BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0006.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8D0R3.1 B8D0R3_HALOH Transcriptional regulator, LacI family 268 6e-70 B1D5V9.1 B1D5V9_9BACL Transcriptional regulator, LacI family EC=... 265 6e-69 Q5WC99.1 Q5WC99_BACSK Glucose-resistance amylase regulator catab... 263 2e-68 B9DXC2.1 B9DXC2_CLOK1 Putative uncharacterized protein 263 3e-68 A5N3P0.1 A5N3P0_CLOK5 Transcriptional regulator 263 3e-68 >B8D0R3.1 B8D0R3_HALOH Transcriptional regulator, LacI family Length = 332 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 136/334 (40%), Positives = 215/334 (64%), Gaps = 4/334 (1%) Query: 13 MKPTIRDVAKMAEVSISTVSRVMN-APQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKK 71 MKPTI+DVA+ A VS++TVSRV+N P VE+++ +V+EAI++L Y PNA ARGL+ K+ Sbjct: 1 MKPTIKDVARKANVSVATVSRVLNNQPGYSVETEK-KVLEAIDELGYHPNALARGLVGKR 59 Query: 72 SNTLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDG 131 + TLG+LIP I N+ + ++ G++DA K +S++ICNTD D ++ + Y+D EK+VDG Sbjct: 60 TKTLGVLIPRISNMVSSQIMNGIEDAAHKNDHSVIICNTDNDGQKTMVYLDVLREKRVDG 119 Query: 132 IVYASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQ 191 I+ S++L E KL ++P +L+S+ E P ++V+DE+AAY A ++LI GH Sbjct: 120 IIVVSEMLTEEYANKLVELKVPVILISTIDETGQFPHIKVNDEQAAYQATEYLISKGHKN 179 Query: 192 IGMIGFNHDNSVSGPPRYEGFVRALNEAGLEHSIEQVRYANHRFEHAYQAAHELFTDYPQ 251 I MI ++ V+G PR +G+ +AL E GL E + + + F+ + L + Sbjct: 180 IAMISGTPEDMVAGKPRLDGYKKALRENGLPVKEENIVFGDFWFDSGKECMERLLNNNQG 239 Query: 252 VTALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGY 311 +TA+F +DE A GA+S I VP +S+IGFDN +++ M IP LTT++QP YQ+GY Sbjct: 240 ITAIFVASDEMAAGALSTAYKSGIRVPEDISIIGFDNTQLAEMTIPPLTTVSQPFYQMGY 299 Query: 312 RAAEKLHELLTTGKVEVPTEKMEHKLIVRESSRE 345 + + L + + GK EV + + H ++ RE+ ++ Sbjct: 300 KGLKLLLKAI-KGK-EVNSAILPHVIVERETVKK 331 >B1D5V9.1 B1D5V9_9BACL Transcriptional regulator, LacI family EC=5.1.1.1 Length = 335 Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 129/333 (38%), Positives = 215/333 (64%), Gaps = 1/333 (0%) Query: 13 MKPTIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKS 72 M PTIRDVA+ A VSI+TVSRV+N + + +VI+ IE + Y PNA AR L +++ Sbjct: 1 MIPTIRDVAREANVSIATVSRVLNGLSGYSDKTKQKVIKTIEDMGYHPNAIARYLNNRRT 60 Query: 73 NTLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGI 132 T+G++ P + + + + V++G+++ ++ GYS+++CNT D R + Y+ E+Q+DGI Sbjct: 61 QTIGVMFPAVASEFASAVLQGIEEYALERGYSVLVCNTAVDGNRTMKYLQVLRERQIDGI 120 Query: 133 VYASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQI 192 ++AS+VL E + L ++P VLVSS +E+ VP V+VDD +A+YDAV +LI+ GH I Sbjct: 121 IFASEVLKHEYKQMLDTMQVPIVLVSSENEDTKVPFVKVDDRQASYDAVSYLIDKGHKDI 180 Query: 193 GMIGFNHDNSVSGPPRYEGFVRALNEAGLEHSIEQVRYANHRFEHAYQAAHELFTDYPQV 252 MI ++ ++G PR +G+ AL++ G+ +V Y + ++ A L + Sbjct: 181 AMIAGTAEDPIAGIPRLQGYKDALHDKGIPFRGSRVAYGDFHYDSGKAAMETLLEHERGI 240 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 TA+F +DE A+GA++ ++ I VP +SVIG+DN+R+S M P LTT+ QP+ QLG Sbjct: 241 TAVFAASDEMAVGAMNAAMEKGIRVPEDLSVIGYDNIRLSRMVYPALTTVGQPLLQLGRD 300 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRESSRE 345 AA+K+ ++ TGK+ VP+ + H+++ R++ ++ Sbjct: 301 AADKVITMIETGKI-VPSLIVPHEIVERQTVKD 332 >Q5WC99.1 Q5WC99_BACSK Glucose-resistance amylase regulator catabolite control protein A Length = 342 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 137/330 (41%), Positives = 207/330 (62%), Gaps = 2/330 (0%) Query: 14 KPTIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKSN 73 KPTI+DVAK A VSI+TVSRV+N + V++ IE++ Y PNA ARGLI K+SN Sbjct: 3 KPTIKDVAKEAGVSIATVSRVLNNGIGYSIKTKQHVLKTIEEMGYSPNAIARGLINKQSN 62 Query: 74 TLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGIV 133 T+G+L P+I L A +++G+++A G S++ICNT + Y+ EKQVDGI+ Sbjct: 63 TIGVLFPEISGLVSAEILQGIEEAAHARGKSIVICNTASSGHKTKEYLKLLQEKQVDGIL 122 Query: 134 YASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQIG 193 +AS +L E + +P V VS++SE+ +P+V+VD+E AAYDAV + I+ GHT+IG Sbjct: 123 FASQLLTLEYVAIVRKMGVPVVTVSAYSEDPTIPAVQVDNETAAYDAVCYFIQQGHTEIG 182 Query: 194 MIGFNHDNSVSGPPRYEGFVRALNEAGLEHSIEQVRY-ANHRFEHAYQAAHELFTDYPQV 252 MI N + ++G PR G+ RAL EAG+ + +V + FE +A L+TD+P + Sbjct: 183 MISGNPSDLLAGAPRMAGYKRALKEAGIAYVPTKVAWDKGFYFEDGQKAFQRLYTDHPNL 242 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 TA+F +DE A+GA+S + + +P +SVIGFD +++ M +P LTT++Q + +G Sbjct: 243 TAIFSASDELAIGAMSAATAKGLRIPEDLSVIGFDGTKLAKMAVPPLTTVSQHFFSMGKT 302 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRES 342 AA L + + TG+ + H+LI R S Sbjct: 303 AANLLFDSIATGQAS-SGRIIRHELIKRHS 331 >B9DXC2.1 B9DXC2_CLOK1 Putative uncharacterized protein Length = 332 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 131/333 (39%), Positives = 208/333 (62%), Gaps = 1/333 (0%) Query: 13 MKPTIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKS 72 M +I+DVAK A VSI+TVSRV+N V E + +V+ AI+KL Y+PN AR L +K+ Sbjct: 1 MATSIKDVAKEAGVSIATVSRVLNDVDVVNEETKKKVLAAIKKLGYRPNIVARSLKTQKT 60 Query: 73 NTLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGI 132 T+G++IPDI N ++ ++RG +D Y++M+CNTD D E+ Y+ EK DG+ Sbjct: 61 RTIGIIIPDISNQFYPEIVRGAEDVANIYDYNIMLCNTDLDMEKETEYLKVLKEKMSDGV 120 Query: 133 VYASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQI 192 +Y S+ L + + +IP VLV + +++ D+PSV +D+E+AAYD V +LI G+ +I Sbjct: 121 LYMSNSLEEDMLNLIKQLQIPMVLVETTNDKEDIPSVTIDNEKAAYDGVTYLINKGNRKI 180 Query: 193 GMIGFNHDNSVSGPPRYEGFVRALNEAGLEHSIEQVRYANHRFEHAYQAAHELFTDYPQV 252 IG + D + + RY+G+ +AL E L+ + ++N + + Y+ +++ D V Sbjct: 181 AYIGASEDMANASAVRYKGYKKALEENNLQVDKNRTYFSNLKAKDGYEGINKIL-DRVDV 239 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 A+FC +DE AMGAI+ L+DR I VP V V+GFDN+ + ++ PKLTT+AQPIY +G Sbjct: 240 DAIFCSSDEIAMGAINALRDRGIKVPEDVDVMGFDNIYSASIFYPKLTTVAQPIYDMGSV 299 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRESSRE 345 L +L+ K++ + H+LI R+S ++ Sbjct: 300 GMRMLIKLINNQKMDNTNYVLPHQLIERDSCKK 332 >A5N3P0.1 A5N3P0_CLOK5 Transcriptional regulator Length = 332 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 131/333 (39%), Positives = 208/333 (62%), Gaps = 1/333 (0%) Query: 13 MKPTIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKS 72 M +I+DVAK A VSI+TVSRV+N V E + +V+ AI+KL Y+PN AR L +K+ Sbjct: 1 MATSIKDVAKEAGVSIATVSRVLNDVDVVNEETKKKVLAAIKKLGYRPNIVARSLKTQKT 60 Query: 73 NTLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGI 132 T+G++IPDI N ++ ++RG +D Y++M+CNTD D E+ Y+ EK DG+ Sbjct: 61 RTIGIIIPDISNQFYPEIVRGAEDVANIYDYNIMLCNTDLDMEKETEYLKVLKEKMSDGV 120 Query: 133 VYASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQI 192 +Y S+ L + + +IP VLV + +++ D+PSV +D+E+AAYD V +LI G+ +I Sbjct: 121 LYMSNSLEEDMLNLIKQLQIPMVLVETTNDKEDIPSVTIDNEKAAYDGVTYLINKGNRKI 180 Query: 193 GMIGFNHDNSVSGPPRYEGFVRALNEAGLEHSIEQVRYANHRFEHAYQAAHELFTDYPQV 252 IG + D + + RY+G+ +AL E L+ + ++N + + Y+ +++ D V Sbjct: 181 AYIGASEDMANASAVRYKGYKKALEENNLQVDKNRTYFSNLKAKDGYEGINKIL-DRVDV 239 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 A+FC +DE AMGAI+ L+DR I VP V V+GFDN+ + ++ PKLTT+AQPIY +G Sbjct: 240 DAIFCSSDEIAMGAINALRDRGIKVPEDVDVMGFDNIYSASIFYPKLTTVAQPIYDMGSV 299 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRESSRE 345 L +L+ K++ + H+LI R+S ++ Sbjct: 300 GMRMLIKLINNQKMDNTNYVLPHQLIERDSCKK 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,935,585,184 Number of extensions: 78972844 Number of successful extensions: 207610 Number of sequences better than 1.0e-05: 9141 Number of HSP's gapped: 193506 Number of HSP's successfully gapped: 9150 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)