BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0005.p (455 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9B0V8.1 A9B0V8_HERA2 Extracellular solute-binding protein family 1 444 e-123 Q4BWC6.1 Q4BWC6_CROWT Extracellular solute-binding protein, fami... 377 e-102 B4WK45.1 B4WK45_9SYNE Bacterial extracellular solute-binding pro... 372 e-101 B1XHV6.1 B1XHV6_SYNP2 ABC transporter, periplasmic binding protein 372 e-101 B4VH51.1 B4VH51_9CYAN Bacterial extracellular solute-binding pro... 367 2e-99 >A9B0V8.1 A9B0V8_HERA2 Extracellular solute-binding protein family 1 Length = 485 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/407 (51%), Positives = 285/407 (70%), Gaps = 6/407 (1%) Query: 48 LDLAMKGEYKGTKVTMFGPFVDADQVKFESSIKEFEAKTGIDIQYEGSKEFEATINIRVD 107 L A GE+KGTKV++FG +V+A+ F ++ FEA+TGID+QYEGSK+FE I +R + Sbjct: 81 LVRAEAGEFKGTKVSIFGLWVEAEDTAFNQTLAAFEARTGIDVQYEGSKDFETLIPVRAE 140 Query: 108 GGNAPDIADFPQPGLLASIAKTGKVVDLTGVLDQEKLKANYNKSWLDMSTMDGKDGKIMA 167 GGNAPDIA F QPGL+A++A+ K+VD++ + E L+ +Y +SW+D+ ++D + Sbjct: 141 GGNAPDIAGFSQPGLMATLARKNKLVDISSFIKPEDLQKDYIQSWIDLGSVD----NTLY 196 Query: 168 GIWNRSNVKSLVWYPKKQFDAAGYTVPETWDDMMALTEQIAKDGDPAWTIGIESGAATGW 227 G++ R++ KS+VWYP F+ AGYT+PETWD++ AL++++ DG+ W IG+E G TGW Sbjct: 197 GVFFRASTKSIVWYPVPAFEEAGYTIPETWDELTALSDKMVADGNTPWCIGLEHGNVTGW 256 Query: 228 AATDWIENIMLRTTTPENYDKWVKGELPFTSPEVKNAVEVMSKIWLNKDYVYGGTKSIVT 287 ATDW+E+IMLRT E YDKWV E+PFT P VKNA EVM KIW N+ YV GG + I+T Sbjct: 257 VATDWMEDIMLRTAGAETYDKWVSHEIPFTDPSVKNAAEVMGKIWFNETYVAGGREGILT 316 Query: 288 TAFGDAPKPMFE-NPPKAWFNLMGNFITSFFPETAKVDQDYDWFYLPPIDPQYGKPVLVA 346 T D PMF + P W + +I SFFPE K D ++FYLPPIDP GKPVL Sbjct: 317 TTVADTQTPMFNADKPGCWLHRQAGWIPSFFPEGKKAGTDSNFFYLPPIDPAQGKPVLGG 376 Query: 347 GDIYAMFNDRPEVRAVMEFFTTGESIKTWVQSGGVIAPMNDASLDWYTSESDRRMAKLVQ 406 GD++AMFNDRPEVRAV+++ + ES K WV++GG I+P L WY ++ DRR A++++ Sbjct: 377 GDVFAMFNDRPEVRAVLQYLASPESAKGWVEAGGFISPNKSVDLAWYGNDIDRRQAEIIK 436 Query: 407 DASTLRFDGSDLMPGKVGAGTFWKGMTDYVSGTATLDKALEQIQSGW 453 +A+ RFD SDLMP +VG GTFWKGM DYV+ T +D L+ I+ W Sbjct: 437 EATVFRFDASDLMPAEVGVGTFWKGMVDYVNNT-EIDTVLQTIEESW 482 >Q4BWC6.1 Q4BWC6_CROWT Extracellular solute-binding protein, family 1 Length = 429 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/394 (45%), Positives = 255/394 (64%), Gaps = 5/394 (1%) Query: 60 KVTMFGPFVDADQVKFESSIKEFEAKTGIDIQYEGSKEFEATINIRVDGGNAPDIADFPQ 119 +VT+ G V +Q K E ++ F KTGI++ YEG+ F T+ IRVD GN PDIA FPQ Sbjct: 39 QVTILGVIVGEEQEKLEKALAPFTEKTGIEVVYEGTNTFATTLPIRVDSGNLPDIALFPQ 98 Query: 120 PGLLASIAKTGKVVDLTGVLDQEKLKANYNKSWLDMSTMDGKDGKIMAGIWNRSNVKSLV 179 PGL+A AK G+++ LT + E LK Y +W+ + ++D + G+W +++VKSLV Sbjct: 99 PGLMADFAKEGQLIPLTEFITPENLKEAYPDTWIALGSVD----ETPYGVWYQASVKSLV 154 Query: 180 WYPKKQFDAAGYTVPETWDDMMALTEQIAKDGDPAWTIGIESGAATGWAATDWIENIMLR 239 WY K F GY +P+TW++M+AL++++ ++G W + +ESG ATGW TDW+E+IMLR Sbjct: 155 WYNPKVFQENGYEIPKTWEEMIALSDRLVEEGKTPWCVAMESGDATGWVGTDWVEDIMLR 214 Query: 240 TTTPENYDKWVKGELPFTSPEVKNAVEVMSKIWLNKDYVYGGTKSIVTTAFGDAPKPMFE 299 T PE YD+WV ++PFT VKNAVE KI N YVYGG +++ FGD+ + +F Sbjct: 215 TAGPEVYDQWVNNQIPFTDQSVKNAVETFGKIVRNDKYVYGGKVGVLSIPFGDSIQGLFG 274 Query: 300 NPPKAWFNLMGNFITSFFPETAKVDQDYDWFYLPPIDPQYGKPVLVAGDIYAMFNDRPEV 359 PK + + FI SF PE +D FYLPPI+P G PVLVAGD++AMFND PE Sbjct: 275 EQPKCYLHRQAAFIASFLPEDINTAEDVGIFYLPPIEPDQGSPVLVAGDVFAMFNDTPEA 334 Query: 360 RAVMEFFTTGESIKTWVQSGGVIAPMNDASLDWYTSESDRRMAKLVQDASTLRFDGSDLM 419 R +ME+ + + V+ GG I+P + ++D Y ++ ++ AK++ DA +RFDGSD+M Sbjct: 335 RQLMEYVASKVPHEIVVKLGGSISPRKNIAMDLYPNQLMQQQAKILADADVIRFDGSDMM 394 Query: 420 PGKVGAGTFWKGMTDYVSGTATLDKALEQIQSGW 453 PG VG GTFW GM DYV GT ++ LE I++ W Sbjct: 395 PGAVGTGTFWSGMVDYVGGT-DVETVLENIENSW 427 >B4WK45.1 B4WK45_9SYNE Bacterial extracellular solute-binding protein, putative Length = 433 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/382 (45%), Positives = 245/382 (64%), Gaps = 5/382 (1%) Query: 72 QVKFESSIKEFEAKTGIDIQYEGSKEFEATINIRVDGGNAPDIADFPQPGLLASIAKTGK 131 Q K E ++ FE +TGID+ YEG+ F + +RV+ G+APD+A FPQPGLLA A+ G+ Sbjct: 55 QEKLEQALAPFEEETGIDVVYEGTDAFATLLPVRVESGDAPDLAMFPQPGLLADFARAGQ 114 Query: 132 VVDLTGVLDQEKLKANYNKSWLDMSTMDGKDGKIMAGIWNRSNVKSLVWYPKKQFDAAGY 191 ++ L +D L Y +WL++ ++D + GIW R++VKSLVWY F+ AGY Sbjct: 115 LIPLNSFMDSSTLSDAYPDTWLELGSVDDE----AYGIWYRASVKSLVWYRPTAFEEAGY 170 Query: 192 TVPETWDDMMALTEQIAKDGDPAWTIGIESGAATGWAATDWIENIMLRTTTPENYDKWVK 251 +P TW +++AL++QI DG W IG+ESG A+GW TDW+E+IMLRT PE Y +WV+ Sbjct: 171 DIPSTWSELIALSDQIVADGATPWCIGLESGDASGWPGTDWVEDIMLRTAGPEAYSQWVE 230 Query: 252 GELPFTSPEVKNAVEVMSKIWLNKDYVYGGTKSIVTTAFGDAPKPMFENPPKAWFNLMGN 311 +LPF SPEV NA +I LN +YV GG V+T FGD+P+ +F PP + + N Sbjct: 231 HDLPFNSPEVVNAFNEFGEILLNPEYVNGGAVGAVSTPFGDSPQGIFNEPPSCYMHRQAN 290 Query: 312 FITSFFPETAKVDQDYDWFYLPPIDPQYGKPVLVAGDIYAMFNDRPEVRAVMEFFTTGES 371 FI +FFPE + DYD F LP IDP++G P+LVAGD + MFND PE RA+ME+ T + Sbjct: 291 FIATFFPEETEPRVDYDVFPLPEIDPRFGTPILVAGDAFGMFNDTPEARALMEYLATPQP 350 Query: 372 IKTWVQSGGVIAPMNDASLDWYTSESDRRMAKLVQDASTLRFDGSDLMPGKVGAGTFWKG 431 + W GG I+P S D Y + +++A+++ DA + FDGSD+MPG VG GTFW G Sbjct: 351 HEIWAGLGGFISPHKQVSTDAYPDITSQKIAQILADADVVSFDGSDMMPGAVGTGTFWSG 410 Query: 432 MTDYVSGTATLDKALEQIQSGW 453 + D+ G + D + I++ W Sbjct: 411 IIDFAVGESAED-VTDSIENSW 431 >B1XHV6.1 B1XHV6_SYNP2 ABC transporter, periplasmic binding protein Length = 433 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/394 (43%), Positives = 254/394 (64%), Gaps = 5/394 (1%) Query: 60 KVTMFGPFVDADQVKFESSIKEFEAKTGIDIQYEGSKEFEATINIRVDGGNAPDIADFPQ 119 +VT+FG + Q K E+++ F +TGI++ YEG+ F T+ IRVD GN PD+A FPQ Sbjct: 43 QVTVFGVMIGEQQEKIEAALAPFTEETGIEVVYEGTDTFATTLPIRVDSGNPPDLAMFPQ 102 Query: 120 PGLLASIAKTGKVVDLTGVLDQEKLKANYNKSWLDMSTMDGKDGKIMAGIWNRSNVKSLV 179 PGL+A A+ G++V LT + E L+A Y++SW+ + +++ + G+W R++VKSLV Sbjct: 103 PGLMADFAREGRLVPLTEFMSLEDLQAAYDESWIQLGSVE----NVPYGVWYRASVKSLV 158 Query: 180 WYPKKQFDAAGYTVPETWDDMMALTEQIAKDGDPAWTIGIESGAATGWAATDWIENIMLR 239 WY +QF GY +P TWD+M+AL++++ +G W IG+ESG +TGWA TDW+E IMLR Sbjct: 159 WYNPQQFAVNGYEIPTTWDEMLALSDRLVSEGKTPWCIGMESGDSTGWAGTDWVEEIMLR 218 Query: 240 TTTPENYDKWVKGELPFTSPEVKNAVEVMSKIWLNKDYVYGGTKSIVTTAFGDAPKPMFE 299 T P YD+W+ E+PF P V+NAV + I N+DYVYGG S ++T FGD+ + +F Sbjct: 219 TAGPNVYDQWINHEIPFNDPAVENAVNIFGDIVRNEDYVYGGVVSALSTPFGDSIQGLFG 278 Query: 300 NPPKAWFNLMGNFITSFFPETAKVDQDYDWFYLPPIDPQYGKPVLVAGDIYAMFNDRPEV 359 P + + GNFI +F P +++D D F LP I+P+ G P+LVAGD++AMFND PE Sbjct: 279 EDPNCYLHKQGNFIEAFLPTDINLNEDVDVFPLPQINPEQGLPILVAGDVFAMFNDTPEA 338 Query: 360 RAVMEFFTTGESIKTWVQSGGVIAPMNDASLDWYTSESDRRMAKLVQDASTLRFDGSDLM 419 R +ME+ + + GG ++P L Y ++ R+ A+++ +A +RFD SD+M Sbjct: 339 RQLMEYLASKTPHEVAAGLGGYLSPRQGIDLALYPTDLSRKQAEILGNAEVIRFDASDMM 398 Query: 420 PGKVGAGTFWKGMTDYVSGTATLDKALEQIQSGW 453 PG VG GTFW GM DYV G A + L I++ W Sbjct: 399 PGAVGTGTFWSGMVDYVGG-ADAETVLTNIENSW 431 >B4VH51.1 B4VH51_9CYAN Bacterial extracellular solute-binding protein, putative Length = 429 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 180/407 (44%), Positives = 245/407 (60%), Gaps = 6/407 (1%) Query: 50 LAMKGEYKGTKVTMFGPFVDADQVKFESSIKEFEAKTGIDIQYEGSKEFEATINIRVDGG 109 ++ GE VT+ G + + + F TGI ++YEG+ F + +RVD G Sbjct: 23 CSLPGEQSSKTVTLMGTLTGKGIQEVQQVVAPFTEATGIKVKYEGTDAFTTVLPVRVDAG 82 Query: 110 NAPDIADFPQPGLLASIAKTGKVVDLTGVLDQEKLKANYNKSWLDMSTMDGKDGKIMAGI 169 N PD+A FPQPGL+A+ A+ GK++ + +L +L ++++WL+++ +D + GI Sbjct: 83 NPPDLALFPQPGLMANFARDGKLIPIEQILSSTQLSEAFSQNWLNLARVD----DTLYGI 138 Query: 170 WNRSNVKSLVWYPKKQFDAAGYTVPETWDDMMALTEQIAKDGDPAWTIGIESGAATGWAA 229 W R +KSLVWY F GY VP+TWD+MM L++QI DG W IG SG ATGW Sbjct: 139 WYRIYLKSLVWYSPAAFAEKGYQVPKTWDEMMVLSDQIVADGGVPWCIGFGSGEATGWVG 198 Query: 230 TDWIENIMLRTTTPENYDKWVKGELPFTSPEVKNAVEVMSKIWLNKDYVYGGTKSIVTTA 289 TDWIE+IMLRT PE YD+WV E+PFT P VKNA E I LN DYV GG I + Sbjct: 199 TDWIEDIMLRTVEPEVYDQWVNHEIPFTHPAVKNAFEKFGTIALNPDYVVGGKTGIQSIF 258 Query: 290 FGDAPKPMFENPPKAWFNLMGNFITSFFPETAKVDQDYDWFYLPPIDPQYGKPVLVAGDI 349 FGD+PKP+FE PP + + FI+SFFP+ + +D D F LP IDP G P+LV G I Sbjct: 259 FGDSPKPLFEQPPGCYLHHQATFISSFFPDDVVLGEDVDIFILPSIDPDLGVPLLVGGQI 318 Query: 350 YAMFNDRPEVRAVMEFFTTGESIKTWVQSGGVIAPMNDASLDWYTSESDRRMAK-LVQDA 408 MFND PE R +ME+ + E + G I+P SL+ Y E +R AK L+ D Sbjct: 319 IGMFNDTPEARQLMEYLISVEPHEILAGIKGSISPHKQVSLEVYPDEVTKRQAKLLLSDD 378 Query: 409 STLRFDGSDLMPGKVGAGTFWKGMTDYVSGTATLDKALEQIQSGWNN 455 +R+D SDL+PG VG GTFW G+ DYVSG LD+ L+ I++ ++ Sbjct: 379 ELIRYDASDLLPGAVGTGTFWTGIIDYVSG-QDLDRILQTIEASLSD 424 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,722,807,847 Number of extensions: 117071832 Number of successful extensions: 313102 Number of sequences better than 1.0e-05: 217 Number of HSP's gapped: 312879 Number of HSP's successfully gapped: 217 Length of query: 455 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 316 Effective length of database: 1,751,175,118 Effective search space: 553371337288 Effective search space used: 553371337288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)