BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0010.p (330 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K875.1 B3K875_9BACI Sensor protein EC=2.7.13.3 370 e-101 B3K514.1 B3K514_9BACI Sensor protein EC=2.7.13.3 303 2e-80 C0ZK70.1 C0ZK70_BREBN Two-component sensor histidine kinase EC=2... 302 3e-80 Q81D43.1 Q81D43_BACCR Sensor protein EC=2.7.13.3 295 3e-78 A9VHM9.1 A9VHM9_BACWK Sensor protein EC=2.7.13.3 295 4e-78 >B3K875.1 B3K875_9BACI Sensor protein EC=2.7.13.3 Length = 335 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/330 (53%), Positives = 234/330 (70%) Query: 1 VRLFLKDQRPLLLFYLLQMILVPVLYYLSGESRPLSIILYGMXXXXXXXXXXXXXXXIQH 60 ++LFL++ PL+LF+ +QM+LVP+LY+L+GE RP +++LYG+ + H Sbjct: 1 MKLFLREHLPLMLFFAVQMLLVPLLYWLTGEGRPFTVVLYGVLLSSVVLLVYLVYRYLSH 60 Query: 61 HKLYSRLAQPAAAPGELSVPLDDAPLSEAVSELLQATHRHYQEQLQSHISRMDQHIIFIN 120 +Y L+ + + PL DAPL EA+ E + R Y+EQL H S DQH+ F+N Sbjct: 61 RTMYQELSSQELSEEFSNPPLGDAPLPEAIHERISHYERLYREQLHRHQSGTDQHLAFVN 120 Query: 121 RWVHQMKTPLSVIQLTLQELDDEAAGSIQEELERLRKGLEMVIYTSRLERFEDDFQVQSL 180 RWVHQMKTPLSVIQLTL E+++ A I+EELER+RKGLEMV+YT+RL+RFE DF V+++ Sbjct: 121 RWVHQMKTPLSVIQLTLDEVEEAPAEHIREELERIRKGLEMVLYTARLDRFEQDFAVEAV 180 Query: 181 PLRRIISEAVAENRRLFIRRGIKVDIRVDESLTVYSDAKWLMFMLTQILVNAVNYTSGSG 240 LR +SE+V ENR+LFIR+GI R+D+ ++VY+DAKW FML QIL NAVNY+ G Sbjct: 181 GLRAAVSESVVENRKLFIRKGITPVFRIDDRISVYTDAKWFRFMLGQILTNAVNYSGSPG 240 Query: 241 KTVAVTAQAMGKDIQLDIADQGIGISSEDLKRVFNPYFTGERGRQYHESTGMGLYLVREI 300 K + TA+ GK I+L I D+GIGI+ ED+ RVF+PYFTGERGRQYHESTGMGLYLVREI Sbjct: 241 KKIQFTAEEAGKHIKLRIRDEGIGIAPEDINRVFHPYFTGERGRQYHESTGMGLYLVREI 300 Query: 301 CSRLGHKVGLESKPGEGTTVRIIFNGTGLQ 330 +L H V LES GEGTTV + +Q Sbjct: 301 AHKLDHSVELESTLGEGTTVILTLRTAAIQ 330 >B3K514.1 B3K514_9BACI Sensor protein EC=2.7.13.3 Length = 335 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 153/327 (46%), Positives = 213/327 (65%), Gaps = 4/327 (1%) Query: 1 VRLFLKDQRPLLLFYLLQMILVPVLYYLSGESRPLSIILYGMXXXXXXXXXXXXXXXIQH 60 +RLFL++QRPL++ Y+ Q+++V ++Y L G R L++ LY I + Sbjct: 1 MRLFLQEQRPLMIVYIAQLLVVTLIYRLDG-YRNLTVSLYAGIISLLLLVGYLAFRFIAN 59 Query: 61 HKLYSRLAQP---AAAPGELSVPLDDAPLSEAVSELLQATHRHYQEQLQSHISRMDQHII 117 Y RL QP + GE S PL+EA+ +LL+ RHY L ++ +++ H+ Sbjct: 60 RSFYKRLEQPLPGESLTGESSAESSHTPLAEALHQLLKTQFRHYTTDLHNYKHKIEGHLQ 119 Query: 118 FINRWVHQMKTPLSVIQLTLQELDDEAAGSIQEELERLRKGLEMVIYTSRLERFEDDFQV 177 FIN+W HQMKTP+SVI L LQ+ DD +I +EL+RL+KGL++V+YT+RL+ FE DF V Sbjct: 120 FINQWAHQMKTPISVIHLILQDDDDPRFAAIGDELDRLKKGLDLVLYTARLDTFERDFHV 179 Query: 178 QSLPLRRIISEAVAENRRLFIRRGIKVDIRVDESLTVYSDAKWLMFMLTQILVNAVNYTS 237 ++LPL+RI+ +E +RLFIRR + IR+D LTV +D KWL F+LTQ+L NAV YT Sbjct: 180 ENLPLQRIVRNVTSEQKRLFIRRRMYPSIRIDSGLTVATDEKWLSFVLTQLLTNAVRYTL 239 Query: 238 GSGKTVAVTAQAMGKDIQLDIADQGIGISSEDLKRVFNPYFTGERGRQYHESTGMGLYLV 297 T+ + L+I D+GIGI DL RVF+PYFTGE GR++ ESTGMGL+LV Sbjct: 240 KEQGTLFFNGYTRENQVVLEIRDEGIGIPQSDLPRVFDPYFTGENGRRFQESTGMGLFLV 299 Query: 298 REICSRLGHKVGLESKPGEGTTVRIIF 324 ++IC +LGH +ESK EGTTVRIIF Sbjct: 300 KQICDKLGHAFEIESKVDEGTTVRIIF 326 >C0ZK70.1 C0ZK70_BREBN Two-component sensor histidine kinase EC=2.7.3.- Length = 338 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 146/326 (44%), Positives = 215/326 (65%), Gaps = 1/326 (0%) Query: 1 VRLFLKDQRPLLLFYLLQMILVPVLYYLSGESRPLSIILYGMXXXXXXXXXXXXXXXIQH 60 ++LFL+DQ P F+L+Q+IL+ +++ L G S+++Y M + H Sbjct: 1 MKLFLRDQWPFAAFFLVQLILLIMIFALDGYWNE-SLMIYVMFLSIFFAGAFLVVRYLSH 59 Query: 61 HKLYSRLAQPAAAPGELSVPLDDAPLSEAVSELLQATHRHYQEQLQSHISRMDQHIIFIN 120 +Y RL++P + EL+ ++PL A+ ++ Q +R Y+EQL ++ ++ H FI Sbjct: 60 RTIYQRLSKPVESLEELTQTYGNSPLCRAMDDISQEQYRLYKEQLHAYENKQRDHTTFIQ 119 Query: 121 RWVHQMKTPLSVIQLTLQELDDEAAGSIQEELERLRKGLEMVIYTSRLERFEDDFQVQSL 180 +WVHQMKTP+SVI L LQ DD A S++EE++R+++GLE V+Y +RL+RFE DF ++ + Sbjct: 120 QWVHQMKTPISVIHLLLQNEDDPTAESVREEVDRIKRGLETVLYIARLDRFEQDFLIEPV 179 Query: 181 PLRRIISEAVAENRRLFIRRGIKVDIRVDESLTVYSDAKWLMFMLTQILVNAVNYTSGSG 240 LR ++ +AEN+RLFIR + +++VDE+ V SD KWL F+L Q+L NAV Y++G Sbjct: 180 TLRSLVQNVLAENKRLFIRNQVYPEVKVDENWRVESDDKWLAFVLNQLLTNAVRYSAGKS 239 Query: 241 KTVAVTAQAMGKDIQLDIADQGIGISSEDLKRVFNPYFTGERGRQYHESTGMGLYLVREI 300 V + A G L++ D GIGI +ED+ RVF PYFTGE GR+Y ESTGMGLYLV+EI Sbjct: 240 NKVTIRAYERGAHAILEVQDYGIGIPAEDIHRVFKPYFTGENGRKYPESTGMGLYLVKEI 299 Query: 301 CSRLGHKVGLESKPGEGTTVRIIFNG 326 C RL H V +ES+ GEGTTVRI+ + Sbjct: 300 CGRLHHGVEMESEVGEGTTVRIVLSA 325 >Q81D43.1 Q81D43_BACCR Sensor protein EC=2.7.13.3 Length = 327 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 144/324 (44%), Positives = 208/324 (64%), Gaps = 1/324 (0%) Query: 1 VRLFLKDQRPLLLFYLLQMILVPVLYYLSGESRPLSIILYGMXXXXXXXXXXXXXXXIQH 60 +RLF++D PL+ F ++Q++ + ++Y+ G + ++ LY M H Sbjct: 2 IRLFIRDHIPLICFTIIQLLAIFLVYWFDGHNH-ITTALYAMFLGVFFMGSYLVFRYFTH 60 Query: 61 HKLYSRLAQPAAAPGELSVPLDDAPLSEAVSELLQATHRHYQEQLQSHISRMDQHIIFIN 120 Y RLA P + E D A +S A+ ELL+ +RHYQ QLQ + + H+ F+N Sbjct: 61 RSFYERLANPMQSLDESVQKSDFAAVSAALQELLEVQYRHYQNQLQMQERKNNDHLTFMN 120 Query: 121 RWVHQMKTPLSVIQLTLQELDDEAAGSIQEELERLRKGLEMVIYTSRLERFEDDFQVQSL 180 +W+HQMKTPLSVI+L Q+ D SI EE +RL+KGLEM +Y +RLE F DF V+ + Sbjct: 121 QWIHQMKTPLSVIELITQDEVDSRFESINEETDRLKKGLEMALYVARLEAFTQDFYVERV 180 Query: 181 PLRRIISEAVAENRRLFIRRGIKVDIRVDESLTVYSDAKWLMFMLTQILVNAVNYTSGSG 240 L +I++++V E++R FIR + ++ +D+ +TV SDAKWL F++ QIL NA+ Y+SGS Sbjct: 181 QLHKIVNDSVHEHKRFFIRNFVYPELEIDKDITVESDAKWLQFLIGQILSNAIKYSSGSR 240 Query: 241 KTVAVTAQAMGKDIQLDIADQGIGISSEDLKRVFNPYFTGERGRQYHESTGMGLYLVREI 300 + + V A G ++ L+IAD G+GI +DL RVF P+FTGE GR + ESTGMGLYLV EI Sbjct: 241 EKIKVKACKEGNNVILEIADNGVGIPKQDLPRVFKPFFTGENGRDFKESTGMGLYLVYEI 300 Query: 301 CSRLGHKVGLESKPGEGTTVRIIF 324 +LGH V + S+ G+GT VRIIF Sbjct: 301 TKQLGHSVEIYSEVGKGTVVRIIF 324 >A9VHM9.1 A9VHM9_BACWK Sensor protein EC=2.7.13.3 Length = 327 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 144/324 (44%), Positives = 207/324 (63%), Gaps = 1/324 (0%) Query: 1 VRLFLKDQRPLLLFYLLQMILVPVLYYLSGESRPLSIILYGMXXXXXXXXXXXXXXXIQH 60 +RLF++D PL+ F +Q++ + ++Y+ G + +S LY M H Sbjct: 2 IRLFIRDHIPLICFTAIQLLAIFLVYWFDGHNH-ISTALYAMFLGAFFMVSYLVFRYFTH 60 Query: 61 HKLYSRLAQPAAAPGELSVPLDDAPLSEAVSELLQATHRHYQEQLQSHISRMDQHIIFIN 120 Y RLA P + E D A LS A+ +LL+ +RHYQ QLQ + + H+ F+N Sbjct: 61 RSFYERLANPLQSLDESVQKSDFAVLSTALQDLLEVQYRHYQNQLQLQERKNNDHLTFMN 120 Query: 121 RWVHQMKTPLSVIQLTLQELDDEAAGSIQEELERLRKGLEMVIYTSRLERFEDDFQVQSL 180 +W+HQMKTPLSVI+L Q+ D SI EE +RL+KGLEM +Y +RLE F DF V+ + Sbjct: 121 QWIHQMKTPLSVIELITQDEVDSRFESINEETDRLKKGLEMALYVARLEAFTQDFYVERV 180 Query: 181 PLRRIISEAVAENRRLFIRRGIKVDIRVDESLTVYSDAKWLMFMLTQILVNAVNYTSGSG 240 L +I++++V E++R FIR + ++ +D+S+TV SDAKWL F++ QI+ NA+ Y+SGS Sbjct: 181 QLHKIVNDSVHEHKRFFIRNFVYPELEIDKSITVESDAKWLQFLIGQIISNAIKYSSGSR 240 Query: 241 KTVAVTAQAMGKDIQLDIADQGIGISSEDLKRVFNPYFTGERGRQYHESTGMGLYLVREI 300 + + V + G + L+I D G+GI +DL RVF P+FTGE GR + ESTGMGLYLV EI Sbjct: 241 EKIKVKVRKEGNTVVLEITDSGVGIPKQDLPRVFKPFFTGENGRDFKESTGMGLYLVYEI 300 Query: 301 CSRLGHKVGLESKPGEGTTVRIIF 324 +LGH VG+ S+ G+GT VRIIF Sbjct: 301 TKQLGHSVGIHSEVGKGTVVRIIF 324 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,790,680,883 Number of extensions: 68851471 Number of successful extensions: 285015 Number of sequences better than 1.0e-05: 15900 Number of HSP's gapped: 281321 Number of HSP's successfully gapped: 15929 Length of query: 330 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 194 Effective length of database: 1,779,438,163 Effective search space: 345211003622 Effective search space used: 345211003622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)