BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0014.p
         (124 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJF2.1 B3KJF2_9BACI Helix-turn-helix HxlR type                      206   6e-52
B1DFB4.1 B1DFB4_9BACL Transcriptional regulator, HxlR family          181   1e-44
Q2B6V8.1 Q2B6V8_9BACI HxlR                                            161   2e-38
A8FFI3.1 A8FFI3_BACP2 Transcriptional regulator                       158   1e-37
P42406.3 HXLR_BACSU HTH-type transcriptional activator hxlR           157   3e-37

>B3KJF2.1 B3KJF2_9BACI Helix-turn-helix HxlR type
          Length = 139

 Score =  206 bits (524), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 107/118 (90%)

Query: 1   LATEIKDRINLKEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKML 60
           +A E+K RINLKEINC KELTLAVIGGKWKLIILWHLGLEG KRF EL ++IPHITQKML
Sbjct: 1   MANEVKQRINLKEINCHKELTLAVIGGKWKLIILWHLGLEGVKRFGELNRMIPHITQKML 60

Query: 61  TNQLRELEEDQLVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGENVIWKD 118
           TNQLRELEEDQLV R VY EVPPRVEYSLT YG+SL+P+L++MYDWGK+YGE VIWKD
Sbjct: 61  TNQLRELEEDQLVHRVVYPEVPPRVEYSLTPYGESLMPILKLMYDWGKDYGEQVIWKD 118


>B1DFB4.1 B1DFB4_9BACL Transcriptional regulator, HxlR family
          Length = 131

 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 104/115 (90%)

Query: 1   LATEIKDRINLKEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKML 60
           +A +I+ RI + +INCEKELTLA+IGGKWKLIILWHLG++GTKRFSEL+KLIPHITQK+L
Sbjct: 1   MAKDIRSRIEIDQINCEKELTLALIGGKWKLIILWHLGIDGTKRFSELQKLIPHITQKIL 60

Query: 61  TNQLRELEEDQLVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGENVI 115
           TNQLRELEEDQLV R VY  VPP+VEY LT +G+SL+P+L++MY+WGK+YGE V+
Sbjct: 61  TNQLRELEEDQLVERTVYPVVPPKVEYKLTPHGESLVPILKLMYNWGKHYGEEVL 115


>Q2B6V8.1 Q2B6V8_9BACI HxlR
          Length = 121

 Score =  161 bits (407), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 87/104 (83%)

Query: 12  KEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKMLTNQLRELEEDQ 71
           K  NCEKELTL+VIGGKWK+IILWHLG EGTKRF ELK LIP ITQ+ML NQLRELEED 
Sbjct: 7   KTFNCEKELTLSVIGGKWKMIILWHLGKEGTKRFGELKALIPGITQRMLVNQLRELEEDA 66

Query: 72  LVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGENVI 115
           +V R+VY  VPP+VEYSLTE G++L+P+L  MY WGKNY E VI
Sbjct: 67  IVHREVYPVVPPKVEYSLTEQGRTLMPILDSMYSWGKNYMETVI 110


>A8FFI3.1 A8FFI3_BACP2 Transcriptional regulator
          Length = 118

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 90/114 (78%)

Query: 5   IKDRINLKEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKMLTNQL 64
           +  R+  K  NCEKELTL +IGGKWK++ILWHLG EGTKRF ELK L+P ITQ+ML NQL
Sbjct: 3   LSSRMENKVFNCEKELTLNIIGGKWKMLILWHLGREGTKRFGELKSLMPGITQRMLVNQL 62

Query: 65  RELEEDQLVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGENVIWKD 118
           RELEED +V R+VY  VPP+VEYSLTE G+SL+P+L  MYDWGK Y ++   KD
Sbjct: 63  RELEEDHIVHREVYPVVPPKVEYSLTELGESLMPILEAMYDWGKQYLDSNFLKD 116


>P42406.3 HXLR_BACSU HTH-type transcriptional activator hxlR
          Length = 120

 Score =  157 bits (397), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 89/106 (83%)

Query: 7   DRINLKEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKMLTNQLRE 66
            R++ K  NCEKELTLAVIGGKWK++ILWHLG EGTKRF+ELK LIP ITQK+L NQLRE
Sbjct: 2   SRMDDKRFNCEKELTLAVIGGKWKMLILWHLGKEGTKRFNELKTLIPDITQKILVNQLRE 61

Query: 67  LEEDQLVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGE 112
           LE+D +V R+VY  VPP+VEYSLT +G+SL+P+L  MY+WGK Y E
Sbjct: 62  LEQDMIVHREVYPVVPPKVEYSLTPHGESLMPILEAMYEWGKGYME 107


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 779,454,929
Number of extensions: 28572698
Number of successful extensions: 73695
Number of sequences better than 1.0e-05: 2660
Number of HSP's gapped: 72742
Number of HSP's successfully gapped: 2661
Length of query: 124
Length of database: 3,060,696,203
Length adjustment: 90
Effective length of query: 34
Effective length of database: 2,212,804,853
Effective search space: 75235365002
Effective search space used: 75235365002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)