BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0019.p (461 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3B0I0.1 C3B0I0_BACMY Putative uncharacterized protein 542 e-152 C3AIR9.1 C3AIR9_BACMY Putative uncharacterized protein 542 e-152 A7GM77.1 A7GM77_BACCN MATE efflux family protein 541 e-152 C3BHA9.1 C3BHA9_9BACI Putative uncharacterized protein 541 e-152 C2S0I0.1 C2S0I0_BACCE Putative uncharacterized protein 529 e-148 >C3B0I0.1 C3B0I0_BACMY Putative uncharacterized protein Length = 469 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 266/445 (59%), Positives = 335/445 (75%) Query: 2 NQTKHQEFNLVKLTWPIFLELFLFMLMGSVDTFMIXXXXXXXXXXXXXXNQXXXXXXXXX 61 + + ++ NL LTWPIFLE+FLFMLMG DTFM+ NQ Sbjct: 11 KKGQGEKLNLFFLTWPIFLEVFLFMLMGIADTFMLSALSDDAVSGVGAANQYLHIAILVL 70 Query: 62 XXXGNGAAIVVSQYLGSRKPKEAAEVTGNAVTLNLAVGIIFSTAILVFGEALLRALNVTG 121 GNGAAIVVSQYLGS++ EA++++ AVTLNL VG+I S L+F + ++ +N+ G Sbjct: 71 EVIGNGAAIVVSQYLGSKRYMEASKISALAVTLNLGVGLIISAGFLLFSKNMMMEMNLQG 130 Query: 122 DILIHAKVYIHIVGGGIFLQALINALATTIRTYGFTKQTMMVSLLMNLIHVAGNYLLIFG 181 D+L +A+ Y+ IVGG IFLQA+IN+LA IR +GFTKQ M++SL MN+ H+AGNY+LIFG Sbjct: 131 DVLTYAQNYLSIVGGAIFLQAIINSLAAIIRVHGFTKQAMLISLGMNIFHIAGNYVLIFG 190 Query: 182 HFGLPALGVQGAAISTVASRLICLVIFFLLLYRIMEVRVKLAYYIHLSKKYVLQILKIGI 241 FG P +GVQGAAIS+ SRLI L++FF LLYR+ME RVKL YYI LSK+Y+ +ILKIGI Sbjct: 191 KFGFPEMGVQGAAISSSFSRLIALIVFFWLLYRVMEYRVKLNYYITLSKEYIGKILKIGI 250 Query: 242 PSAFESVIYQSCQLIFTLYITYLGAEAMATRQYALNISNYIYLFSVAVAMGTSIIVGHLV 301 PSAFE V+YQ+CQ++F Y TYLGAE++A RQYA NIS + YLF++A+ MGT+IIVG LV Sbjct: 251 PSAFEQVMYQACQIVFLYYATYLGAESLAARQYATNISMFTYLFAIAIGMGTAIIVGRLV 310 Query: 302 GARRPEEAYKRVFKSVKWALLVTVIIDVAVIFFRVPLMGLFTDNLEIIALGAQVILLSIF 361 G +EAY RV+KSVKWA+ VT+ + + VI FR LMGLFTDN +IALGA V+LLSI Sbjct: 311 GGNEKDEAYVRVWKSVKWAIGVTLCMVILVITFRTQLMGLFTDNPHVIALGATVLLLSIL 370 Query: 362 LETGRTCNLVIINSLRASGDAKFPVYMGFISMVCISLPLGYVLVFQLHLGLAGVWLATAA 421 LETGRT N+VIINSLRA+GDAK+PV +G SMV +SLPLGY VF LH+GL G+WLA A Sbjct: 371 LETGRTMNIVIINSLRAAGDAKYPVLIGAFSMVLMSLPLGYFFVFYLHMGLPGIWLAIAI 430 Query: 422 DEWLRAVIMFFRWKSRAWVKHRLIE 446 DEW RA+IMFFRWKSRAW + L++ Sbjct: 431 DEWTRAIIMFFRWKSRAWENYALVK 455 >C3AIR9.1 C3AIR9_BACMY Putative uncharacterized protein Length = 469 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 266/445 (59%), Positives = 335/445 (75%) Query: 2 NQTKHQEFNLVKLTWPIFLELFLFMLMGSVDTFMIXXXXXXXXXXXXXXNQXXXXXXXXX 61 + + ++ NL LTWPIFLE+FLFMLMG DTFM+ NQ Sbjct: 11 KKGQGEKLNLFFLTWPIFLEVFLFMLMGIADTFMLSALSDDAVSGVGAANQYLHIAILVL 70 Query: 62 XXXGNGAAIVVSQYLGSRKPKEAAEVTGNAVTLNLAVGIIFSTAILVFGEALLRALNVTG 121 GNGAAIVVSQYLGS++ EA++++ AVTLNL VG+I S L+F + ++ +N+ G Sbjct: 71 EVIGNGAAIVVSQYLGSKRYMEASKISALAVTLNLGVGLIISAGFLLFSKNMMMEMNLQG 130 Query: 122 DILIHAKVYIHIVGGGIFLQALINALATTIRTYGFTKQTMMVSLLMNLIHVAGNYLLIFG 181 D+L +A+ Y+ IVGG IFLQA+IN+LA IR +GFTKQ M++SL MN+ H+AGNY+LIFG Sbjct: 131 DVLTYAQNYLSIVGGAIFLQAIINSLAAIIRVHGFTKQAMLISLGMNIFHIAGNYVLIFG 190 Query: 182 HFGLPALGVQGAAISTVASRLICLVIFFLLLYRIMEVRVKLAYYIHLSKKYVLQILKIGI 241 FG P +GVQGAAIS+ SRLI L++FF LLYR+ME RVKL YYI LSK+Y+ +ILKIGI Sbjct: 191 KFGFPEMGVQGAAISSSFSRLIALIVFFWLLYRVMEYRVKLNYYITLSKEYIGKILKIGI 250 Query: 242 PSAFESVIYQSCQLIFTLYITYLGAEAMATRQYALNISNYIYLFSVAVAMGTSIIVGHLV 301 PSAFE V+YQ+CQ++F Y TYLGAE++A RQYA NIS + YLF++A+ MGT+IIVG LV Sbjct: 251 PSAFEQVMYQACQIVFLYYATYLGAESLAARQYATNISMFTYLFAIAIGMGTAIIVGRLV 310 Query: 302 GARRPEEAYKRVFKSVKWALLVTVIIDVAVIFFRVPLMGLFTDNLEIIALGAQVILLSIF 361 G +EAY RV+KSVKWA+ VT+ + + VI FR LMGLFTDN +IALGA V+LLSI Sbjct: 311 GGNEKDEAYVRVWKSVKWAIGVTLCMVILVITFRTQLMGLFTDNPHVIALGATVLLLSIL 370 Query: 362 LETGRTCNLVIINSLRASGDAKFPVYMGFISMVCISLPLGYVLVFQLHLGLAGVWLATAA 421 LETGRT N+VIINSLRA+GDAK+PV +G SMV +SLPLGY VF LH+GL G+WLA A Sbjct: 371 LETGRTMNIVIINSLRAAGDAKYPVLIGAFSMVLMSLPLGYFFVFYLHMGLPGIWLAIAI 430 Query: 422 DEWLRAVIMFFRWKSRAWVKHRLIE 446 DEW RA+IMFFRWKSRAW + L++ Sbjct: 431 DEWTRAIIMFFRWKSRAWENYALVK 455 >A7GM77.1 A7GM77_BACCN MATE efflux family protein Length = 463 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 264/445 (59%), Positives = 335/445 (75%) Query: 2 NQTKHQEFNLVKLTWPIFLELFLFMLMGSVDTFMIXXXXXXXXXXXXXXNQXXXXXXXXX 61 K ++ NL LTWPIFLE+FLFMLMG DTFM+ NQ Sbjct: 7 KDIKEEKLNLFFLTWPIFLEVFLFMLMGIADTFMLSALSDDAVSGVGAANQYLHIAILVL 66 Query: 62 XXXGNGAAIVVSQYLGSRKPKEAAEVTGNAVTLNLAVGIIFSTAILVFGEALLRALNVTG 121 GNGAAIVVSQYLGS++ EA++++ AVTLNL VG++ S L+F + ++ A+N+ G Sbjct: 67 EVIGNGAAIVVSQYLGSKRYMEASKISALAVTLNLVVGLVISAGFLLFAKHMMAAMNLQG 126 Query: 122 DILIHAKVYIHIVGGGIFLQALINALATTIRTYGFTKQTMMVSLLMNLIHVAGNYLLIFG 181 D+LI+A+ Y+ IVGG IFLQA+IN+LA IR +GFTKQ M +S MN++H+AGNY+LIFG Sbjct: 127 DVLIYAQNYLSIVGGAIFLQAIINSLAAIIRVHGFTKQAMFISFGMNILHIAGNYMLIFG 186 Query: 182 HFGLPALGVQGAAISTVASRLICLVIFFLLLYRIMEVRVKLAYYIHLSKKYVLQILKIGI 241 FG+P LGVQGAAIS+ SRLI L++FF LLYR+ME RVKL YY LSK+YV +ILKIGI Sbjct: 187 KFGMPELGVQGAAISSAFSRLIALIVFFWLLYRVMEYRVKLTYYFTLSKEYVGKILKIGI 246 Query: 242 PSAFESVIYQSCQLIFTLYITYLGAEAMATRQYALNISNYIYLFSVAVAMGTSIIVGHLV 301 PSAFE V+YQ+CQ++F Y TYLGA+++A RQYA NIS + YLF++A+ MGT+IIVG LV Sbjct: 247 PSAFEQVMYQACQIVFLYYATYLGADSLAARQYATNISMFTYLFAIAIGMGTAIIVGRLV 306 Query: 302 GARRPEEAYKRVFKSVKWALLVTVIIDVAVIFFRVPLMGLFTDNLEIIALGAQVILLSIF 361 G + +EAY RV+KSVKWAL VT+ + + VI FR+ LM LFT N ++IALGA V+LLSI Sbjct: 307 GGSKQDEAYVRVWKSVKWALFVTLCMVILVITFRIQLMQLFTHNPDVIALGATVLLLSIL 366 Query: 362 LETGRTCNLVIINSLRASGDAKFPVYMGFISMVCISLPLGYVLVFQLHLGLAGVWLATAA 421 LETGRT N+VIINSLRA+GDAK+PV +G SMV +SLPLGY VF LH+GL G+WLA A Sbjct: 367 LETGRTMNIVIINSLRAAGDAKYPVLIGAFSMVLMSLPLGYFFVFYLHMGLPGIWLAIAI 426 Query: 422 DEWLRAVIMFFRWKSRAWVKHRLIE 446 DEW RA+IMFFRW+SR W + L++ Sbjct: 427 DEWTRAIIMFFRWRSRLWENYALVK 451 >C3BHA9.1 C3BHA9_9BACI Putative uncharacterized protein Length = 467 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 265/445 (59%), Positives = 335/445 (75%) Query: 2 NQTKHQEFNLVKLTWPIFLELFLFMLMGSVDTFMIXXXXXXXXXXXXXXNQXXXXXXXXX 61 + + ++ NL LTWPIFLE+FLFMLMG DTFM+ NQ Sbjct: 11 KKGQEEKLNLFFLTWPIFLEVFLFMLMGIADTFMLSALSDDAVSGVGAANQYLHIAILVL 70 Query: 62 XXXGNGAAIVVSQYLGSRKPKEAAEVTGNAVTLNLAVGIIFSTAILVFGEALLRALNVTG 121 GNGAAIVVSQYLGS++ EA++++ AVTLNL VG+I S L+F + ++ +N+ G Sbjct: 71 EVIGNGAAIVVSQYLGSKRYMEASKISALAVTLNLGVGLIISAGFLLFSKNMMMTMNLQG 130 Query: 122 DILIHAKVYIHIVGGGIFLQALINALATTIRTYGFTKQTMMVSLLMNLIHVAGNYLLIFG 181 D+L +A+ Y+ IVGG IFLQA+IN+LA IR +GFTKQ M++SL MN+ H+AGNY+LIFG Sbjct: 131 DVLTYAQNYLSIVGGAIFLQAIINSLAAIIRVHGFTKQAMLISLGMNIFHIAGNYVLIFG 190 Query: 182 HFGLPALGVQGAAISTVASRLICLVIFFLLLYRIMEVRVKLAYYIHLSKKYVLQILKIGI 241 FG P +GVQGAAIS+ SRLI L++FF LLYR+ME RVKL YYI LSK+Y+ +ILKIGI Sbjct: 191 KFGFPEMGVQGAAISSSFSRLIALIVFFWLLYRVMEYRVKLNYYITLSKEYIGKILKIGI 250 Query: 242 PSAFESVIYQSCQLIFTLYITYLGAEAMATRQYALNISNYIYLFSVAVAMGTSIIVGHLV 301 PSAFE V+YQ+CQ++F Y TYLGAE++A RQYA NIS + YLF++A+ MGT+IIVG LV Sbjct: 251 PSAFEQVMYQACQIVFLYYATYLGAESLAARQYATNISMFTYLFAIAIGMGTAIIVGRLV 310 Query: 302 GARRPEEAYKRVFKSVKWALLVTVIIDVAVIFFRVPLMGLFTDNLEIIALGAQVILLSIF 361 G +EAY RV+KSVKWA+ VT+ + + VI FR LMGLFTDN +IALGA V+LLSI Sbjct: 311 GGNEKDEAYVRVWKSVKWAIGVTLCMVILVITFRTQLMGLFTDNPHVIALGATVLLLSIL 370 Query: 362 LETGRTCNLVIINSLRASGDAKFPVYMGFISMVCISLPLGYVLVFQLHLGLAGVWLATAA 421 LETGRT N+VIINSLRA+GDAK+PV +G SMV +SLPLGY VF L++GL G+WLA A Sbjct: 371 LETGRTMNIVIINSLRAAGDAKYPVLIGAFSMVLMSLPLGYFFVFYLYMGLPGIWLAIAI 430 Query: 422 DEWLRAVIMFFRWKSRAWVKHRLIE 446 DEW RA+IMFFRWKSRAW + L++ Sbjct: 431 DEWTRAIIMFFRWKSRAWENYALVK 455 >C2S0I0.1 C2S0I0_BACCE Putative uncharacterized protein Length = 481 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/440 (59%), Positives = 333/440 (75%) Query: 7 QEFNLVKLTWPIFLELFLFMLMGSVDTFMIXXXXXXXXXXXXXXNQXXXXXXXXXXXXGN 66 ++ +L LTWPIFLE+FLFMLMG DTFM+ NQ GN Sbjct: 29 EKLSLFLLTWPIFLEVFLFMLMGIADTFMLSALSDDAVSGVGAANQYLHIAILVLEVIGN 88 Query: 67 GAAIVVSQYLGSRKPKEAAEVTGNAVTLNLAVGIIFSTAILVFGEALLRALNVTGDILIH 126 GAAIVVSQYLGS++ EA++++ AVTLNL VG++ S L+F + ++ A+N+ GD+L++ Sbjct: 89 GAAIVVSQYLGSKRFMEASKISALAVTLNLVVGLVISAGFLLFSKHMMMAMNLQGDVLMY 148 Query: 127 AKVYIHIVGGGIFLQALINALATTIRTYGFTKQTMMVSLLMNLIHVAGNYLLIFGHFGLP 186 A+ Y+ IVGG IFLQA+IN+LA IR +GFTKQ M +SL MN+IH+AGNY+LIFG FG P Sbjct: 149 AQSYLSIVGGAIFLQAIINSLAAIIRVHGFTKQAMFISLGMNIIHIAGNYVLIFGKFGFP 208 Query: 187 ALGVQGAAISTVASRLICLVIFFLLLYRIMEVRVKLAYYIHLSKKYVLQILKIGIPSAFE 246 LGVQGAAIS+ SRLI L++FFLLLYR+ME RVKL YY LSK+Y+ +ILKIGIPSAFE Sbjct: 209 ELGVQGAAISSAVSRLIALIVFFLLLYRVMEYRVKLQYYFTLSKEYIGKILKIGIPSAFE 268 Query: 247 SVIYQSCQLIFTLYITYLGAEAMATRQYALNISNYIYLFSVAVAMGTSIIVGHLVGARRP 306 V+YQ+CQ++F Y TYLG E++A RQYA NIS + YLF++A+ MGT+II+G LVG Sbjct: 269 QVMYQACQIVFLYYATYLGTESLAARQYATNISMFTYLFAIAIGMGTAIIIGRLVGGGEK 328 Query: 307 EEAYKRVFKSVKWALLVTVIIDVAVIFFRVPLMGLFTDNLEIIALGAQVILLSIFLETGR 366 +EAY+RV+KSVKWA+ VT+ + VI FR LMGLFTDN IIALGA V+LLS+ LETGR Sbjct: 329 DEAYERVWKSVKWAIGVTLCMVALVITFRTQLMGLFTDNPHIIALGASVLLLSVLLETGR 388 Query: 367 TCNLVIINSLRASGDAKFPVYMGFISMVCISLPLGYVLVFQLHLGLAGVWLATAADEWLR 426 T N+VIINSLRA+GDAK+PV +G SMV +SLPLGY F L +GL G+WLA A DEW R Sbjct: 389 TMNIVIINSLRAAGDAKYPVLIGAFSMVLMSLPLGYFFAFHLDMGLVGIWLAIAIDEWTR 448 Query: 427 AVIMFFRWKSRAWVKHRLIE 446 A+IMFFRWKSRAW ++ L++ Sbjct: 449 AIIMFFRWKSRAWERYALVK 468 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.143 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,224,758,846 Number of extensions: 82946156 Number of successful extensions: 296050 Number of sequences better than 1.0e-05: 4254 Number of HSP's gapped: 289318 Number of HSP's successfully gapped: 4390 Length of query: 461 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 322 Effective length of database: 1,751,175,118 Effective search space: 563878387996 Effective search space used: 563878387996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 133 (55.8 bits)