BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0003.p
         (139 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q5YA86.1 Q5YA86_9CAUD Rus                                             184   3e-45
B8I135.1 B8I135_CLOCE Endodeoxyribonuclease RusA                      179   7e-44
Q3D3P1.1 Q3D3P1_STRAG Endodeoxyribonuclease RusA superfamily          160   3e-38
B0MKW2.1 B0MKW2_9FIRM Putative uncharacterized protein                158   2e-37
Q1CPT6.1 Q1CPT6_STRPB Phage protein                                   158   2e-37

>Q5YA86.1 Q5YA86_9CAUD Rus
          Length = 131

 Score =  184 bits (466), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 108/133 (81%), Gaps = 4/133 (3%)

Query: 8   TEFFMPMKP-PTATHQEKQVAVVDGKPVFYEPDDLKAARAKLTAHLGKHVPQKKYSGVAL 66
           TEFFMPMK  PT THQ+KQV V++GKPVFYEP+DLKAARAKLTAHLGK+VP+KKY+   +
Sbjct: 2   TEFFMPMKKVPTTTHQQKQVTVINGKPVFYEPEDLKAARAKLTAHLGKYVPEKKYNN-PI 60

Query: 67  RVTVKWLFPIPEGSKHYDGEWKKTKPDTHNLNKLPFDIMTNLGFWKDDALVASEIIEKFW 126
           RV VKW FPI    KH +G++K TKPD  N  KL FD MT LGFWKDDAL+ S I EKFW
Sbjct: 61  RVFVKWCFPI--TGKHTNGKYKHTKPDIDNSQKLLFDCMTELGFWKDDALIVSLIAEKFW 118

Query: 127 AKLPGIYIKIEEL 139
           A+LPGIYIKIEE+
Sbjct: 119 AELPGIYIKIEEV 131


>B8I135.1 B8I135_CLOCE Endodeoxyribonuclease RusA
          Length = 136

 Score =  179 bits (454), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 108/133 (81%), Gaps = 4/133 (3%)

Query: 8   TEFFMPMKP-PTATHQEKQVAVVDGKPVFYEPDDLKAARAKLTAHLGKHVPQKKYSGVAL 66
           TEFF+PMK  PT THQEKQV VV+GKPVFYEPD LKAARAKL AHL K+VP K Y+G  +
Sbjct: 6   TEFFLPMKKVPTVTHQEKQVKVVNGKPVFYEPDKLKAARAKLQAHLAKYVPDKPYTG-PV 64

Query: 67  RVTVKWLFPIPEGSKHYDGEWKKTKPDTHNLNKLPFDIMTNLGFWKDDALVASEIIEKFW 126
           R+ VKW FP+    KH +GE+K +KPDT NL KL  D+MT+L FWKDDALVASEI+EKFW
Sbjct: 65  RLMVKWCFPV--TGKHKNGEYKTSKPDTDNLQKLLKDVMTDLRFWKDDALVASEIVEKFW 122

Query: 127 AKLPGIYIKIEEL 139
           A++PGI+I IEEL
Sbjct: 123 AEVPGIFIAIEEL 135


>Q3D3P1.1 Q3D3P1_STRAG Endodeoxyribonuclease RusA superfamily
          Length = 135

 Score =  160 bits (406), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/135 (61%), Positives = 99/135 (73%), Gaps = 4/135 (2%)

Query: 6   MPTEFFMPMKP-PTATHQEKQVAVVDGKPVFYEPDDLKAARAKLTAHLGKHVPQKKYSGV 64
           M  EFF+PMK  PT THQ+K+V VV+GKP FYEPD LK ARA       +HVP++K +G 
Sbjct: 4   MTIEFFIPMKKIPTTTHQQKKVRVVNGKPQFYEPDSLKEARAMFMDKFAQHVPKEKLNG- 62

Query: 65  ALRVTVKWLFPIPEGSKHYDGEWKKTKPDTHNLNKLPFDIMTNLGFWKDDALVASEIIEK 124
            +R+T KWLFP  +  K  +G++K TKPDT NLNKLP D MT LGFW DDA VASEIIEK
Sbjct: 63  PIRLTTKWLFP--KIKKSVNGQYKDTKPDTDNLNKLPKDCMTELGFWNDDAQVASEIIEK 120

Query: 125 FWAKLPGIYIKIEEL 139
           FWA   GIY+K+EEL
Sbjct: 121 FWADTVGIYVKVEEL 135


>B0MKW2.1 B0MKW2_9FIRM Putative uncharacterized protein
          Length = 132

 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 97/134 (72%), Gaps = 4/134 (2%)

Query: 6   MPTEFFMPMKPPTATHQEKQVAVVDGKPVFYEPDDLKAARAKLTAHLGKHVPQKKYSGVA 65
           M TEFFMPM PPT T QE +V V  GKP+FY+P ++++A+AKLTA+L +H P K Y    
Sbjct: 2   MKTEFFMPMIPPTVTAQEHKVTVSHGKPIFYDPPEVRSAKAKLTAYLSQHKPDKPYKK-G 60

Query: 66  LRVTVKWLFPIPEGSKHYDGEWKKTKPDTHNLNKLPFDIMTNLGFWKDDALVASEIIEKF 125
           +R+T KWLFP     +H DGE++ TKPDT NL K+  D MT  GFW DDALVASEI EKF
Sbjct: 61  VRLTTKWLFP---KEQHKDGEYRITKPDTDNLQKMLKDCMTVCGFWTDDALVASEICEKF 117

Query: 126 WAKLPGIYIKIEEL 139
           WA  PGIYIK+E L
Sbjct: 118 WAANPGIYIKVEVL 131


>Q1CPT6.1 Q1CPT6_STRPB Phage protein
          Length = 137

 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 102/140 (72%), Gaps = 4/140 (2%)

Query: 1   MEGDDMPTEFFMPM-KPPTATHQEKQVAVVDGKPVFYEPDDLKAARAKLTAHLGKHVPQK 59
           M+G  +  EFF+PM K PT THQ+K+V V++GKP FYEP+ LK AR K T+ L +HVP  
Sbjct: 1   MKGFILMIEFFLPMDKIPTTTHQQKKVTVINGKPHFYEPESLKNARDKFTSLLAQHVPPS 60

Query: 60  KYSGVALRVTVKWLFPIPEGSKHYDGEWKKTKPDTHNLNKLPFDIMTNLGFWKDDALVAS 119
           K  G  +R+TVKWLFP  +GS   +G++K TKPDT NL KL  D MT LGFW DDA VAS
Sbjct: 61  KLDG-PIRLTVKWLFPKIKGST--NGQYKTTKPDTDNLQKLLKDCMTELGFWNDDAQVAS 117

Query: 120 EIIEKFWAKLPGIYIKIEEL 139
           EIIEKFWA   GIY+K+EEL
Sbjct: 118 EIIEKFWADTVGIYVKVEEL 137


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 957,240,257
Number of extensions: 38888880
Number of successful extensions: 75057
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 75060
Number of HSP's successfully gapped: 9
Length of query: 139
Length of database: 3,060,696,203
Length adjustment: 103
Effective length of query: 36
Effective length of database: 2,090,331,658
Effective search space: 75251939688
Effective search space used: 75251939688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)