BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0002.p (363 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9LLI3.1 B9LLI3_CHLSY Binding-protein-dependent transport system... 320 1e-85 A9WJM9.1 A9WJM9_CHLAA Binding-protein-dependent transport system... 320 1e-85 B8GAH9.1 B8GAH9_CHLAD Binding-protein-dependent transport system... 318 5e-85 A9B0V6.1 A9B0V6_HERA2 Binding-protein-dependent transport system... 286 3e-75 B4WLE7.1 B4WLE7_9SYNE ABC transporter, permease protein 284 1e-74 >B9LLI3.1 B9LLI3_CHLSY Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 150/261 (57%), Positives = 200/261 (76%), Gaps = 10/261 (3%) Query: 109 NVQEQGWKTI---PD---FTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTI 162 +V+ GW T+ P+ FT+DNY VL G V G+ A NTLT+ Sbjct: 50 DVKTSGWWTVVTNPEKARFTLDNYRTVLGLPVAGRAAPTGGSRV----GMEVALINTLTV 105 Query: 163 AVPATVIPVLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNG 222 A+PAT+IP+LIA+FAAY FAW+ FPGR+ LF++++AMLV+P+Q++L+P+L+DY +L L G Sbjct: 106 ALPATIIPILIAAFAAYGFAWIDFPGRRALFILVVAMLVVPLQISLVPILRDYVALQLGG 165 Query: 223 SYLGIWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALA 282 +YLG+WLAHT FGLPL Y +YN+IS +P+D+FESAF+DGA+HFTIF+RLILPLS PALA Sbjct: 166 TYLGVWLAHTGFGLPLAVYLLYNYISTIPRDIFESAFLDGATHFTIFTRLILPLSTPALA 225 Query: 283 SIGIFQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPL 342 S IFQFLW WND LV+L+F+G +P VQV++ ++ L+G G +WHLLTS AFISM++PL Sbjct: 226 SFAIFQFLWTWNDLLVALVFLGAEPRVQVVTQRLLSLLGQFGQEWHLLTSGAFISMIVPL 285 Query: 343 AIFFLLQKYFVRGLMGGSVKG 363 +FF LQ++FVRGLM GSVKG Sbjct: 286 IVFFSLQRFFVRGLMAGSVKG 306 >A9WJM9.1 A9WJM9_CHLAA Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 150/261 (57%), Positives = 200/261 (76%), Gaps = 10/261 (3%) Query: 109 NVQEQGWKTI---PD---FTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTI 162 +V+ GW T+ P+ FT+DNY VL G V G+ A NTLT+ Sbjct: 50 DVKTSGWWTVVTNPEKARFTLDNYRTVLGLPVAGRAAPTGGSRV----GMEVALINTLTV 105 Query: 163 AVPATVIPVLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNG 222 A+PAT+IP+LIA+FAAY FAW+ FPGR+ LF++++AMLV+P+Q++L+P+L+DY +L L G Sbjct: 106 ALPATIIPILIAAFAAYGFAWIDFPGRRALFILVVAMLVVPLQISLVPILRDYVALQLGG 165 Query: 223 SYLGIWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALA 282 +YLG+WLAHT FGLPL Y +YN+IS +P+D+FESAF+DGA+HFTIF+RLILPLS PALA Sbjct: 166 TYLGVWLAHTGFGLPLAVYLLYNYISTIPRDIFESAFLDGATHFTIFTRLILPLSTPALA 225 Query: 283 SIGIFQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPL 342 S IFQFLW WND LV+L+F+G +P VQV++ ++ L+G G +WHLLTS AFISM++PL Sbjct: 226 SFAIFQFLWTWNDLLVALVFLGAEPRVQVVTQRLLSLLGQFGQEWHLLTSGAFISMIVPL 285 Query: 343 AIFFLLQKYFVRGLMGGSVKG 363 +FF LQ++FVRGLM GSVKG Sbjct: 286 IVFFSLQRFFVRGLMAGSVKG 306 >B8GAH9.1 B8GAH9_CHLAD Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 318 bits (815), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 149/261 (57%), Positives = 202/261 (77%), Gaps = 10/261 (3%) Query: 109 NVQEQGWKTI---PD---FTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTI 162 +V+ GW ++ PD FT++NY VL + GS V G+ A NTLT+ Sbjct: 50 DVKTSGWWSVVTNPDKARFTLNNYRTVLGLPIPGQSAPTGSSRV----GMDVALINTLTV 105 Query: 163 AVPATVIPVLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNG 222 A+P+T+IP+LIA+FAAY FAW+ FPGR+ LF++++AMLV+P+Q++L+P+L+DY +L L G Sbjct: 106 ALPSTIIPILIAAFAAYGFAWIDFPGRRALFILVVAMLVVPLQISLVPILRDYVALQLGG 165 Query: 223 SYLGIWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALA 282 +YLG+WLAHT FGLPL Y +YN+IS +P+D+FESAF+DGASHFTIF+RLILPLS PALA Sbjct: 166 TYLGVWLAHTGFGLPLAVYLLYNYISTVPRDIFESAFLDGASHFTIFTRLILPLSTPALA 225 Query: 283 SIGIFQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPL 342 S IFQFLW WND LV+L+F+G +P VQV++ ++ L+G G DWHLLT+ AF+SM++PL Sbjct: 226 SFAIFQFLWTWNDLLVALVFLGAEPRVQVVTQRLLGLLGQFGQDWHLLTAGAFVSMVVPL 285 Query: 343 AIFFLLQKYFVRGLMGGSVKG 363 +FF LQ++FVRGLM GSVKG Sbjct: 286 IVFFSLQRFFVRGLMAGSVKG 306 >A9B0V6.1 A9B0V6_HERA2 Binding-protein-dependent transport systems inner membrane component Length = 281 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 157/360 (43%), Positives = 220/360 (61%), Gaps = 80/360 (22%) Query: 4 KKKRKGSKTIVNLVLGVICFIWLLPTLGLFISSFRPAADILQTGWWKVFPHQEWTQGETL 63 + +R S++ V+ + I F+W LPT+G+ +SSFRP D+ +GWW Sbjct: 2 RIQRFFSRSFVHFAVITIAFLWTLPTVGVLVSSFRPENDVKTSGWWNA------------ 49 Query: 64 QLSKDTDLRQPIEVNGQTYTDDQLKAGVKVDDSRLMWENRRARTINVQEQGWKTIPDFTM 123 L+ P E E W T Sbjct: 50 -------LKHPFE-----------------------------------ESVW------TF 61 Query: 124 DNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTIAVPATVIPVLIASFAAYAFAW 183 NY++V++ G+ +AF NTL + +PAT++P+ +A+FAAYAFAW Sbjct: 62 KNYSDVINAN-----------------GIGEAFVNTLVVTIPATILPITVAAFAAYAFAW 104 Query: 184 LRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNGSYLGIWLAHTAFGLPLVTYFM 243 ++FPGR LF ++I ++V+P+QVALIP+L+ YT G+ G++LG+WLAHT FGLPL Y + Sbjct: 105 MKFPGRDWLFAMVIGLMVVPLQVALIPILRLYTQTGIAGTFLGLWLAHTGFGLPLAIYLL 164 Query: 244 YNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIGIFQFLWVWNDYLVSLIFI 303 YN+ISQLP DL ESA IDGAS FT F +++LPLS PA+AS IFQFLW+WND LVSL+F+ Sbjct: 165 YNYISQLPADLIESAKIDGASDFTAFMKIVLPLSTPAIASFAIFQFLWIWNDLLVSLVFL 224 Query: 304 GNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIFFLLQKYFVRGLMGGSVKG 363 G +V+++K+++L GS GN WHLLT+ AF+SM++PLA+FF LQ+YFVRGL+ GSVKG Sbjct: 225 GTN---KVLTVKLSELTGSLGNKWHLLTAGAFVSMVVPLAVFFALQRYFVRGLLAGSVKG 281 >B4WLE7.1 B4WLE7_9SYNE ABC transporter, permease protein Length = 312 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 134/262 (51%), Positives = 188/262 (71%), Gaps = 24/262 (9%) Query: 109 NVQEQGWKTI-------PDFTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLT 161 ++ GW T+ FT+ NY VL + G+ QAF N+L Sbjct: 68 DLTSSGWWTVFVNPFEFTQFTLSNYAQVLFDQ-----------------GMGQAFLNSLV 110 Query: 162 IAVPATVIPVLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLN 221 I+VPATVIP+ IA+FAAYA AW+ FPGR+TLF+I + +LV+P+Q+ LIP+L+ YT+LGL+ Sbjct: 111 ISVPATVIPIAIATFAAYALAWMEFPGRQTLFIITVGLLVVPLQMTLIPILRAYTALGLS 170 Query: 222 GSYLGIWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPAL 281 G+YL +WLAH+A+GLPL Y + N+I LP+DL E+A +DGASH +FSR+I+PLS+PA+ Sbjct: 171 GTYLAVWLAHSAYGLPLGVYLLRNYIGSLPRDLIEAATVDGASHLQVFSRVIVPLSMPAI 230 Query: 282 ASIGIFQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMP 341 AS +FQFLWVWND LV+L+++G V +++ + ++VG RG DW LLT+ AF+SML+P Sbjct: 231 ASFAVFQFLWVWNDLLVALVYLGGNQDVAPVTLVLRNIVGDRGQDWFLLTAGAFVSMLVP 290 Query: 342 LAIFFLLQKYFVRGLMGGSVKG 363 + +FF LQ+YFVRGL+ GSVKG Sbjct: 291 MIVFFALQRYFVRGLLAGSVKG 312 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 6/62 (9%) Query: 4 KKKRKG-----SKTIVNLVLGVICFIWLLPTLGLFISSFRPAADILQTGWWKVFPHQ-EW 57 +K++ G +K V++ + I +W LPTLGL ISSFRPA D+ +GWW VF + E+ Sbjct: 25 RKEKSGFEQFVAKAPVHIAVVAIAVLWTLPTLGLLISSFRPAEDLTSSGWWTVFVNPFEF 84 Query: 58 TQ 59 TQ Sbjct: 85 TQ 86 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,227,649,543 Number of extensions: 93588040 Number of successful extensions: 348542 Number of sequences better than 1.0e-05: 7053 Number of HSP's gapped: 342263 Number of HSP's successfully gapped: 7063 Length of query: 363 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 226 Effective length of database: 1,770,017,148 Effective search space: 400023875448 Effective search space used: 400023875448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)