPDVG+ Sbjct: 48 MHLWPAGSSRQQNMIVNEIIEEYQTANPHVKIVQEVLENEQYKTKLQVISASNELPDVGM 107 Query: 62 TWAAGFMEPYVKGGLFAPLDDVLDGEQLKDKFVPGTTEAFVVDGKTYALPIELNISPVYY 121 TW AGFMEPYVKG F PLDD+L G LK+ FV GTTEA+ VDGKTYA P+ELNI P+YY Sbjct: 108 TWPAGFMEPYVKGNRFTPLDDLLKG-GLKESFVAGTTEAYAVDGKTYAFPLELNIVPLYY 166 Query: 122 NKDIFAKYNLQVPATYNEFKHVVKKLSDNGVAPIALGNKDRWTGSLWYMYLADRIAGSDT 181 NK IFA+YNL+VP TY +FKHVVK L DN V PIALGNKDRWTGSLWYMYLADR+ G + Sbjct: 167 NKSIFAEYNLEVPETYEDFKHVVKTLVDNNVVPIALGNKDRWTGSLWYMYLADRLGGPEI 226 Query: 182 LKRATNGTGSFDDPGLIRAAVEVQTLVDMNAFNKGFNGLSNDEGKSEFVNEKAAMYLTGT 241 L A N +G+F+D L++AA EVQTLVDMNAF +GFNGLSNDEGKSEF+NEKAAMYL G+ Sbjct: 227 LTNAINRSGTFEDESLVKAAEEVQTLVDMNAFVRGFNGLSNDEGKSEFLNEKAAMYLMGS 286 Query: 242 WELPNFTTNPDIRQEFKDKVKFFKFPTVDGGKGDINSWVGGPGVGLFVAESSKVKEEAKA 301 WELPNFTTN +I QEF+D V +FKFPTV+GGKGDI+SWVGGPGVGLFVAE+S VKEE+K Sbjct: 287 WELPNFTTNEEIPQEFRDNVGYFKFPTVEGGKGDIDSWVGGPGVGLFVAENSSVKEESKK 346 Query: 302 FVEYFVTKWGQDSVTTAGVIPATKVDTSNSELPHLYVDLLNELNHASSLTLFADVQMKPG 361 FV++FV WG+ +V AGV PAT VDT+ ELP LY+D+LN+L AS++TLFADVQM Sbjct: 347 FVKFFVESWGEQAVVRAGVTPATAVDTTALELPQLYIDVLNDLGRASNMTLFADVQMSAA 406 Query: 362 AAQVHLDMIQALFGKAVTPEQFAAKHKEAV 391 A+ HL+MIQ+LFG VTPE +A +H+EA+ Sbjct: 407 VAETHLNMIQSLFGNQVTPEDYAKRHEEAL 436 >Q2BBT3.1 Q2BBT3_9BACI Sugar ABC transporter sugar-binding protein Length = 433 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 257/394 (65%), Positives = 316/394 (80%), Gaps = 2/394 (0%) Query: 1 MMHLWPAGISAQQNKLVGQIIDDYQKDYPNVTIKQEVLENEQYKSKLKVLSASNELPDVG 60 MHLWP G S N++V II+D++ ++P+V + EVL NEQYK KLKVLS SN+LPDVG Sbjct: 42 FMHLWPEGSSKLHNEIVSGIIEDFESEHPDVKVDLEVLSNEQYKDKLKVLSTSNQLPDVG 101 Query: 61 ITWAAGFMEPYVKGGLFAPLDDVLDGEQLKDKFVPGTTEAFVVDGKTYALPIELNISPVY 120 +TWAAGF++PYV G F PLDD+L+G+ LKDKFV GT EA+ VDG TY LP+ELNI+ V+ Sbjct: 102 LTWAAGFLDPYVSGKKFTPLDDLLEGD-LKDKFVSGTAEAYEVDGSTYGLPLELNIATVF 160 Query: 121 YNKDIFAKYNLQVPATYNEFKHVVKKLSDNGVAPIALGNKDRWTGSLWYMYLADRIAGSD 180 YNK IF KY L+ P TY EF++VV+ L NGVAPIALGNKDRWTGSLWYMYLADRI G D Sbjct: 161 YNKAIFEKYGLEAPKTYEEFQNVVETLDKNGVAPIALGNKDRWTGSLWYMYLADRIGGGD 220 Query: 181 TLKRATNGTGSFDDPGLIRAAVEVQTLVDMNAFNKGFNGLSNDEGKSEFVNEKAAMYLTG 240 L +A + +GSF+DP L+ AA +VQ LVDMNAF KGFNGL+++E KS F+NE+AAMYL Sbjct: 221 VLTKAIDRSGSFEDPALVSAAEKVQELVDMNAFVKGFNGLADEEAKSMFMNEQAAMYLIA 280 Query: 241 TWELPNFTTNPDIRQEFKDKVKFFKFPTVDGGKGDINSWVGGPGVGLFVAESSKVKEEAK 300 TW+LPN+TTN D+ QEF+D V +F FPTVD GKGD++S+VGGPGVGLFVAE S VKEEAK Sbjct: 281 TWDLPNYTTNEDVPQEFRDSVGYFNFPTVD-GKGDMDSFVGGPGVGLFVAEDSDVKEEAK 339 Query: 301 AFVEYFVTKWGQDSVTTAGVIPATKVDTSNSELPHLYVDLLNELNHASSLTLFADVQMKP 360 F YF+ +WG+ SVT AGVIPATKVD ++ +LP +YVD+L +LN AS++TLFADVQM Sbjct: 340 EFASYFIQQWGEKSVTDAGVIPATKVDAASLDLPDMYVDVLEDLNSASNITLFADVQMSA 399 Query: 361 GAAQVHLDMIQALFGKAVTPEQFAAKHKEAVDKQ 394 AQVHLDMIQ+LFGK V+PE FA H+EA+ K+ Sbjct: 400 DTAQVHLDMIQSLFGKEVSPEDFAKAHEEALSKE 433 >Q9K6P8.1 Q9K6P8_BACHD Sugar ABC transporter (Sugar-binding protein) Length = 438 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 241/395 (61%), Positives = 317/395 (80%), Gaps = 1/395 (0%) Query: 1 MMHLWPAGISAQQNKLVGQIIDDYQKDYPNVTIKQEVLENEQYKSKLKVLSASNELPDVG 60 MHLWP G S N++V QII +++ D P++T++ EVLENEQYK+KL+V+S+SN+LPDVG Sbjct: 45 FMHLWPQGSSPDHNRIVNQIISEFEADNPHITVELEVLENEQYKNKLQVISSSNQLPDVG 104 Query: 61 ITWAAGFMEPYVKGGLFAPLDDVLDGEQLKDKFVPGTTEAFVVDGKTYALPIELNISPVY 120 +TW AGF+EPYV G LF PLDD+L+ + L+++FV GT EA+ +DG+ YALP+ELNI+PV+ Sbjct: 105 MTWPAGFLEPYVNGKLFTPLDDILE-DGLREQFVAGTVEAYEIDGQAYALPLELNIAPVF 163 Query: 121 YNKDIFAKYNLQVPATYNEFKHVVKKLSDNGVAPIALGNKDRWTGSLWYMYLADRIAGSD 180 YNK IF +Y L+ P TY EF HVV L +NGV PIALGN+DRWTGSLWYMY+A+RI G+D Sbjct: 164 YNKAIFDEYGLEAPETYEEFIHVVDTLVENGVTPIALGNRDRWTGSLWYMYMAERIGGAD 223 Query: 181 TLKRATNGTGSFDDPGLIRAAVEVQTLVDMNAFNKGFNGLSNDEGKSEFVNEKAAMYLTG 240 L A + +GSF+D LI AA +Q L+D +AF +GFNGLS+ E K+EF+N AAMYL G Sbjct: 224 ALNSAIDRSGSFEDERLIDAAAHIQELIDRDAFIRGFNGLSDQEAKAEFMNGGAAMYLIG 283 Query: 241 TWELPNFTTNPDIRQEFKDKVKFFKFPTVDGGKGDINSWVGGPGVGLFVAESSKVKEEAK 300 +W+LPN+TTN ++ QEF+D + FFKFPT+DGG+GDINSWVGGPGVGLFVAE+S VKEEAK Sbjct: 284 SWDLPNYTTNEEVPQEFRDGISFFKFPTIDGGEGDINSWVGGPGVGLFVAENSDVKEEAK 343 Query: 301 AFVEYFVTKWGQDSVTTAGVIPATKVDTSNSELPHLYVDLLNELNHASSLTLFADVQMKP 360 FV+YF+ +WG+ SV AGVIP T+V+T +LP L++D+L+ELNHAS +TLFADVQM Sbjct: 344 QFVKYFIEEWGKYSVEDAGVIPGTQVNTDEVDLPDLFIDVLDELNHASDITLFADVQMSA 403 Query: 361 GAAQVHLDMIQALFGKAVTPEQFAAKHKEAVDKQN 395 A+ HL+MIQ+LFG VTPE FA +H++A+ ++ Sbjct: 404 SVAETHLNMIQSLFGHEVTPEAFAEEHEKALSAED 438 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,532,358,667 Number of extensions: 114197495 Number of successful extensions: 223054 Number of sequences better than 1.0e-05: 1500 Number of HSP's gapped: 222668 Number of HSP's successfully gapped: 1500 Length of query: 395 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 257 Effective length of database: 1,760,596,133 Effective search space: 452473206181 Effective search space used: 452473206181 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)