BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0003.p (259 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K876.1 B3K876_9BACI ABC transporter related 436 e-121 C0ZK71.1 C0ZK71_BREBN ABC transporter ATP-binding protein 369 e-100 C3FKP9.1 C3FKP9_BACTB ABC transporter ATP-binding protein yxdL 350 1e-94 C3D244.1 C3D244_BACTU ABC transporter ATP-binding protein yxdL 350 1e-94 C3CJ69.1 C3CJ69_BACTU ABC transporter ATP-binding protein yxdL 350 1e-94 >B3K876.1 B3K876_9BACI ABC transporter related Length = 256 Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/256 (82%), Positives = 233/256 (91%) Query: 4 MNVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSS 63 M++LEV ALNKVY GKV TQALTDIHL+I++GEFVGIMGPSGSGKTTLLNMVSTID+PSS Sbjct: 1 MDILEVKALNKVYAGKVATQALTDIHLTIKEGEFVGIMGPSGSGKTTLLNMVSTIDRPSS 60 Query: 64 GVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMD 123 G V IGGS+PY M K ELA FRRRQLGFVFQDFNLL+TLTVAENIVLPLTLD R L +M+ Sbjct: 61 GEVKIGGSNPYAMKKSELAHFRRRQLGFVFQDFNLLDTLTVAENIVLPLTLDRRPLKDME 120 Query: 124 ALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRI 183 +LL + A RL I++ILNKR YEISGGQRQRTAIARA+I SP ++LADEPTGALDSNSSRI Sbjct: 121 SLLQQTASRLGIREILNKRVYEISGGQRQRTAIARAIIGSPLLLLADEPTGALDSNSSRI 180 Query: 184 VMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDT 243 VMESL +IN ++ TTLMLVTHDPLAASYCNRIVFIKDG+LAAEIHRG+NRQAFFQKIIDT Sbjct: 181 VMESLAEINERDRTTLMLVTHDPLAASYCNRIVFIKDGKLAAEIHRGENRQAFFQKIIDT 240 Query: 244 LSFWGGNSHELSSIRV 259 LSFWGGN+ ELSSIRV Sbjct: 241 LSFWGGNTSELSSIRV 256 >C0ZK71.1 C0ZK71_BREBN ABC transporter ATP-binding protein Length = 256 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/256 (67%), Positives = 220/256 (85%) Query: 4 MNVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSS 63 M +L V +L+K+Y GKV +ALTDI SI +GEFVGIMGPSGSGKTTLLNM+STID P+S Sbjct: 1 MEMLAVNSLSKIYGGKVTYRALTDIDFSIRKGEFVGIMGPSGSGKTTLLNMISTIDTPTS 60 Query: 64 GVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMD 123 G V + G++P+ + K +LALFRRR+LGFVFQDFNLL+TLT+ ENIVLPLTLDN K+A M+ Sbjct: 61 GAVLLNGTNPHHLKKDKLALFRRRELGFVFQDFNLLDTLTIGENIVLPLTLDNEKVAVME 120 Query: 124 ALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRI 183 L VA++L I+DIL KRT+E+SGGQRQRTAIARA+I SP+++LADEPTG LDS SSR Sbjct: 121 EKLQSVAEKLGIQDILEKRTFEVSGGQRQRTAIARAIIHSPSLLLADEPTGNLDSKSSRN 180 Query: 184 VMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDT 243 VME+LE IN+++ TT+M+VTHD LAASYC+R++FIKDG+L E++RG++RQ FFQKIID+ Sbjct: 181 VMETLEAINKRDNTTMMMVTHDALAASYCHRVIFIKDGQLHNEMYRGESRQVFFQKIIDS 240 Query: 244 LSFWGGNSHELSSIRV 259 LSF GGN+++LS+IRV Sbjct: 241 LSFLGGNTYDLSTIRV 256 >C3FKP9.1 C3FKP9_BACTB ABC transporter ATP-binding protein yxdL Length = 256 Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/256 (64%), Positives = 209/256 (81%) Query: 4 MNVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSS 63 M +L+ +++KVY GKV +AL DI LSI++GEFVGIMGPSGSGKTTLLNMVSTID PSS Sbjct: 1 MEILQANSISKVYKGKVPYKALVDIDLSIQEGEFVGIMGPSGSGKTTLLNMVSTIDSPSS 60 Query: 64 GVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMD 123 G + I G++P+ ++ +ELALFRR+QLGFVFQ FNLL TLTV ENIVLP+TLD + EM+ Sbjct: 61 GEILINGTNPFQLSSEELALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 120 Query: 124 ALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRI 183 L ++A++LNI DILNKRT+EISGGQ QRTAIARA++ P ++LADEPTG LDS SS Sbjct: 121 KRLEEIAEKLNITDILNKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 180 Query: 184 VMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDT 243 VME L+ +N++E T+MLVTHDP AAS+C+R+VFIKDG+L EI+ G++RQAF+QKI+D Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVVFIKDGQLYNEIYCGESRQAFYQKIMDV 240 Query: 244 LSFWGGNSHELSSIRV 259 LS GG H+ SS+R+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >C3D244.1 C3D244_BACTU ABC transporter ATP-binding protein yxdL Length = 256 Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/256 (64%), Positives = 209/256 (81%) Query: 4 MNVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSS 63 M +L+ +++KVY GKV +AL DI LSI++GEFVGIMGPSGSGKTTLLNMVSTID PSS Sbjct: 1 MEILQANSISKVYKGKVPYKALVDIDLSIQEGEFVGIMGPSGSGKTTLLNMVSTIDSPSS 60 Query: 64 GVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMD 123 G + I G++P+ ++ +ELALFRR+QLGFVFQ FNLL TLTV ENIVLP+TLD + EM+ Sbjct: 61 GEILINGTNPFQLSSEELALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 120 Query: 124 ALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRI 183 L ++A++LNI DILNKRT+EISGGQ QRTAIARA++ P ++LADEPTG LDS SS Sbjct: 121 KRLEEIAEKLNITDILNKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 180 Query: 184 VMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDT 243 VME L+ +N++E T+MLVTHDP AAS+C+R+VFIKDG+L EI+ G++RQAF+QKI+D Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVVFIKDGQLYNEIYCGESRQAFYQKIMDV 240 Query: 244 LSFWGGNSHELSSIRV 259 LS GG H+ SS+R+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >C3CJ69.1 C3CJ69_BACTU ABC transporter ATP-binding protein yxdL Length = 256 Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/256 (64%), Positives = 209/256 (81%) Query: 4 MNVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSS 63 M +L+ +++KVY GKV +AL DI LSI++GEFVGIMGPSGSGKTTLLNMVSTID PSS Sbjct: 1 MEILQANSISKVYKGKVPYKALVDIDLSIQEGEFVGIMGPSGSGKTTLLNMVSTIDSPSS 60 Query: 64 GVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMD 123 G + I G++P+ ++ +ELALFRR+QLGFVFQ FNLL TLTV ENIVLP+TLD + EM+ Sbjct: 61 GEILINGTNPFQLSSEELALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 120 Query: 124 ALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRI 183 L ++A++LNI DILNKRT+EISGGQ QRTAIARA++ P ++LADEPTG LDS SS Sbjct: 121 KRLEEIAEKLNITDILNKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 180 Query: 184 VMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDT 243 VME L+ +N++E T+MLVTHDP AAS+C+R+VFIKDG+L EI+ G++RQAF+QKI+D Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVVFIKDGQLYNEIYCGESRQAFYQKIMDV 240 Query: 244 LSFWGGNSHELSSIRV 259 LS GG H+ SS+R+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,392,067,131 Number of extensions: 54060900 Number of successful extensions: 517854 Number of sequences better than 1.0e-05: 97581 Number of HSP's gapped: 395963 Number of HSP's successfully gapped: 106012 Length of query: 259 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 126 Effective length of database: 1,807,701,208 Effective search space: 227770352208 Effective search space used: 227770352208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)