BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0007.p (337 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K828.1 B3K828_9BACI Luciferase family protein 470 e-131 Q2B4B0.1 Q2B4B0_9BACI Putative uncharacterized protein 459 e-127 A6T4C3.1 A6T4C3_JANMA Flavin dependant oxidoreductase 436 e-120 A4GAL8.1 A4GAL8_HERAR Luciferase-like monooxygenase 429 e-118 A7Z8Y9.1 A7Z8Y9_BACA2 YvbT 427 e-118 >B3K828.1 B3K828_9BACI Luciferase family protein Length = 345 Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/333 (68%), Positives = 270/333 (81%), Gaps = 2/333 (0%) Query: 2 KKLQDIPFSVLDLAPIVEGGTAADSFHNTLDLARHAEAWGYHRYWLAEHHNMPGIASSAT 61 K L+DIP S+LDLAPI G TAA S NTLDLA+HAE WGY+RYWLAEHHNMPGIASSAT Sbjct: 12 KTLRDIPISILDLAPITAGSTAAQSLRNTLDLAQHAEKWGYNRYWLAEHHNMPGIASSAT 71 Query: 62 SLVIGHVAAGTKSIRVGSGGIMLSNHAPLMIAEQFGTLESLYPGRIDLGLGRAPGSDQAA 121 S+VIGHVA GT IRVGSGGIML NHAPL+IAEQFGTLESLYPGRIDLGLGRAPGSDQ Sbjct: 72 SVVIGHVAGGTSKIRVGSGGIMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQLT 131 Query: 122 ARAMRRGLGQDGSEFPEQLSELRAYFDPDGAGSRPLGVRAVPGEGLNVPIWLLGSSGFSA 181 +RA+RRG G DG +FP++L ELR YF P S + +RA+PGEGL+VPIWLLGSSGFSA Sbjct: 132 SRALRRGPGSDGQDFPDRLGELRNYFQPTSGSS--MRIRAIPGEGLHVPIWLLGSSGFSA 189 Query: 182 QLAGQLGLPFAFASHFAPDYLLPALHLYRTSFKPSAVLDKPHVMVGLGITAAETTEQARW 241 QLAGQLGLPF+FASHFAPDYL+ AL LYRTSF+PS+ L KP+ M+G+ + A+T E+A+ Sbjct: 190 QLAGQLGLPFSFASHFAPDYLMAALDLYRTSFRPSSELSKPYAMIGVNVICADTDEEAQR 249 Query: 242 LATSQQQQFLNIIRGRTGKLQPPVDSMEGLWSPQEKAMLLSKQLYSIAGDQAAIKERLLQ 301 LATS QQFLNIIRGRTG+L PPVDSM+ LW+ QE+A++ + +S G ++ +L Q Sbjct: 250 LATSPYQQFLNIIRGRTGQLSPPVDSMDDLWNLQEQAIVKRQLSFSAIGSPETVRAQLEQ 309 Query: 302 IVEETQADEFIVASQIYDHSARLHSYELVADLV 334 + T ADE IVA+ IYDH ARL SYEL+A++V Sbjct: 310 FQQSTDADEIIVAAAIYDHQARLRSYELLAEVV 342 >Q2B4B0.1 Q2B4B0_9BACI Putative uncharacterized protein Length = 339 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/334 (66%), Positives = 267/334 (79%), Gaps = 1/334 (0%) Query: 2 KKLQDIPFSVLDLAPIVEGGTAADSFHNTLDLARHAEAWGYHRYWLAEHHNMPGIASSAT 61 KKL DI +SVLDL+PI EG TAA S NTLDLA+HAE WGY RYWLAEHHNM GIASSAT Sbjct: 5 KKLSDIKYSVLDLSPINEGSTAAVSLKNTLDLAQHAEKWGYTRYWLAEHHNMAGIASSAT 64 Query: 62 SLVIGHVAAGTKSIRVGSGGIMLSNHAPLMIAEQFGTLESLYPGRIDLGLGRAPGSDQAA 121 S+VIGHVA GT SIRVGSGGIML NHAPL+IAEQFGTLESLYPGRIDLGLGRAPG+DQ Sbjct: 65 SVVIGHVAGGTSSIRVGSGGIMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGTDQLT 124 Query: 122 ARAMRRGLGQDGSEFPEQLSELRAYFDPDGAGSRPLGVRAVPGEGLNVPIWLLGSSGFSA 181 A A+RR G DG +FPEQL ELR YF+ + R VRA+PGEGLN+PIWLLGSSGFSA Sbjct: 125 AHALRRDRGNDGQDFPEQLEELREYFEAESPAERKR-VRAIPGEGLNIPIWLLGSSGFSA 183 Query: 182 QLAGQLGLPFAFASHFAPDYLLPALHLYRTSFKPSAVLDKPHVMVGLGITAAETTEQARW 241 +L+ QLGLPFAFASHF+PD LPAL LYR+ F PS L +P+ MVG+ + AA+T E+A Sbjct: 184 RLSAQLGLPFAFASHFSPDNTLPALQLYRSHFTPSDELSEPYAMVGVNVIAADTQEEAER 243 Query: 242 LATSQQQQFLNIIRGRTGKLQPPVDSMEGLWSPQEKAMLLSKQLYSIAGDQAAIKERLLQ 301 LATS QQQFLN+IR G L+PPVD+M+ LWS EKA+L + SI GD ++++L + Sbjct: 244 LATSMQQQFLNLIRNTPGALKPPVDNMDELWSEYEKALLQQQLGSSIIGDAETVQKKLQE 303 Query: 302 IVEETQADEFIVASQIYDHSARLHSYELVADLVK 335 +++TQA+EF+V +QIYDH ARL S+E+V++++K Sbjct: 304 FLDKTQANEFMVNAQIYDHKARLRSFEIVSEIMK 337 >A6T4C3.1 A6T4C3_JANMA Flavin dependant oxidoreductase Length = 333 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/336 (62%), Positives = 264/336 (78%), Gaps = 3/336 (0%) Query: 1 VKKLQDIPFSVLDLAPIVEGGTAADSFHNTLDLARHAEAWGYHRYWLAEHHNMPGIASSA 60 +K L++IP SVLDL+PI+ GT AD+FH +LDLA+H E GY+RYWLAEHH+MPGIAS+A Sbjct: 1 MKSLKNIPLSVLDLSPILVDGTPADAFHRSLDLAQHVEKRGYNRYWLAEHHSMPGIASAA 60 Query: 61 TSLVIGHVAAGTKSIRVGSGGIMLSNHAPLMIAEQFGTLESLYPGRIDLGLGRAPGSDQA 120 TS+VIG+VA GT +IRVGSGGIML NHAPL+IAEQFGTL SLYPGRIDLGLGRAPGS+QA Sbjct: 61 TSVVIGYVAGGTSTIRVGSGGIMLPNHAPLVIAEQFGTLASLYPGRIDLGLGRAPGSNQA 120 Query: 121 AARAMRRGLGQDGSEFPEQLSELRAYFDPDGAGSRPLGVRAVPGEGLNVPIWLLGSSGFS 180 ARA+RR + DGSEFP QL+ELRA+ P + V+AVPG G+++PIWLLGSS +S Sbjct: 121 TARALRREISDDGSEFPRQLNELRAFLQPSNESA---AVQAVPGAGIDIPIWLLGSSSYS 177 Query: 181 AQLAGQLGLPFAFASHFAPDYLLPALHLYRTSFKPSAVLDKPHVMVGLGITAAETTEQAR 240 AQLAG LGLPFAFA F+PDY+L ALHLYR +F+PS LD P+ MVG+ + AAET E+A+ Sbjct: 178 AQLAGHLGLPFAFAGQFSPDYMLNALHLYRQTFRPSETLDAPYAMVGVNVFAAETEEEAQ 237 Query: 241 WLATSQQQQFLNIIRGRTGKLQPPVDSMEGLWSPQEKAMLLSKQLYSIAGDQAAIKERLL 300 LATSQQQ L+++RG GKL PP+++M+ W P E+ + S SI GD A +KE+L Sbjct: 238 RLATSQQQMHLSLVRGTPGKLPPPIENMDDAWLPHERISVESMLRASIIGDAAIVKEKLE 297 Query: 301 QIVEETQADEFIVASQIYDHSARLHSYELVADLVKG 336 +E TQADE I+ S I+DH+ R+ SYE+VAD+ +G Sbjct: 298 AFLETTQADEIIINSMIFDHAKRVRSYEIVADVWQG 333 >A4GAL8.1 A4GAL8_HERAR Luciferase-like monooxygenase Length = 333 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/333 (61%), Positives = 264/333 (79%), Gaps = 3/333 (0%) Query: 1 VKKLQDIPFSVLDLAPIVEGGTAADSFHNTLDLARHAEAWGYHRYWLAEHHNMPGIASSA 60 +K L++ P SVLDL+PI+ GT AD+FH +LDLA+ E GY+RYWLAEHH+MPGIAS+A Sbjct: 1 MKSLKNTPLSVLDLSPILVDGTPADAFHRSLDLAQRVEKRGYNRYWLAEHHSMPGIASAA 60 Query: 61 TSLVIGHVAAGTKSIRVGSGGIMLSNHAPLMIAEQFGTLESLYPGRIDLGLGRAPGSDQA 120 T++VIG+VA GT +IRVGSGGIML NHAPL++AEQFGTLESLYPGRIDLGLGRAPGSDQA Sbjct: 61 TAVVIGYVAGGTSTIRVGSGGIMLPNHAPLVVAEQFGTLESLYPGRIDLGLGRAPGSDQA 120 Query: 121 AARAMRRGLGQDGSEFPEQLSELRAYFDPDGAGSRPLGVRAVPGEGLNVPIWLLGSSGFS 180 ARA+RR + DGSEFP QL+ELRA+ P +R V+A+PG GLN+PIWLLGSS +S Sbjct: 121 TARALRREISDDGSEFPRQLNELRAFLQPADTHAR---VQAIPGAGLNIPIWLLGSSSYS 177 Query: 181 AQLAGQLGLPFAFASHFAPDYLLPALHLYRTSFKPSAVLDKPHVMVGLGITAAETTEQAR 240 AQLAG LGLPFAFA F+PDY+L AL LYR +F+PS LDKP+ MVG+ I AA+T E+A+ Sbjct: 178 AQLAGYLGLPFAFAGQFSPDYMLTALELYRQTFRPSQALDKPYAMVGVNIFAADTDEEAQ 237 Query: 241 WLATSQQQQFLNIIRGRTGKLQPPVDSMEGLWSPQEKAMLLSKQLYSIAGDQAAIKERLL 300 LATSQQQ L+++RG GKL PP+++M+ +W P E+A + S SI G+ A ++++L Sbjct: 238 HLATSQQQMHLDLVRGTPGKLPPPIENMDDVWLPHERASVESMLRASIIGNAATVQQKLQ 297 Query: 301 QIVEETQADEFIVASQIYDHSARLHSYELVADL 333 ++ T ADE I+ + I+DH+AR+ SYE+VAD+ Sbjct: 298 AFLDATHADEIIINTMIFDHAARVRSYEIVADV 330 >A7Z8Y9.1 A7Z8Y9_BACA2 YvbT Length = 335 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/330 (60%), Positives = 262/330 (79%), Gaps = 3/330 (0%) Query: 4 LQDIPFSVLDLAPIVEGGTAADSFHNTLDLARHAEAWGYHRYWLAEHHNMPGIASSATSL 63 L+D FSVL+L+P+V+GGT A+SF N++DLAR AE WGY+RYWLAEHHN+ G+ASSAT++ Sbjct: 6 LKDTAFSVLNLSPVVQGGTVAESFRNSMDLARRAEEWGYNRYWLAEHHNIEGVASSATAV 65 Query: 64 VIGHVAAGTKSIRVGSGGIMLSNHAPLMIAEQFGTLESLYPGRIDLGLGRAPGSDQAAAR 123 +IGH+A GTK IRVGSGGIML NH+ L+IAEQFGTLE+LYPGRIDLGLGRAPG+DQ AR Sbjct: 66 LIGHIAGGTKKIRVGSGGIMLPNHSSLVIAEQFGTLETLYPGRIDLGLGRAPGTDQLTAR 125 Query: 124 AMRRGLGQDGSEFPEQLSELRAYFDPDGAGSRPLGVRAVPGEGLNVPIWLLGSSGFSAQL 183 A+RR + G +FPEQL ELR YF P G VRA+PGEGL+VPIWLLGSSGFSA+L Sbjct: 126 ALRRNI-NSGEDFPEQLEELRNYFKPSGNVRNQ--VRAIPGEGLDVPIWLLGSSGFSARL 182 Query: 184 AGQLGLPFAFASHFAPDYLLPALHLYRTSFKPSAVLDKPHVMVGLGITAAETTEQARWLA 243 AG+LGLPFAFA+HF+P +PAL LYR+SF+PS VLD+P+ MVG+ + AA+T E+A LA Sbjct: 183 AGELGLPFAFAAHFSPKNTVPALELYRSSFRPSDVLDQPYAMVGVTVIAADTDEKAEHLA 242 Query: 244 TSQQQQFLNIIRGRTGKLQPPVDSMEGLWSPQEKAMLLSKQLYSIAGDQAAIKERLLQIV 303 TS Q+FL+++RG +L+PPV+ M+ +WSP EKAM+ + +I G +KE+L + Sbjct: 243 TSHYQRFLDLVRGTPNQLKPPVEDMDQIWSPYEKAMVNEQLSSTIVGGPERVKEKLESFI 302 Query: 304 EETQADEFIVASQIYDHSARLHSYELVADL 333 TQADE +V S+ ++H+ R+ S+E++A+L Sbjct: 303 RTTQADEIMVNSESFEHADRMRSFEIIAEL 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,052,601,937 Number of extensions: 87342455 Number of successful extensions: 223906 Number of sequences better than 1.0e-05: 1176 Number of HSP's gapped: 222646 Number of HSP's successfully gapped: 1197 Length of query: 337 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 201 Effective length of database: 1,779,438,163 Effective search space: 357667070763 Effective search space used: 357667070763 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)