BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0017.p
         (114 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2B6W0.1 Q2B6W0_9BACI 6-phospho-3-hexuloisomerase (PHI)               106   5e-22
B1DFB2.1 B1DFB2_9BACL 6-phospho 3-hexuloisomerase                     104   2e-21
Q6TV53.1 Q6TV53_BACMT 6-phospho-3-hexuloisomerase                     100   5e-20
Q8EMN5.1 Q8EMN5_OCEIH Hypothetical conserved protein                   97   6e-19
P42404.1 PHI_BACSU 3-hexulose-6-phosphate isomerase EC=5.3.1.27        94   4e-18

>Q2B6W0.1 Q2B6W0_9BACI 6-phospho-3-hexuloisomerase (PHI)
          Length = 186

 Score =  106 bits (265), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 65/97 (67%)

Query: 1  MNTFSYAQEIVNELQRSVXXXXXXXXXXXXXXXXRSGRVFVAGAGRSGLMGRAFAMRLMH 60
          M+T  Y ++I+NEL+ +                  SG+VF AGAGRSG M ++FAMRLMH
Sbjct: 2  MDTIEYLKKILNELEHAAEAIDPGQAEALASQILESGKVFTAGAGRSGFMAKSFAMRLMH 61

Query: 61 AGKDAYVVGETVTPGIGPGDVLVLGTGSGETASLLSM 97
           G DAYV+GETVTPG    D+L++G+GSGET SL+SM
Sbjct: 62 MGVDAYVIGETVTPGFEENDLLIIGSGSGETKSLVSM 98


>B1DFB2.1 B1DFB2_9BACL 6-phospho 3-hexuloisomerase
          Length = 183

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 66/97 (68%)

Query: 1  MNTFSYAQEIVNELQRSVXXXXXXXXXXXXXXXXRSGRVFVAGAGRSGLMGRAFAMRLMH 60
          M+T S A  I+ EL+R++                 + ++FVAGAGRSGLM RAFAMRLMH
Sbjct: 1  MSTLSAASSILQELERTLEAVKPSEIEALTKRITEADKIFVAGAGRSGLMMRAFAMRLMH 60

Query: 61 AGKDAYVVGETVTPGIGPGDVLVLGTGSGETASLLSM 97
           G  AYVVGETVTPGI  GD+L++G+GSGET +L SM
Sbjct: 61 MGFRAYVVGETVTPGIAEGDLLLIGSGSGETKTLTSM 97


>Q6TV53.1 Q6TV53_BACMT 6-phospho-3-hexuloisomerase
          Length = 184

 Score =  100 bits (248), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 62/97 (63%)

Query: 1  MNTFSYAQEIVNELQRSVXXXXXXXXXXXXXXXXRSGRVFVAGAGRSGLMGRAFAMRLMH 60
          M T  +  EIV EL  SV                +S +VFVAGAGRSG M ++FAMR+MH
Sbjct: 1  MLTTEFLAEIVKELNSSVNQIADEEAEALVNGILQSKKVFVAGAGRSGFMAKSFAMRMMH 60

Query: 61 AGKDAYVVGETVTPGIGPGDVLVLGTGSGETASLLSM 97
           G DAYVVGETVTP     D+L++G+GSGET SL+SM
Sbjct: 61 MGIDAYVVGETVTPNYEKEDILIIGSGSGETKSLVSM 97


>Q8EMN5.1 Q8EMN5_OCEIH Hypothetical conserved protein
          Length = 185

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 62/97 (63%)

Query: 1  MNTFSYAQEIVNELQRSVXXXXXXXXXXXXXXXXRSGRVFVAGAGRSGLMGRAFAMRLMH 60
          M T  YA EIV EL +S+                 S ++FVAGAGRSG +G++F MR+MH
Sbjct: 1  MKTTQYAFEIVQELTQSLQLISENEAEKLMESITESNKIFVAGAGRSGFIGKSFVMRMMH 60

Query: 61 AGKDAYVVGETVTPGIGPGDVLVLGTGSGETASLLSM 97
           G DAY VGETVT  +   D+L++G+GSGET +L+S+
Sbjct: 61 MGIDAYAVGETVTANLKEDDLLIIGSGSGETKTLVSI 97


>P42404.1 PHI_BACSU 3-hexulose-6-phosphate isomerase EC=5.3.1.27
          Length = 185

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 60/95 (63%)

Query: 1  MNTFSYAQEIVNELQRSVXXXXXXXXXXXXXXXXRSGRVFVAGAGRSGLMGRAFAMRLMH 60
          M T  Y  EI+NEL  S                  S ++F AGAGRSGLM ++FAMRLMH
Sbjct: 1  MKTTEYVAEILNELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMH 60

Query: 61 AGKDAYVVGETVTPGIGPGDVLVLGTGSGETASLL 95
           G +A++VGE +TP +  GD++++G+GSGET SL+
Sbjct: 61 MGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLI 95


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 486,088,839
Number of extensions: 17442656
Number of successful extensions: 50478
Number of sequences better than 1.0e-05: 195
Number of HSP's gapped: 50502
Number of HSP's successfully gapped: 195
Length of query: 114
Length of database: 3,060,696,203
Length adjustment: 81
Effective length of query: 33
Effective length of database: 2,297,593,988
Effective search space: 75820601604
Effective search space used: 75820601604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)