BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0007.p
         (200 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D693.1 B1D693_9BACL Putative uncharacterized protein                144   5e-33

>B1D693.1 B1D693_9BACL Putative uncharacterized protein
          Length = 207

 Score =  144 bits (363), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 2/199 (1%)

Query: 3   EQQVIDQLSSYRAKLARIQALGTYSIGSGIQISRLSEEDXXXXXXXXXXGLPSYMYLGKR 62
           E+QVI QL+ Y+   ARIQ L  Y IG+G+ + RL ++D          G+PSY YL K 
Sbjct: 8   EKQVIHQLNRYKQIQARIQVLDHYPIGAGLTMRRLHQDDKLQALHQSLRGMPSYKYLSKH 67

Query: 63  DQELEATAHAYLTFYPAGVRAQRNAISDIGAYQEDDELLQELRAKIAKVIDARA--GSKY 120
           +Q+LE  A+AYL+    G+++Q   I      +ED+ LL ELR KI KVI AR    ++ 
Sbjct: 68  EQKLERAANAYLSKQRTGLKSQLAEIPKEAENEEDEMLLAELRGKIKKVIAARGYDVTRN 127

Query: 121 DLDEVLDRLSELQDLQAEIKRIDDLLSLLEGYKPDYSRILYQDVISGRNWSEVAKEMALS 180
           D D VLDR++ELQ LQ E+ +ID +L  LE YKP+ S++L    + G +  E    + + 
Sbjct: 128 DFDAVLDRITELQYLQEELGQIDTILMALECYKPNLSKLLRLRYVEGESVEETICLLGIV 187

Query: 181 KSVYFRWKKHAISAFIKLA 199
           +  Y RW+K AI  +I L+
Sbjct: 188 ERTYKRWRKQAIEQYIILS 206


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 991,895,468
Number of extensions: 35647164
Number of successful extensions: 133734
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 133734
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 71
Effective length of database: 1,845,385,268
Effective search space: 131022354028
Effective search space used: 131022354028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)