BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0003.p (383 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4WLE6.1 B4WLE6_9SYNE ABC transporter, permease protein, putative 273 2e-71 Q4BWC7.1 Q4BWC7_CROWT Binding-protein-dependent transport system... 273 2e-71 Q55472.1 Q55472_SYNY3 Membrane bound sugar transport protein 263 1e-68 B4VIG7.1 B4VIG7_9CYAN ABC transporter, permease protein 262 5e-68 B1XHV5.1 B1XHV5_SYNP2 ABC transporter, permease subunit 259 2e-67 >B4WLE6.1 B4WLE6_9SYNE ABC transporter, permease protein, putative Length = 327 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/300 (48%), Positives = 194/300 (64%), Gaps = 3/300 (1%) Query: 83 IYYTLTWAVEQ-YPDHIRRKVLPYIFIGPAVIILGWLLVLPALRTLYLSFFNASSEKFVG 141 I+Y L VE+ P +R++LP+I++GP++++L LVLP +RT+YLSFFN S +FVG Sbjct: 25 IFYGLNILVEKALPKGTQRRILPWIYVGPSLLLLLVYLVLPTIRTIYLSFFNNDSSRFVG 84 Query: 142 LSNYAAIFSDHLMATALRNNLLWVFIGTLACVSFGLLIAILADRSSYEKIAKSIIFMPMA 201 L NY F+ M A RNNLLW+ + T V GL+IA+L DR YE +AKS+IF+PMA Sbjct: 85 LRNYIFAFTSPDMLIAFRNNLLWLVLVTGISVGLGLIIAVLVDRVRYEPLAKSLIFLPMA 144 Query: 202 ISFVAAGVIWKFVYYYQP-GDEQIGLLNAIVTYFGGEPQAWTSMLQPWNNFFLIVILIWM 260 ISFV A VIW+FVY Y+P G EQIGLLNA+VT+ G EP W + + NNF LI I+IW+ Sbjct: 145 ISFVGASVIWRFVYAYRPAGSEQIGLLNAVVTFLGFEPIGWL-VERDINNFALIAIMIWL 203 Query: 261 QTGFAMVIFSAAIKGVPDDILEAARVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXX 320 QTGF MV+ S+A+KGVP D++EAARVDGA E +IF I++P I Sbjct: 204 QTGFCMVLLSSAVKGVPKDVIEAARVDGANEFQIFRRIIVPMIMPTVTVVSTTVIVLVLK 263 Query: 321 XXDVVMVMTGGQYDTEVVATQFYRQFFMYRNFGYGSTXXXXXXXXXXXXXXXXXRQFRKQ 380 D+V VMTGG DT+V+A++ R+ F +RNFG GS R+FR+Q Sbjct: 264 VFDIVFVMTGGNLDTDVIASRMVREMFNFRNFGRGSAIAVILLIAVIPVMVANIRRFRQQ 323 >Q4BWC7.1 Q4BWC7_CROWT Binding-protein-dependent transport systems inner membrane component Length = 325 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 141/299 (47%), Positives = 188/299 (62%), Gaps = 2/299 (0%) Query: 83 IYYTLTWAVEQYPDHIRRKVLPYIFIGPAVIILGWLLVLPALRTLYLSFFNASSEKFVGL 142 I+Y + + + P +LP+++I PA++IL L+LP ++T YLSFF+ S+ FVGL Sbjct: 24 IFYLANYCIARLPKPWNHNLLPWVYISPAMLILSAYLILPTIQTFYLSFFDGRSQNFVGL 83 Query: 143 SNYAAIFSDHLMATALRNNLLWVFIGTLACVSFGLLIAILADRSSYEKIAKSIIFMPMAI 202 NY F+D M A+RNNLLW+ + T VS GL+IA+L D+ SYE I KS+IF+PMAI Sbjct: 84 KNYLFAFTDKSMLMAVRNNLLWLVLVTGISVSLGLIIAVLVDKVSYEPIVKSLIFLPMAI 143 Query: 203 SFVAAGVIWKFVYYYQP-GDEQIGLLNAIVTYFGGEPQAWTSMLQPWNNFFLIVILIWMQ 261 SFV A VIW+F+Y Y+P GDEQIGLLNAI+ G EP W + + NNF LI+I+IW+ Sbjct: 144 SFVGASVIWRFIYAYRPLGDEQIGLLNAIIVSLGFEPVGWL-VERSVNNFALIIIMIWLY 202 Query: 262 TGFAMVIFSAAIKGVPDDILEAARVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXX 321 TGFAMVI S AIKG+P DI+EAAR+DGA +IF+ I IP I + Sbjct: 203 TGFAMVILSVAIKGIPQDIVEAARIDGANSWQIFWRITIPMIRSTILVVSTTIIILVLKI 262 Query: 322 XDVVMVMTGGQYDTEVVATQFYRQFFMYRNFGYGSTXXXXXXXXXXXXXXXXXRQFRKQ 380 D+V VMTGG TEV+A++ ++ F YRNFG GS R+F+ Q Sbjct: 263 FDIVFVMTGGNNGTEVIASRMIKEMFNYRNFGRGSAIAIILLLLIIPVMISNIRRFQTQ 321 >Q55472.1 Q55472_SYNY3 Membrane bound sugar transport protein Length = 279 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/276 (50%), Positives = 173/276 (62%), Gaps = 2/276 (0%) Query: 106 IFIGPAVIILGWLLVLPALRTLYLSFFNASSEKFVGLSNYAAIFSDHLMATALRNNLLWV 165 +++ PA++ L L+LP L T+YLSFF+ S FVGL NY F+DH M A RNNLLW+ Sbjct: 1 MYVTPALLFLSAYLILPTLETVYLSFFDGRSRNFVGLKNYVFAFTDHTMLVAFRNNLLWL 60 Query: 166 FIGTLACVSFGLLIAILADRSSYEKIAKSIIFMPMAISFVAAGVIWKFVYYYQP-GDEQI 224 + T VS GL+IA+L D+ YE IAKSIIF+PMAISFV A VIWKFVY Y+P G EQI Sbjct: 61 VLVTGISVSLGLIIAVLVDKVRYEAIAKSIIFLPMAISFVGASVIWKFVYAYRPAGAEQI 120 Query: 225 GLLNAIVTYFGGEPQAWTSMLQPWNNFFLIVILIWMQTGFAMVIFSAAIKGVPDDILEAA 284 GLLNAIVT G P W + + NNF LI I+IW+ TGF MVI SAA+KG+P D++EAA Sbjct: 121 GLLNAIVTSLGFAPVGWL-VERSVNNFALIAIMIWLYTGFCMVILSAAVKGIPADVIEAA 179 Query: 285 RVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXXXDVVMVMTGGQYDTEVVATQFYR 344 R+DGA +IF+ I IP I + D+V VMTGG TEV+A+ + Sbjct: 180 RIDGANSWQIFWRITIPMIRSTLLVVSTTMVILVLKVFDIVFVMTGGNQGTEVIASLMIK 239 Query: 345 QFFMYRNFGYGSTXXXXXXXXXXXXXXXXXRQFRKQ 380 + F YRNFG GST R+F+ Q Sbjct: 240 EMFNYRNFGRGSTIAVILLLLIVPVMITNIRRFKAQ 275 >B4VIG7.1 B4VIG7_9CYAN ABC transporter, permease protein Length = 325 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 131/299 (43%), Positives = 185/299 (61%), Gaps = 2/299 (0%) Query: 83 IYYTLTWAVEQYPDHIRRKVLPYIFIGPAVIILGWLLVLPALRTLYLSFFNASSEKFVGL 142 ++Y + + P R ++LP+I++ PA+++L L+LP L T+Y+SF + S+ FVG Sbjct: 24 VFYAMNYLANTLPHKWRSRILPWIYLAPALLVLTAYLILPTLNTIYISFLDRRSQNFVGW 83 Query: 143 SNYAAIFSDHLMATALRNNLLWVFIGTLACVSFGLLIAILADRSSYEKIAKSIIFMPMAI 202 NY F+ M A RNNLLW+ + T V FGL++A+L D+ YE +AKS+IF+PMAI Sbjct: 84 ENYQFAFTSEAMLVAFRNNLLWLVLVTGFSVGFGLILAVLMDKVRYEPLAKSLIFLPMAI 143 Query: 203 SFVAAGVIWKFVYYYQP-GDEQIGLLNAIVTYFGGEPQAWTSMLQPWNNFFLIVILIWMQ 261 SFV A VIW+FVY ++P G QIGLLN I+T G EP W + + NNF LI I+IW+Q Sbjct: 144 SFVGASVIWRFVYAFRPAGAAQIGLLNGIITSLGFEPVGWL-VERSINNFALIAIMIWLQ 202 Query: 262 TGFAMVIFSAAIKGVPDDILEAARVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXX 321 TGF +V+ SAA+KG+P DI+EAAR+DGA EV+IF+ I IP I + Sbjct: 203 TGFCLVLLSAAVKGIPKDIIEAARMDGASEVQIFWRITIPMIRSTLAVVTTTVVIMVLKV 262 Query: 322 XDVVMVMTGGQYDTEVVATQFYRQFFMYRNFGYGSTXXXXXXXXXXXXXXXXXRQFRKQ 380 D+V VMT G TEV+A++ ++ F YR++G GS R+FR+Q Sbjct: 263 FDIVFVMTAGNQGTEVIASRMIKEMFNYRDYGRGSAIAVILLLAIVPIMVVNIRRFRQQ 321 >B1XHV5.1 B1XHV5_SYNP2 ABC transporter, permease subunit Length = 325 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 136/299 (45%), Positives = 189/299 (63%), Gaps = 2/299 (0%) Query: 83 IYYTLTWAVEQYPDHIRRKVLPYIFIGPAVIILGWLLVLPALRTLYLSFFNASSEKFVGL 142 ++Y A+ P +++LP+++I PA+++L L+LP ++T YLSF + S+ FVGL Sbjct: 24 LFYLANIAINALPKPWNQRLLPWVYISPALLLLSAYLILPTMQTFYLSFLDGRSQNFVGL 83 Query: 143 SNYAAIFSDHLMATALRNNLLWVFIGTLACVSFGLLIAILADRSSYEKIAKSIIFMPMAI 202 NY F+D M A +NNLLW+ + T VS GL+IA+L D+ YE I KS+IF+PMAI Sbjct: 84 KNYIFAFTDRAMLIAFKNNLLWLVLVTGVSVSLGLIIAVLVDKVRYEPIIKSLIFLPMAI 143 Query: 203 SFVAAGVIWKFVYYYQP-GDEQIGLLNAIVTYFGGEPQAWTSMLQPWNNFFLIVILIWMQ 261 SFV A VIWKF+Y Y+P GD+QIG+LNA++ FG EP W + Q NNF LI I+IW+ Sbjct: 144 SFVGASVIWKFMYAYKPAGDDQIGVLNALLVNFGFEPVGWI-VEQSVNNFALIAIMIWLY 202 Query: 262 TGFAMVIFSAAIKGVPDDILEAARVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXX 321 TGFAMVI S+A+KG+P++++EAAR+DGA +IF+ I IP I + Sbjct: 203 TGFAMVILSSAVKGIPEEVIEAARIDGANSWQIFWRITIPMIRSTILVVSTTIIILVLKV 262 Query: 322 XDVVMVMTGGQYDTEVVATQFYRQFFMYRNFGYGSTXXXXXXXXXXXXXXXXXRQFRKQ 380 D+V VMTGG Y TEV+A++ ++ F YRNFG GS R+FR Q Sbjct: 263 FDIVFVMTGGNYGTEVIASRMIKEMFNYRNFGRGSAIAIVLLILIIPVMISNIRRFRTQ 321 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,933,943,572 Number of extensions: 69534064 Number of successful extensions: 240283 Number of sequences better than 1.0e-05: 5292 Number of HSP's gapped: 231294 Number of HSP's successfully gapped: 5306 Length of query: 383 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 246 Effective length of database: 1,770,017,148 Effective search space: 435424218408 Effective search space used: 435424218408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)