BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0016.p
         (77 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q6TV53.1 Q6TV53_BACMT 6-phospho-3-hexuloisomerase                     105   1e-21
P42404.1 PHI_BACSU 3-hexulose-6-phosphate isomerase EC=5.3.1.27       105   2e-21
Q2B6W0.1 Q2B6W0_9BACI 6-phospho-3-hexuloisomerase (PHI)               103   5e-21
A7Z185.1 A7Z185_BACA2 HxlB                                            100   4e-20
Q70KK1.1 Q70KK1_BACAM HxlB protein                                    100   4e-20

>Q6TV53.1 Q6TV53_BACMT 6-phospho-3-hexuloisomerase
          Length = 184

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 63/76 (82%), Gaps = 1/76 (1%)

Query: 2   AVTLSPESSIGLLADHVVKLPGAPKEQADGGRITIQPMASLFEQTLLLFYDAVILRMMEE 61
           AVT++PES+IG LAD V+K+PG+PK++++  R TIQPM SLFEQTLLLFYDAVILR ME+
Sbjct: 110 AVTINPESTIGQLADIVIKMPGSPKDKSEA-RETIQPMGSLFEQTLLLFYDAVILRFMEK 168

Query: 62  TGQTSTRMFGNHANLE 77
            G  +  M+G HANLE
Sbjct: 169 KGLDTKTMYGRHANLE 184


>P42404.1 PHI_BACSU 3-hexulose-6-phosphate isomerase EC=5.3.1.27
          Length = 185

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 63/76 (82%)

Query: 2   AVTLSPESSIGLLADHVVKLPGAPKEQADGGRITIQPMASLFEQTLLLFYDAVILRMMEE 61
           A+T++PESSIG  AD ++++PG+PK+Q++G   TIQPM SLFEQTLLLFYDAVIL++ME+
Sbjct: 110 ALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEK 169

Query: 62  TGQTSTRMFGNHANLE 77
            G  S  MF +HANLE
Sbjct: 170 KGLDSETMFTHHANLE 185


>Q2B6W0.1 Q2B6W0_9BACI 6-phospho-3-hexuloisomerase (PHI)
          Length = 186

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 59/76 (77%)

Query: 2   AVTLSPESSIGLLADHVVKLPGAPKEQADGGRITIQPMASLFEQTLLLFYDAVILRMMEE 61
           A T+ P+SSI  LAD  VK+PGA K+Q +GG  TIQPM SLFEQ+LLL YDA+ILR+ME+
Sbjct: 111 AATIVPDSSIASLADITVKMPGATKDQNEGGLSTIQPMGSLFEQSLLLLYDAIILRVMEK 170

Query: 62  TGQTSTRMFGNHANLE 77
            G  S +MFG HANLE
Sbjct: 171 KGLDSAKMFGRHANLE 186


>A7Z185.1 A7Z185_BACA2 HxlB
          Length = 185

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 59/76 (77%)

Query: 2   AVTLSPESSIGLLADHVVKLPGAPKEQADGGRITIQPMASLFEQTLLLFYDAVILRMMEE 61
           A+T++P+SS+G LAD  + +PG+PKE+  G R TIQPM SLFEQTLLLFYDAVIL++ME+
Sbjct: 110 ALTINPDSSLGKLADLTITIPGSPKEETGGDRKTIQPMGSLFEQTLLLFYDAVILKIMEK 169

Query: 62  TGQTSTRMFGNHANLE 77
               S  MF  HANLE
Sbjct: 170 KELNSADMFTKHANLE 185


>Q70KK1.1 Q70KK1_BACAM HxlB protein
          Length = 185

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 59/76 (77%)

Query: 2   AVTLSPESSIGLLADHVVKLPGAPKEQADGGRITIQPMASLFEQTLLLFYDAVILRMMEE 61
           A+T++P+SS+G LAD  + +PG+PKE+  G R TIQPM SLFEQTLLLFYDAVIL++ME+
Sbjct: 110 ALTINPDSSLGKLADLTITIPGSPKEETGGDRKTIQPMGSLFEQTLLLFYDAVILKIMEK 169

Query: 62  TGQTSTRMFGNHANLE 77
               S  MF  HANLE
Sbjct: 170 KELNSADMFTKHANLE 185


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 418,644,085
Number of extensions: 12892952
Number of successful extensions: 24533
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 24528
Number of HSP's successfully gapped: 77
Length of query: 77
Length of database: 3,060,696,203
Length adjustment: 48
Effective length of query: 29
Effective length of database: 2,608,487,483
Effective search space: 75646137007
Effective search space used: 75646137007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)