BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0014.p (194 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BVI3.1 C3BVI3_9BACI Phosphoglycerate mutase 213 5e-54 C3BE48.1 C3BE48_BACMY Phosphoglycerate mutase 212 1e-53 C3AWM6.1 C3AWM6_BACMY Phosphoglycerate mutase 212 1e-53 C1RRL7.1 C1RRL7_9SPHI Fructose-2,6-bisphosphatase 191 2e-47 C2W7Z8.1 C2W7Z8_BACCE Phosphoglycerate mutase 187 4e-46 >C3BVI3.1 C3BVI3_9BACI Phosphoglycerate mutase Length = 191 Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 103/191 (53%), Positives = 137/191 (71%) Query: 1 MTTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGEQWDYIYSSDLLRAV 60 MTT+G+IRHGST WNKEGR QG+++ PLD+ GL +A +AERL+ E+WD IYSSDLLRA Sbjct: 1 MTTLGIIRHGSTHWNKEGRAQGNSNIPLDQAGLSEAYKLAERLATEKWDVIYSSDLLRAK 60 Query: 61 QTAEVISKRLGIPIAGQVPGVREMNGGLIEGTTEDERVQRWGSGWKSMDMGLESDESGQQ 120 QTAE I K + P +RE++GG IEGTTEDER+ +WG W+ +D+G+ES +S + Sbjct: 61 QTAEAIEKNIENIQIHLEPRLREVSGGQIEGTTEDERISKWGDNWRELDLGIESADSVKA 120 Query: 121 RGSRAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGLDVGELLKNTSITHIVKDNSGWT 180 R IEEI ++P K ILIVSHG+ ++ L++LVP L + E KNTSIT I+K +GW Sbjct: 121 RAIPFIEEITYKYPNKNILIVSHGSFIKQLLKELVPHLSMIESPKNTSITKIIKIENGWD 180 Query: 181 CALYNCVAHME 191 LYNC H++ Sbjct: 181 PELYNCTVHLD 191 >C3BE48.1 C3BE48_BACMY Phosphoglycerate mutase Length = 191 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 102/191 (53%), Positives = 137/191 (71%) Query: 1 MTTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGEQWDYIYSSDLLRAV 60 MTT+G+IRHGST WNKEGR QG+++ PLD+ GL +A +AERL+ E+W+ IYSSDLLRA Sbjct: 1 MTTLGIIRHGSTHWNKEGRAQGNSNIPLDQAGLSEAYKLAERLATEKWNVIYSSDLLRAK 60 Query: 61 QTAEVISKRLGIPIAGQVPGVREMNGGLIEGTTEDERVQRWGSGWKSMDMGLESDESGQQ 120 QTAE I K + P +RE++GG IEGTTEDER+ +WG W+ +D+G+ES +S + Sbjct: 61 QTAEAIEKNIENIEIHLDPRLREVSGGQIEGTTEDERISKWGDNWRELDLGIESADSVKA 120 Query: 121 RGSRAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGLDVGELLKNTSITHIVKDNSGWT 180 R IEEI ++P K ILIVSHG+ ++ L++LVP L + E KNTSIT I+K +GW Sbjct: 121 RAIPFIEEITYKYPNKNILIVSHGSFIKQLLKELVPHLSMIESPKNTSITKIIKIENGWD 180 Query: 181 CALYNCVAHME 191 LYNC H++ Sbjct: 181 SELYNCTVHLD 191 >C3AWM6.1 C3AWM6_BACMY Phosphoglycerate mutase Length = 191 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 102/191 (53%), Positives = 137/191 (71%) Query: 1 MTTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGEQWDYIYSSDLLRAV 60 MTT+G+IRHGST WNKEGR QG+++ PLD+ GL +A +AERL+ E+W+ IYSSDLLRA Sbjct: 1 MTTLGIIRHGSTHWNKEGRAQGNSNIPLDQAGLSEAYKLAERLATEKWNVIYSSDLLRAK 60 Query: 61 QTAEVISKRLGIPIAGQVPGVREMNGGLIEGTTEDERVQRWGSGWKSMDMGLESDESGQQ 120 QTAE I K + P +RE++GG IEGTTEDER+ +WG W+ +D+G+ES +S + Sbjct: 61 QTAEAIEKNIENIEIHLDPRLREVSGGQIEGTTEDERISKWGDNWRELDLGIESADSVKA 120 Query: 121 RGSRAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGLDVGELLKNTSITHIVKDNSGWT 180 R IEEI ++P K ILIVSHG+ ++ L++LVP L + E KNTSIT I+K +GW Sbjct: 121 RAIPFIEEITYKYPNKNILIVSHGSFIKQLLKELVPHLSMIESPKNTSITKIIKIENGWD 180 Query: 181 CALYNCVAHME 191 LYNC H++ Sbjct: 181 SELYNCTVHLD 191 >C1RRL7.1 C1RRL7_9SPHI Fructose-2,6-bisphosphatase Length = 191 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/190 (47%), Positives = 128/190 (67%) Query: 1 MTTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGEQWDYIYSSDLLRAV 60 MT I LIRHGSTAWNKEG++QG TD LD EGL+QA + RLS E WD +Y+S L RA Sbjct: 1 MTRIALIRHGSTAWNKEGKMQGSTDIALDNEGLEQARKLGIRLSDESWDIVYTSHLSRAK 60 Query: 61 QTAEVISKRLGIPIAGQVPGVREMNGGLIEGTTEDERVQRWGSGWKSMDMGLESDESGQQ 120 +T E+I+ LGI + + E++GG EGTTE +R+ +WG+GW+ +++G+E++++ Sbjct: 61 RTGEIIAAELGIEDVREDKRIMEVSGGQTEGTTEADRIAKWGTGWRQLELGMETEQAVLT 120 Query: 121 RGSRAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGLDVGELLKNTSITHIVKDNSGWT 180 RG ++++ H GK I+IVSHG+ +R L+KL P L LKNTS+T ++ W Sbjct: 121 RGMAFLDDLMQEHAGKHIVIVSHGSFIRHLLKKLAPSLVQDSNLKNTSVTRFTVNDDVWE 180 Query: 181 CALYNCVAHM 190 C LYNC AH+ Sbjct: 181 CELYNCTAHL 190 >C2W7Z8.1 C2W7Z8_BACCE Phosphoglycerate mutase Length = 191 Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 132/190 (69%) Query: 1 MTTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGEQWDYIYSSDLLRAV 60 MTT+G+IRHGST WNKEGR QG+++ PLD +G A +AERL+ E WD IYSSDLLRA Sbjct: 1 MTTLGIIRHGSTHWNKEGRAQGNSNIPLDPDGFSDAYKLAERLATENWDIIYSSDLLRAK 60 Query: 61 QTAEVISKRLGIPIAGQVPGVREMNGGLIEGTTEDERVQRWGSGWKSMDMGLESDESGQQ 120 QTAE I K + P +RE GG IEGTTE+ER+ +WG W+++++G+ES +S Sbjct: 61 QTAEAIGKNIDNIEIYLDPRLREAGGGEIEGTTEEERISKWGENWRNLNLGIESADSVLA 120 Query: 121 RGSRAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGLDVGELLKNTSITHIVKDNSGWT 180 R IEEI +HP K +LIVSHGA ++ L++LVP L++ + LKNTSIT I K +GW Sbjct: 121 RALPLIEEITYKHPNKNVLIVSHGAFIKYLLKELVPQLNMTDSLKNTSITKIRKLENGWD 180 Query: 181 CALYNCVAHM 190 LYNC H+ Sbjct: 181 SELYNCTIHL 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,194,690,062 Number of extensions: 47701757 Number of successful extensions: 113209 Number of sequences better than 1.0e-05: 2370 Number of HSP's gapped: 112484 Number of HSP's successfully gapped: 2408 Length of query: 194 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 66 Effective length of database: 1,854,806,283 Effective search space: 122417214678 Effective search space used: 122417214678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)