BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0013.p (378 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BF13.1 Q2BF13_9BACI NADH-dependent flavin oxidoreductase 487 e-135 A6CJB3.1 A6CJB3_9BACI NADH-dependent flavin oxidoreductase 481 e-134 A9QDS2.1 A9QDS2_9BACL NADH:flavin oxidoreductase/NADH oxidase 453 e-125 Q8ELB6.1 Q8ELB6_OCEIH NADH-dependent flavin oxidoreductase 437 e-120 C1PC77.1 C1PC77_BACCO NADH:flavin oxidoreductase/NADH oxidase 418 e-115 >Q2BF13.1 Q2BF13_9BACI NADH-dependent flavin oxidoreductase Length = 373 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/371 (63%), Positives = 277/371 (74%), Gaps = 5/371 (1%) Query: 6 YSPLLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITACVY 65 Y E F F S I +KNR+VMAPMTN SSNED TVS E YY RRSKG GMVITAC Y Sbjct: 5 YKQFFESFTFKSGIEVKNRLVMAPMTNFSSNEDDTVSDAEAAYYARRSKGPGMVITACTY 64 Query: 66 VSRGGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQPVG 125 V+ GKGF GEF +DE +PSL+RLAE I+ GAKA+LQIFHGGR+CPPE + +G V Sbjct: 65 VTENGKGFPGEFAGHKDEYVPSLKRLAEDIQAGGAKAILQIFHGGRECPPELVPNGDIVS 124 Query: 126 ASNVPSELPGGGHGPV-PRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQQ 184 AS V G G G PRAL+ +E+E II DFG AARRAIEAG+DGVEIHGANGYLLQQ Sbjct: 125 ASAVA----GSGEGKKEPRALSGEEVESIIKDFGEAARRAIEAGYDGVEIHGANGYLLQQ 180 Query: 185 FFSPHSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGIT 244 FFSPHSN R D+WGG L+KRL FPLAV+ VK V HA PF VGYRFSPEEPETPGIT Sbjct: 181 FFSPHSNRRDDQWGGSLEKRLTFPLAVVDEVKKTVAAHAKKPFAVGYRFSPEEPETPGIT 240 Query: 245 MSETFALIDALKEEGLDYLHVSQMDLWSRPHRGTGDSRPRIEQIVDRAGSGLPVIGVGSL 304 M++T LID L ++ LDYLHVS D WS P RG D+R RIE I +R GS +PVIGVGSL Sbjct: 241 MADTLVLIDELAKKDLDYLHVSLQDFWSAPRRGVEDTRSRIEIIQERVGSLVPVIGVGSL 300 Query: 305 YSADDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPLW 364 Y+ ++ K+ +G+ L+ALGR L+I+P+WVQKV EGR DEI T++D AQ L +PDPLW Sbjct: 301 YTPEEVEKAFGTGVPLIALGRELIIDPEWVQKVEEGREDEIKTKIDKDAQQELTVPDPLW 360 Query: 365 RALIHTPGWLP 375 +A+I+TPGW P Sbjct: 361 QAIINTPGWFP 371 >A6CJB3.1 A6CJB3_9BACI NADH-dependent flavin oxidoreductase Length = 373 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 225/373 (60%), Positives = 281/373 (75%), Gaps = 4/373 (1%) Query: 5 DYSPLLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITACV 64 +Y PL+EPFQF + LKNR+V+APMTN +SN DGTVS EIDYY+RRSKG GM ITAC Sbjct: 4 NYKPLVEPFQFKKGVELKNRIVLAPMTNFASNPDGTVSDTEIDYYIRRSKGVGMAITACT 63 Query: 65 YVSRGGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQPV 124 YV+ GKGF GEFGAD D++IPSL+RLA+A+K +G+KAVLQIFHGGR CPPE + +G V Sbjct: 64 YVTPSGKGFHGEFGADNDDMIPSLKRLADALKEKGSKAVLQIFHGGRACPPELVPNGDIV 123 Query: 125 GASNVPSELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQQ 184 AS V +E G PRAL E+E II+ FG A RRAI AGFDGVEIHGANGYL+QQ Sbjct: 124 SASAVAAE----GSEHTPRALGKTEVEDIISAFGEATRRAILAGFDGVEIHGANGYLIQQ 179 Query: 185 FFSPHSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGIT 244 FFSPHSN R D+WGG L+KR+ FPLAV++ VK +HA F++GYRFSPEEPETPGIT Sbjct: 180 FFSPHSNRRKDKWGGSLEKRMNFPLAVVQEVKKTAAEHADDSFIIGYRFSPEEPETPGIT 239 Query: 245 MSETFALIDALKEEGLDYLHVSQMDLWSRPHRGTGDSRPRIEQIVDRAGSGLPVIGVGSL 304 M +T L+D L ++ LDY+HVS MD WS P RG + RI+ +++ G P+IGVG + Sbjct: 240 MDDTLVLVDKLADQDLDYIHVSLMDFWSEPRRGVDSGKTRIQYLLETIGDRAPLIGVGGI 299 Query: 305 YSADDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPLW 364 ++ ++A+K++ +G+ L+ALGR L++EPDWVQKV EGR DEI L Q+ LVIPD LW Sbjct: 300 HTPEEAVKAIEAGVPLLALGRELIMEPDWVQKVEEGREDEIAATLSKNDQEKLVIPDYLW 359 Query: 365 RALIHTPGWLPVK 377 A+I+TPGW PVK Sbjct: 360 NAIINTPGWFPVK 372 >A9QDS2.1 A9QDS2_9BACL NADH:flavin oxidoreductase/NADH oxidase Length = 374 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/372 (60%), Positives = 271/372 (72%), Gaps = 5/372 (1%) Query: 5 DYSPLLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITACV 64 +Y PL E F F S + +KNR+VMAPMT+ SSN+DGTV+ E++YY RRS+GAGMVITAC+ Sbjct: 4 NYKPLFESFTFPSGVEVKNRIVMAPMTHSSSNDDGTVTDAELEYYARRSEGAGMVITACI 63 Query: 65 YVSRGGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQPV 124 YV+ GKGF GEF D D +IP L RLAE IK GAKA+LQIFHGGR+ PP + +G V Sbjct: 64 YVTPNGKGFPGEFAGDSDAMIPGLARLAETIKARGAKAILQIFHGGRRVPPALVPNGDVV 123 Query: 125 GASNVP-SELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQ 183 AS V +E P VPR L +EIE II DFG RRA AGFDGVEIHGAN YLLQ Sbjct: 124 SASAVAATESPD----VVPRELKHEEIEAIIRDFGETTRRAALAGFDGVEIHGANTYLLQ 179 Query: 184 QFFSPHSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGI 243 QF+SPHSN R+D+WGGD+ +RL FPLAV+ VK A +HA PFLVGYRFSPEEPETPG+ Sbjct: 180 QFYSPHSNRRNDQWGGDIDRRLTFPLAVVDEVKRAAAEHAKGPFLVGYRFSPEEPETPGL 239 Query: 244 TMSETFALIDALKEEGLDYLHVSQMDLWSRPHRGTGDSRPRIEQIVDRAGSGLPVIGVGS 303 TM +TF L+D L ++ LDYLHVS D S+P RG DS+ R+E + +R +PVIGVGS Sbjct: 240 TMEDTFRLLDELAQKDLDYLHVSLFDFRSKPSRGADDSKTRLEWVAERVAGRVPVIGVGS 299 Query: 304 LYSADDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPL 363 + SADDA+++ +GI LVA+GR LL +PDWVQKV GR DEI + L ++Q LVIPD L Sbjct: 300 INSADDAIEAQQTGIPLVAIGRVLLTDPDWVQKVETGREDEIQSRLSLSSQKKLVIPDGL 359 Query: 364 WRALIHTPGWLP 375 WR L GWLP Sbjct: 360 WRMLTAREGWLP 371 >Q8ELB6.1 Q8ELB6_OCEIH NADH-dependent flavin oxidoreductase Length = 373 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/368 (58%), Positives = 269/368 (73%), Gaps = 5/368 (1%) Query: 9 LLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITACVYVSR 68 + P F + + LKNR+VMAPMT+ SSN DGTVS EI YY RRSKG GMVITA YV+ Sbjct: 8 MFSPLTFKNGLELKNRLVMAPMTHYSSNPDGTVSDEEISYYARRSKGVGMVITATTYVTP 67 Query: 69 GGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQPVGASN 128 GKGF +F A D +IPSL +LA+ I+ EGAKA+LQIFHGG+ CPP + DG V ASN Sbjct: 68 NGKGFPNQFSAVEDGMIPSLSKLAKGIQNEGAKAILQIFHGGKMCPPSLIPDGDVVSASN 127 Query: 129 VPSELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQQFFSP 188 +P+ PR L + EIE II FG RRAIEAG+DGVEIHGANGYLLQQFFSP Sbjct: 128 IPA----NSEAAEPRPLKESEIEEIIEAFGETTRRAIEAGYDGVEIHGANGYLLQQFFSP 183 Query: 189 HSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGITMSET 248 SN R DR+GG L+KR+AFPLAV+ VKS V +HA + F+VGYRFSPEEPETPGITM ET Sbjct: 184 FSNRRDDRFGGSLEKRMAFPLAVIEKVKSVVAEHADASFIVGYRFSPEEPETPGITMDET 243 Query: 249 FALIDALKEEGLDYLHVSQMDLWSRPHRGTGD-SRPRIEQIVDRAGSGLPVIGVGSLYSA 307 +D L ++ LDYLHVS MD +S+ RG D ++ RI +++ + +P+IGVGS+Y+A Sbjct: 244 LQFVDVLADKQLDYLHVSLMDFFSKARRGVEDLNKTRISYLLETIDNRVPLIGVGSIYTA 303 Query: 308 DDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPLWRAL 367 +DA K+ ++GI L+A+GR ++I+PDWV+KVAEGR DEI TE++ Q+ LV+PDPLW + Sbjct: 304 EDARKAFNTGIPLLAIGREIIIDPDWVEKVAEGRDDEIITEINKDKQEELVVPDPLWNVI 363 Query: 368 IHTPGWLP 375 H PGW P Sbjct: 364 THAPGWFP 371 >C1PC77.1 C1PC77_BACCO NADH:flavin oxidoreductase/NADH oxidase Length = 372 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/372 (53%), Positives = 260/372 (69%), Gaps = 4/372 (1%) Query: 4 TDYSPLLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITAC 63 + Y L EP F S + +NR+VMAPMT+ SSN+DGT+S E+ YY R+KG GMV+TAC Sbjct: 2 SKYDKLFEPITFKSGVRAENRIVMAPMTHYSSNDDGTISAAELRYYAERAKGPGMVVTAC 61 Query: 64 VYVSRGGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQP 123 V+ GK F G+ GA DE++ S+++LA+ I+ GAKAV+QI HGGR+CP E + G Sbjct: 62 ANVTENGKAFTGQPGAHTDEMVESMKKLAQTIQQNGAKAVVQIHHGGRECPAELVPGGDV 121 Query: 124 VGASNVPSELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQ 183 V AS S G H RAL +E I+ FG A RR IEAGFDGVEIHGANGYL+Q Sbjct: 122 VSASETDSS-DGSVHA---RALTGEETAEIVKAFGEATRRVIEAGFDGVEIHGANGYLIQ 177 Query: 184 QFFSPHSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGI 243 QFFSP++N R D WGG L+KRLAFPLAV+ AVK V ++A PFLVGYR SPEEP PGI Sbjct: 178 QFFSPYTNRREDEWGGSLEKRLAFPLAVVDAVKKTVAEYADRPFLVGYRLSPEEPYEPGI 237 Query: 244 TMSETFALIDALKEEGLDYLHVSQMDLWSRPHRGTGDSRPRIEQIVDRAGSGLPVIGVGS 303 TM +TFAL+DAL ++ LDY+H+S WS+ RG RPR+EQIV+ +P+IGVGS Sbjct: 238 TMDDTFALLDALMKKELDYVHISLQHFWSKARRGGEPGRPRMEQIVEHVAGRVPLIGVGS 297 Query: 304 LYSADDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPL 363 L++ D+ LK++ + + L+ALGR L++EP WV+K+ G+ D I T L ++ LVIP+PL Sbjct: 298 LHTGDEVLKAMETDVPLIALGRELVMEPHWVEKIKAGQEDAIQTALRKDDRERLVIPEPL 357 Query: 364 WRALIHTPGWLP 375 W+ +I TPGW P Sbjct: 358 WKMIISTPGWFP 369 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,497,402,271 Number of extensions: 115404732 Number of successful extensions: 296462 Number of sequences better than 1.0e-05: 3845 Number of HSP's gapped: 288097 Number of HSP's successfully gapped: 3861 Length of query: 378 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 241 Effective length of database: 1,770,017,148 Effective search space: 426574132668 Effective search space used: 426574132668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)