BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0010.p (502 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I129.1 B8I129_CLOCE Putative phage minor capsid protein 731 0.0 B8I909.1 B8I909_CLOCE Putative phage minor capsid protein 730 0.0 B1RBB6.1 B1RBB6_CLOPE Putative phage minor capsid protein 615 e-174 Q0TSJ2.1 Q0TSJ2_CLOP1 Putative phage minor capsid protein 587 e-166 C2KWH3.1 C2KWH3_9FIRM Phage minor capsid protein 416 e-114 >B8I129.1 B8I129_CLOCE Putative phage minor capsid protein Length = 500 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/487 (72%), Positives = 420/487 (86%), Gaps = 7/487 (1%) Query: 1 VGWFKNMV----MKMLRINPAPESQIITIQEPYSYKANVLRNRLWYRGDPSELDQFYKQS 56 +GW ++MV +K+L+I PA E++ IT++EP+S++ N LRNRLWYRG+PSEL+QF+KQ+ Sbjct: 1 MGWIRDMVTKAAIKILKIQPALENRNITVREPFSFETNALRNRLWYRGEPSELEQFFKQT 60 Query: 57 VTDSVGKSRFWAAVPTAGLGIRKIHSGLPAMVADRLSDIVVADMDAITLKVQAETATWEK 116 DSV K RFWAAVP+ GLGIRKIHSGLP+M+ADRLSDIV+AD+D I LK QAET W++ Sbjct: 61 AFDSVSKGRFWAAVPSVGLGIRKIHSGLPSMIADRLSDIVIADLDGIELKNQAETDLWDE 120 Query: 117 ISEDNDFPELLAGAVTEALFVGDGAFKITVDPELSEYPLIEFYSGDQVEYKRTRGRLQEV 176 IS+DN +LL A+TE L GDGAFKIT+D ++S+YPLIEFYSG++V+Y RGRLQEV Sbjct: 121 ISKDNKANKLLGEAITETLVEGDGAFKITIDTDVSQYPLIEFYSGERVDYTYMRGRLQEV 180 Query: 177 IFWTDYTVSSKDYRLEETFGLGYIRSRLLDAYGKEVPLSVVPETAQLKPEITYDGDFIMA 236 IF+TDY V +K+YRL ET+G GYIR +L D+YGKEV L++VPETA LK +ITY GDFIMA Sbjct: 181 IFYTDYAVKAKEYRLAETYGKGYIRYKLFDSYGKEVALTMVPETAALK-DITYTGDFIMA 239 Query: 237 VPLMVFKSTKWPGRGKSLFDT-KSDNFDALDEVVSQWMDAIRSGRVQKYIPEDMIPKNPE 295 VPLM FKS KW GRGKSLFD KSD+FDALDEV+SQW+DAIRSGRVQKYIPED+IPKNP Sbjct: 240 VPLMFFKSPKWQGRGKSLFDGGKSDDFDALDEVISQWIDAIRSGRVQKYIPEDLIPKNPN 299 Query: 296 TGELMRPNPFDNQFIRINSTFAEEAKGQINLVQPQILYEAFVASYASAVDMCLQGIISPS 355 TGEL++PN FDNQFI+I S+ AE+AK QI+ VQPQI++EAFVASYAS +D+CLQGIISPS Sbjct: 300 TGELLKPNAFDNQFIKIGSSLAEDAKTQISTVQPQIMFEAFVASYASILDVCLQGIISPS 359 Query: 356 TLGIDLKKTDNAEAQREKEKATLYTRGKIVERLNEVIPQLVQTVLKVYDTMQSRAAGKYE 415 TLGIDLKKTDNAEAQREKEKATLYTRGKI++ LNEVIPQLV VLKVYD MQ AG+YE Sbjct: 360 TLGIDLKKTDNAEAQREKEKATLYTRGKIIDALNEVIPQLVAIVLKVYDLMQEHTAGEYE 419 Query: 416 ASVTFGEYASPSFDAVVETVGKARTFGVMSIERAVEEMYGDTWTAEEKAEEVARLKAEQA 475 ASV FGEYASPSFD VVETVGKA+++G+MS+ER VEE+YGDTWT E+KA+EVARLK+EQA Sbjct: 420 ASVAFGEYASPSFDTVVETVGKAKSYGIMSLERCVEELYGDTWTDEDKAKEVARLKSEQA 479 Query: 476 PPTFDEP 482 P FDEP Sbjct: 480 -PAFDEP 485 >B8I909.1 B8I909_CLOCE Putative phage minor capsid protein Length = 500 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/487 (72%), Positives = 419/487 (86%), Gaps = 7/487 (1%) Query: 1 VGWFKNMV----MKMLRINPAPESQIITIQEPYSYKANVLRNRLWYRGDPSELDQFYKQS 56 +GW ++MV +K+L+I PA E++ IT++EP+S++ N LRNRLWYRG+PSEL+QF+KQ+ Sbjct: 1 MGWIRDMVTKAAIKILKIQPALENRNITVREPFSFETNALRNRLWYRGEPSELEQFFKQT 60 Query: 57 VTDSVGKSRFWAAVPTAGLGIRKIHSGLPAMVADRLSDIVVADMDAITLKVQAETATWEK 116 DSV K RFWAAVP+ GLGIRKIHSGLP+M+ADRLSDIV+AD+D I LK QAET W++ Sbjct: 61 AFDSVSKGRFWAAVPSVGLGIRKIHSGLPSMIADRLSDIVIADLDGIELKNQAETDLWDE 120 Query: 117 ISEDNDFPELLAGAVTEALFVGDGAFKITVDPELSEYPLIEFYSGDQVEYKRTRGRLQEV 176 IS+DN +LL A+TE L GDGAFKIT+D ++S+YPLIEFYSG++V+Y RGRLQEV Sbjct: 121 ISKDNKANKLLGEAITETLVEGDGAFKITIDTDVSQYPLIEFYSGERVDYTYMRGRLQEV 180 Query: 177 IFWTDYTVSSKDYRLEETFGLGYIRSRLLDAYGKEVPLSVVPETAQLKPEITYDGDFIMA 236 IF+TDY V K+YRL ET+G GYIR +L D+YGKEV L++VPETA LK +ITY GDFIMA Sbjct: 181 IFYTDYVVREKEYRLAETYGKGYIRYKLFDSYGKEVALTMVPETAALK-DITYTGDFIMA 239 Query: 237 VPLMVFKSTKWPGRGKSLFDT-KSDNFDALDEVVSQWMDAIRSGRVQKYIPEDMIPKNPE 295 VPLM FKS KW GRGKSLFD KSD+FDALDEV+SQW+DAIRSGRVQKYIPED+IPKNP Sbjct: 240 VPLMFFKSPKWQGRGKSLFDGGKSDDFDALDEVISQWIDAIRSGRVQKYIPEDLIPKNPN 299 Query: 296 TGELMRPNPFDNQFIRINSTFAEEAKGQINLVQPQILYEAFVASYASAVDMCLQGIISPS 355 TGEL++PN FDNQFI+I S+ AE+AK QI+ VQPQI++EAFVASYAS +D+CLQGIISPS Sbjct: 300 TGELLKPNAFDNQFIKIGSSLAEDAKTQISTVQPQIMFEAFVASYASILDVCLQGIISPS 359 Query: 356 TLGIDLKKTDNAEAQREKEKATLYTRGKIVERLNEVIPQLVQTVLKVYDTMQSRAAGKYE 415 TLGIDLKKTDNAEAQREKEKATLYTRGKI++ LNEVIPQLV VLKVYD MQ AG+YE Sbjct: 360 TLGIDLKKTDNAEAQREKEKATLYTRGKIIDALNEVIPQLVAIVLKVYDLMQEHTAGEYE 419 Query: 416 ASVTFGEYASPSFDAVVETVGKARTFGVMSIERAVEEMYGDTWTAEEKAEEVARLKAEQA 475 ASV FGEYASPSFD VVETVGKA+++G+MS+ER VEE+YGDTWT E+KA+EVARLK+EQA Sbjct: 420 ASVAFGEYASPSFDTVVETVGKAKSYGIMSLERCVEELYGDTWTDEDKAKEVARLKSEQA 479 Query: 476 PPTFDEP 482 P FDEP Sbjct: 480 -PAFDEP 485 >B1RBB6.1 B1RBB6_CLOPE Putative phage minor capsid protein Length = 506 Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 290/492 (58%), Positives = 379/492 (77%), Gaps = 7/492 (1%) Query: 1 VGWFKNMV----MKMLRINPAPESQIITIQEPYSYKANVLRNRLWYRGDPSELDQFYKQS 56 +GWFK+M+ +K L + PA + ITIQE Y+++ NV+RN+LWYRG+P ELDQF+K Sbjct: 1 MGWFKSMLTKAAIKYLNVQPAL-TNPITIQEAYTFETNVIRNKLWYRGEPYELDQFFKNI 59 Query: 57 VTDSVGKSRFWAAVPTAGLGIRKIHSGLPAMVADRLSDIVVADMDAITLKVQAETATWEK 116 +D V K+RFW+AVP+ L IRKIHSGLPAM+AD+LSDIVVAD+D+I + +A+ WE+ Sbjct: 60 SSDPVNKARFWSAVPSEDLSIRKIHSGLPAMIADKLSDIVVADLDSIEVTGEADNTLWEE 119 Query: 117 ISEDNDFPELLAGAVTEALFVGDGAFKITVDPELSEYPLIEFYSGDQVEYKRTRGRLQEV 176 I +DN F ++L + L GDGAFK+++D E+S+YP+IEF+ GD+VEY RGRL+E+ Sbjct: 120 IRKDNKFDDMLGDIIANTLVSGDGAFKLSIDTEISKYPIIEFFDGDKVEYITQRGRLKEI 179 Query: 177 IFWTDYTVSSKDYRLEETFGLGYIRSRLLDAYGKEVPLSVVPETAQLKPEITYDGDFIMA 236 F+T YT +++ Y+L ET+G GYI L D+ G EV L+ + ET +L ++TY DFIM Sbjct: 180 KFYTFYTKNNRQYKLSETYGKGYINYNLYDSNGNEVSLNTLDETREL-ADVTYKDDFIMG 238 Query: 237 VPLMVFKSTKWPGRGKSLFDTKSDNFDALDEVVSQWMDAIRSGRVQKYIPEDMIPKNPET 296 VPLM FKS K+ GRGKS+FD KSD FDALDEV+SQW+DAIR GRVQKYIPED++PK+ Sbjct: 239 VPLMFFKSPKFEGRGKSIFDNKSDAFDALDEVISQWIDAIRDGRVQKYIPEDLVPKDI-N 297 Query: 297 GELMRPNPFDNQFIRINSTFAEEAKGQINLVQPQILYEAFVASYASAVDMCLQGIISPST 356 G LM+PNPFDN+F+++ S+ AE+AK +I++ Q I YEA+V SY++A+DMCLQGIISPST Sbjct: 298 GNLMKPNPFDNRFLKVGSSLAEDAKNEIDMKQANINYEAYVESYSNAIDMCLQGIISPST 357 Query: 357 LGIDLKKTDNAEAQREKEKATLYTRGKIVERLNEVIPQLVQTVLKVYDTMQSRAAGKYEA 416 LGIDLKKTDNAEAQREKEK TLYTRGK+V+ L EVIP+LV +LK D + + G+YE Sbjct: 358 LGIDLKKTDNAEAQREKEKTTLYTRGKMVDILTEVIPELVNIILKTNDVLNKKNTGEYEV 417 Query: 417 SVTFGEYASPSFDAVVETVGKARTFGVMSIERAVEEMYGDTWTAEEKAEEVARLKAEQAP 476 S+ FGEYASPSFD VVETVGKA+T+GVMSIE+ +EEMYGDTWT EEK EE+ R+K + Sbjct: 418 SIVFGEYASPSFDTVVETVGKAKTYGVMSIEQCIEEMYGDTWTDEEKEEEIQRIKEQNGY 477 Query: 477 PTFDEPGANRDA 488 +EP D+ Sbjct: 478 LVAEEPKTVDDS 489 >Q0TSJ2.1 Q0TSJ2_CLOP1 Putative phage minor capsid protein Length = 500 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 275/451 (60%), Positives = 354/451 (78%), Gaps = 3/451 (0%) Query: 9 MKMLRINPAPESQIITIQEPYSYKANVLRNRLWYRGDPSELDQFYKQSVTDSVGKSRFWA 68 +K L + PA + I TIQE Y+Y+ NV+RN+LWYRG+P ELDQF+K +D V K+RFW+ Sbjct: 7 IKYLNVQPALINPI-TIQEAYTYETNVIRNKLWYRGEPYELDQFFKNISSDPVNKARFWS 65 Query: 69 AVPTAGLGIRKIHSGLPAMVADRLSDIVVADMDAITLKVQAETATWEKISEDNDFPELLA 128 AVP+ L IRKIHSGLPAM+AD+LSDIVVAD+D+I + + WE+I +DN F ++L Sbjct: 66 AVPSEDLSIRKIHSGLPAMIADKLSDIVVADLDSIEVTGENYNTLWEEIRKDNKFDDMLG 125 Query: 129 GAVTEALFVGDGAFKITVDPELSEYPLIEFYSGDQVEYKRTRGRLQEVIFWTDYTVSSKD 188 + L GDGAFK+++D E+S+YP+IEF+ GD+VEY RGRL+E+ F+T YT +++ Sbjct: 126 DIIATTLVSGDGAFKLSIDTEISKYPIIEFFDGDKVEYITQRGRLKEIKFYTFYTKNNRQ 185 Query: 189 YRLEETFGLGYIRSRLLDAYGKEVPLSVVPETAQLKPEITYDGDFIMAVPLMVFKSTKWP 248 Y+L ET+G GYI L D+ G EV L+ + ET +L ++TY DFIM VPLM FKS K+ Sbjct: 186 YKLSETYGKGYINYNLYDSNGNEVSLNTLDETREL-ADVTYKDDFIMGVPLMFFKSPKFE 244 Query: 249 GRGKSLFDTKSDNFDALDEVVSQWMDAIRSGRVQKYIPEDMIPKNPETGELMRPNPFDNQ 308 GRGKS+FD KSD FDALDEV+SQW+DAIR GRVQKYIPED++PK+ G LM+PNPFDN+ Sbjct: 245 GRGKSIFDNKSDAFDALDEVISQWIDAIRDGRVQKYIPEDLVPKDI-NGNLMKPNPFDNR 303 Query: 309 FIRINSTFAEEAKGQINLVQPQILYEAFVASYASAVDMCLQGIISPSTLGIDLKKTDNAE 368 F+++ S+ AE+AK +I++ Q I YEA+V SY++A+DMCLQGIISPSTLGIDLKKTDNAE Sbjct: 304 FLKVGSSLAEDAKNEIDMKQANINYEAYVESYSNAIDMCLQGIISPSTLGIDLKKTDNAE 363 Query: 369 AQREKEKATLYTRGKIVERLNEVIPQLVQTVLKVYDTMQSRAAGKYEASVTFGEYASPSF 428 AQREKEK TLYTRGK+V+ L EVIP+LV +LK D + + G+YE S+ FGEYASPSF Sbjct: 364 AQREKEKTTLYTRGKMVDILTEVIPELVNIILKTNDVLNKKNTGEYEVSIVFGEYASPSF 423 Query: 429 DAVVETVGKARTFGVMSIERAVEEMYGDTWT 459 D VVETVGKA+T+GVMSIE+ +EEMYGDTWT Sbjct: 424 DTVVETVGKAKTYGVMSIEQCIEEMYGDTWT 454 >C2KWH3.1 C2KWH3_9FIRM Phage minor capsid protein Length = 507 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/492 (44%), Positives = 314/492 (63%), Gaps = 24/492 (4%) Query: 1 VGWFKNMVMKM-------LRINPAPESQIITIQEPYSYKANVLRNRLWYRGDPSELDQFY 53 +GW K+M K L+I P + +IQ ++ +RN++WYR D +EL+Q Y Sbjct: 1 MGWIKSMTDKFKKGLQNWLQIQPVSPYHV-SIQSFMDFETAAIRNKIWYRADGNELEQLY 59 Query: 54 KQS--VTDSVGKSRFWAAVPTAGLGIRKIHSGLPAMVADRLSDIVVADMDAITLKVQAET 111 +Q + D+ +FW A PTAG+ IRKIH+GLP ++ LS IV+ DM+A + Sbjct: 60 QQCRMLNDA---QKFWGAKPTAGMEIRKIHTGLPGLIVKMLSAIVLPDMNAFEFDSDIQK 116 Query: 112 ATWEKISEDNDFPELLAGAVTEALFVGDGAFKITVDPELSEYPLIEFYSGDQVEYKRTRG 171 WE I E+N F L+ + +AL VGDGAF+I +DP S +P+IE+ G++VE+ G Sbjct: 117 NLWEDIEEENHFEALMDTCLKDALVVGDGAFRIVLDPAESAHPIIEWVPGERVEFVYRYG 176 Query: 172 RLQEVIFWTDYTVSSKDYRLEETFGLGYIRSRLLDAYGKEVPLSVVPETAQLKPEITYDG 231 RL+EVIF + K L +G GYIR +L +E PL P+ Q + T+D Sbjct: 177 RLKEVIFKIPW---DKGDVLHAHYGRGYIRHKLY-RNEQEYPL---PKDVQ---DWTFDE 226 Query: 232 DFIMAVPLMVFKSTKWPGRGKSLFDTKSDNFDALDEVVSQWMDAIRSGRVQKYIPEDMIP 291 +MAVP ++++ K+ GRG S+FD K D+FDALDE SQWMDA+R+GR + Y+PE IP Sbjct: 227 SLMMAVPFKIYENAKYEGRGSSIFDGKLDSFDALDEAWSQWMDALRAGRSKTYVPESFIP 286 Query: 292 KNPETGELMRPNPFDNQFIRINSTFAEEAKGQINLVQPQILYEAFVASYASAVDMCLQGI 351 ++P +G L++PN FDN+FI + +E AK I + QP I +++++ASY +A+D+CLQGI Sbjct: 287 RDPNSGMLLKPNAFDNRFIAGSDDISEGAKNAITVTQPNIPHDSYMASYITALDLCLQGI 346 Query: 352 ISPSTLGIDLKKTDNAEAQREKEKATLYTRGKIVERLNEVIPQLVQTVLKVYDTMQSRAA 411 ISPSTLGID KK DNA AQREKEK TLYTR IV+ + E IP+L+Q + ++ + Sbjct: 347 ISPSTLGIDTKKLDNALAQREKEKTTLYTRASIVKAIQEQIPRLIQQCINAEKVLRGESI 406 Query: 412 GKYEASVTFGEYASPSFDAVVETVGKAR-TFGVMSIERAVEEMYGDTWTAEEKAEEVARL 470 + + ++ FGEYASPSF++ VET+ KAR +MSIE +EE+YGDT + K EEVARL Sbjct: 407 EEVKVNIPFGEYASPSFESQVETLAKARPGVAMMSIEAQIEELYGDTKDDDWKKEEVARL 466 Query: 471 KAEQAPPTFDEP 482 K EQ + +EP Sbjct: 467 KEEQGISSVEEP 478 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,923,944,107 Number of extensions: 122154254 Number of successful extensions: 307304 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 307289 Number of HSP's successfully gapped: 10 Length of query: 502 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 362 Effective length of database: 1,741,754,103 Effective search space: 630514985286 Effective search space used: 630514985286 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)