BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0009.p
         (345 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3BHJ8.1 C3BHJ8_9BACI Putative uncharacterized protein                 63   4e-08
C3AJ20.1 C3AJ20_BACMY Putative uncharacterized protein                 63   5e-08
C2W5E1.1 C2W5E1_BACCE Putative uncharacterized protein                 60   3e-07
Q9KB08.1 Q9KB08_BACHD BH2128 protein                                   59   6e-07
C3B0X2.1 C3B0X2_BACMY Putative uncharacterized protein                 57   2e-06

>C3BHJ8.1 C3BHJ8_9BACI Putative uncharacterized protein
          Length = 214

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 2/146 (1%)

Query: 14  ILIVLAGVVWHAGGVSAEDTIKLTVNSHTTS-MAKMANMQPGDVTTSDYTVINEGKEPFN 72
           IL+V  G+  +   V AE+  ++ ++      +  ++NM+PGD       + NEG +  +
Sbjct: 6   ILVVFIGITKNIDQVYAEERREIDISLEPKEVLFHVSNMKPGDWANRSIRISNEGTKKLS 65

Query: 73  YYVDFKFMSGDRELYNILQMTLQKEGVILYSGVMSEAEXXXXXXXXXXXXQEAIQMDVTF 132
           Y +  +   G  +LY  L +T++ +  +LY G + E +             E I   +  
Sbjct: 66  YSIKSEASEGSTKLYEALTVTVKDKQGVLYEGSLKELQSMEKRTLAVNRTDELI-YTIHV 124

Query: 133 PYEAGNEYQATTASVAFVFSASGEPG 158
           P E GNEYQ     V F+F A G  G
Sbjct: 125 PKELGNEYQGLQTIVKFIFYAEGPTG 150


>C3AJ20.1 C3AJ20_BACMY Putative uncharacterized protein
          Length = 224

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 2/146 (1%)

Query: 14  ILIVLAGVVWHAGGVSAEDTIKLTVNSHTTS-MAKMANMQPGDVTTSDYTVINEGKEPFN 72
           IL+V  G+  +   V AE+  ++ ++      +  ++NM+PGD       + NEG +  +
Sbjct: 16  ILVVFIGITKNIDQVYAEERREIDISLEPKEVLFHVSNMKPGDWANRSIRISNEGTKKLS 75

Query: 73  YYVDFKFMSGDRELYNILQMTLQKEGVILYSGVMSEAEXXXXXXXXXXXXQEAIQMDVTF 132
           Y +  +   G  +LY  L +T++ +  +LY G + E +             E I   +  
Sbjct: 76  YSIKSEASEGSTKLYEALTVTVKDKQGVLYEGSLKELQSMEKRTLAVDRTDELI-YTIHV 134

Query: 133 PYEAGNEYQATTASVAFVFSASGEPG 158
           P E GNEYQ     V F+F A G  G
Sbjct: 135 PKELGNEYQGLQTIVKFIFYAEGPTG 160


>C2W5E1.1 C2W5E1_BACCE Putative uncharacterized protein
          Length = 216

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 3/156 (1%)

Query: 3   KKYHKAILGLYILIVLAGVVWHAGGVSAEDTIKLTVNSHTTSMAKMA-NMQPGDVTTSDY 61
           KK+   +    ILIV  G+  +   V AE+  ++ ++     +   A NM+PGD      
Sbjct: 5   KKWLFIMSTCLILIVFIGMTKNIDQVYAEERREIDISLDPKEVLFHATNMKPGDWADRSI 64

Query: 62  TVINEGKEPFNYYVDFKFMSGDRELYNILQMTLQKEGVILYSGVMSEAEXXXXXXXXXXX 121
            + NEG +  +Y +  +   G  +LY  L++T++ +  +LY G + E +           
Sbjct: 65  RIRNEGTKKLSYSIKSEVSEGSTKLYEALKVTVKDKQKLLYEGSLKELQSMEKRTLAVDK 124

Query: 122 XQEAIQMDVTFPYEAGNEYQATTASVAFVFSASGEP 157
             E I   V  P E GNEYQ     V F+F A  EP
Sbjct: 125 TDELI-YTVYVPKELGNEYQGLQTIVKFIFYAE-EP 158


>Q9KB08.1 Q9KB08_BACHD BH2128 protein
          Length = 204

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 50  NMQPGDVTTSDYTVINEGKEPFNYYVDFKFMSGDRELYNILQMTLQKEGVILYSGVMSEA 109
           +++PGD    +  ++N G +   Y +   F+SG + LYNI+ +T++ E   LYSG + + 
Sbjct: 38  HLKPGDWIPRELIIVNHGDDR-TYVLSACFVSGSKALYNIMDVTIKDEWQTLYSGKLKDF 96

Query: 110 EXXXXXXXXXXXXQEAIQMDVTFPYEAGNEYQATTASVAFVFSASGE 156
                         + + + VTFP EAGNEYQ     + F   + G 
Sbjct: 97  R-KLDSRALSSGEDDVLFITVTFPEEAGNEYQGLQTDIVFQIRSEGR 142


>C3B0X2.1 C3B0X2_BACMY Putative uncharacterized protein
          Length = 195

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 48  MANMQPGDVTTSDYTVINEGKEPFNYYVDFKFMSGDRELYNILQMTLQKEGVILYSGVMS 107
           ++NM+PGD       + NEG +  +Y +  +   G  +LY  L +T++ +  +LY G + 
Sbjct: 22  VSNMKPGDWANRSIRISNEGTKKLSYSIKSEASEGSTKLYEALTVTVKDKQGVLYEGSLK 81

Query: 108 EAEXXXXXXXXXXXXQEAIQMDVTFPYEAGNEYQATTASVAFVFSASGEPG 158
           E +             E I   +  P E GNEYQ     V F+F A G  G
Sbjct: 82  ELQSMEKRTLAVDRTDELI-YTIHVPKELGNEYQGLQTIVKFIFYAEGPTG 131


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,079,958,923
Number of extensions: 30935855
Number of successful extensions: 46711
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 46709
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 3,060,696,203
Length adjustment: 136
Effective length of query: 209
Effective length of database: 1,779,438,163
Effective search space: 371902576067
Effective search space used: 371902576067
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)