BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0001.p (355 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q0TSJ1.1 Q0TSJ1_CLOP1 Putative phage minor capsid protein 351 8e-95 B1RBB5.1 B1RBB5_CLOPE Putative phage minor capsid protein 348 3e-94 B8I128.1 B8I128_CLOCE Putative uncharacterized protein 319 3e-85 B8I908.1 B8I908_CLOCE Putative uncharacterized protein 318 6e-85 C2KWH1.1 C2KWH1_9FIRM Putative uncharacterized protein 236 2e-60 >Q0TSJ1.1 Q0TSJ1_CLOP1 Putative phage minor capsid protein Length = 545 Score = 351 bits (900), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 165/359 (45%), Positives = 240/359 (66%), Gaps = 18/359 (5%) Query: 2 RKYDIRGIYAQMEIDLIASMKRNLTRHENEEKKLGFKWPQWQQKKLEDLQQYKKEAAQIV 61 + YDIR I+ QME+DLI+SM R H+ E+ K GF+W QWQ+ KL ++++Y+K ++V Sbjct: 33 KSYDIRNIFEQMELDLISSMHRAFYFHQAEQSKEGFQWEQWQRTKLREIEKYRKRNKKLV 92 Query: 62 KKAEPVIEQAVEQEIKGGFFAGIKRTAMKLLGKF-MPLPRKLNIPDVS------------ 108 ++ I++A+ +EI+G F G + A KL+ + + P + P Sbjct: 93 EEYNKPIQEAINREIQGDFTKG-QENAEKLIDEVKIKFPENIKEPQTVREYIAKELGKKT 151 Query: 109 ----DENFFKLNEGRVNALVEATQGELKAARFAILRQSDDVFRQTIFKSQVYLNSGAASL 164 +ENFF +NE ++NAL E +LK A+ ++LR+ DDV+RQ IFK+ VYL SG ++ Sbjct: 152 NPQVEENFFGINEKKLNALQETVTNDLKKAQMSVLRKMDDVYRQIIFKTHVYLQSGTKTI 211 Query: 165 GQAIDMATRDFLDKGLDYITYSNGRRVNVASYAEMALRASSQRAVFAGEGAKRQQMGNPF 224 QAIDMAT+DFL+KG++ ITY NG++VN+ SYAEM LR +SQRA F GEG KR + G Sbjct: 212 NQAIDMATKDFLEKGINSITYKNGKQVNITSYAEMCLRTASQRATFLGEGKKRDEYGIHL 271 Query: 225 VVVSAHNNCSELCLPWQGKVYIDDVYSGGKASDGPYPLLSKAMAAGLFHPHCRHNMTTFV 284 VVV+AH N ++C PWQGKV IDD++S G DG YPLLS+A+ G HP+CRH + T+ Sbjct: 272 VVVTAHANTCKMCEPWQGKVLIDDIFSHGTKEDGDYPLLSEAVGKGFLHPNCRHTLATYF 331 Query: 285 PGVSRMPEPVDNTEALANYKAEQRQRYMERQIRRYKRREAGSVDPDNQAAAAVKVKEWQ 343 PGV+R+P + +A+ Y+ EQ+QRY ERQ+R++KR +AG+ D +N+ A+ KVKE + Sbjct: 332 PGVTRLPVVPNGEDAIKLYEVEQKQRYYERQLRKWKRFKAGTCDEENKEIASKKVKELE 390 >B1RBB5.1 B1RBB5_CLOPE Putative phage minor capsid protein Length = 394 Score = 348 bits (894), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 162/358 (45%), Positives = 236/358 (65%), Gaps = 16/358 (4%) Query: 2 RKYDIRGIYAQMEIDLIASMKRNLTRHENEEKKLGFKWPQWQQKKLEDLQQYKKEAAQIV 61 + YDIR I+ QME+DLI+SM R H+ E+ K GF+W QWQ+ KL +++Y+K ++V Sbjct: 33 KSYDIRNIFEQMELDLISSMHRAFYFHQAEQSKEGFQWEQWQRTKLRKIEKYRKRNKKLV 92 Query: 62 KKAEPVIEQAVEQEIKGGFFAGIKRTAMKLLGKFMPLPRKLNIPDVS------------- 108 ++ I++A+ +EI+G F G + T + + P + P Sbjct: 93 EEYNKPIQEAISREIQGNFTKGQENTEKLIDEVKIKFPEDIKEPQTVREYIAKELGKKAT 152 Query: 109 ---DENFFKLNEGRVNALVEATQGELKAARFAILRQSDDVFRQTIFKSQVYLNSGAASLG 165 +ENFF +NE ++NAL E +LK A+ ++LR+ DDV+RQTIFK+ VYL SG ++ Sbjct: 153 PQVEENFFGVNEKKLNALQETVTNDLKKAQMSVLRKMDDVYRQTIFKTHVYLQSGTKTIN 212 Query: 166 QAIDMATRDFLDKGLDYITYSNGRRVNVASYAEMALRASSQRAVFAGEGAKRQQMGNPFV 225 QAIDMAT+DFL+KG++ ITY +G+++N+ASYAEM LR +SQRA F GEG KR + G V Sbjct: 213 QAIDMATKDFLEKGINSITYKDGKQINIASYAEMCLRTASQRATFLGEGKKRDEYGIHLV 272 Query: 226 VVSAHNNCSELCLPWQGKVYIDDVYSGGKASDGPYPLLSKAMAAGLFHPHCRHNMTTFVP 285 VV+AH N ++C PWQGKV IDD++S G DG YPLLS+A+ G HP+CRH + T+ P Sbjct: 273 VVTAHANTCKMCEPWQGKVLIDDIFSHGTKEDGDYPLLSEAVGKGFLHPNCRHTLATYFP 332 Query: 286 GVSRMPEPVDNTEALANYKAEQRQRYMERQIRRYKRREAGSVDPDNQAAAAVKVKEWQ 343 G++R+P D EA+ Y+ EQ+QRY ERQ+R++KR EAG D +++ + K+KE + Sbjct: 333 GITRLPVVPDGKEAIKVYEKEQKQRYYERQLRKWKRFEAGICDEESKEITSNKIKELE 390 >B8I128.1 B8I128_CLOCE Putative uncharacterized protein Length = 643 Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 163/375 (43%), Positives = 236/375 (62%), Gaps = 34/375 (9%) Query: 3 KYDIRGIYAQMEIDLIASMKRNLTRHENEEKKLGFKWPQWQQKKLEDLQQYKKEAAQIVK 62 KYDIR I+ M +DLI S KR RH+ E+ K GF+W QWQ KL +L +Y++ +I+ Sbjct: 5 KYDIRKIFDDMALDLIRSQKRTFLRHQGEQLKEGFQWEQWQLGKLRELNKYRQTNKKIIG 64 Query: 63 KAEPVIEQAVEQEIKGGFFAG---IKRTAMKL----------------LGKFMP------ 97 I +++ +K F G +++T ++ L K+ P Sbjct: 65 GYSDEIMSLIDETLKSSFRKGENNVEKTISEIKNFVIDTPDSGIDTDNLKKYTPDEIAAL 124 Query: 98 ------LPRKLNIPDVS-DENFFKLNEGRVNALVEATQGELKAARFAILRQSDDVFRQTI 150 + +P + + FF +N ++ AL +A + ++ A+ A+LR+ DDV+RQTI Sbjct: 125 REAETIIEEAAKLPKATGTDTFFSVNRKKLKALQKAVKKDMGKAQNAVLRKMDDVYRQTI 184 Query: 151 FKSQVYLNSGAASLGQAIDMATRDFLDKGLDYITYSNGRRVNVASYAEMALRASSQRAVF 210 +K+QVY+ SGA +L QAIDMAT+DFL++G++ I Y +G+ VNVAS+AEMALR +S RA Sbjct: 185 YKAQVYMGSGATTLDQAIDMATKDFLEQGINCIQYKDGKMVNVASWAEMALRTASHRATM 244 Query: 211 AGEGAKRQQMGNPFVVVSAHNNCSELCLPWQGKVYIDDVYSGGKASDGPYPLLSKAMAAG 270 GEG+K + VV++AH N ELCLPWQGK+ IDDVYS GK DG + LLS A+ G Sbjct: 245 LGEGSKMDEWDMHLVVITAHGNTCELCLPWQGKILIDDVYSSGKP-DGVHTLLSTAIDEG 303 Query: 271 LFHPHCRHNMTTFVPGVSRMPE-PVDNTEALANYKAEQRQRYMERQIRRYKRREAGSVDP 329 LFHP+CRH+ + G++ +P+ PV++ +A+ Y+AEQ+QR +ER+IR+YKR E GSVDP Sbjct: 304 LFHPNCRHSRAIYFEGITELPKPPVNDEKAVERYQAEQKQRGIERKIRKYKRLEEGSVDP 363 Query: 330 DNQAAAAVKVKEWQG 344 NQA KV+EWQG Sbjct: 364 QNQAKYGAKVQEWQG 378 >B8I908.1 B8I908_CLOCE Putative uncharacterized protein Length = 643 Score = 318 bits (814), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 162/375 (43%), Positives = 236/375 (62%), Gaps = 34/375 (9%) Query: 3 KYDIRGIYAQMEIDLIASMKRNLTRHENEEKKLGFKWPQWQQKKLEDLQQYKKEAAQIVK 62 KYDIR I+ M +DLI S KR RH+ E+ K GF+W QWQ KL +L +Y++ +I+ Sbjct: 5 KYDIRKIFDDMALDLIRSQKRTFLRHQGEQLKEGFQWEQWQLGKLRELNKYRQTNKKIIG 64 Query: 63 KAEPVIEQAVEQEIKGGFFAG---IKRTAMKL----------------LGKFMP------ 97 I +++ +K F G +++T ++ L K+ P Sbjct: 65 GYSDEIMSLIDETLKSSFRKGENNVEKTISEIKNFVIDTPDSGIDTDNLKKYTPDEIAAL 124 Query: 98 ------LPRKLNIPDVS-DENFFKLNEGRVNALVEATQGELKAARFAILRQSDDVFRQTI 150 + +P + + FF +N ++ AL +A + ++ A+ A+LR+ DDV+RQTI Sbjct: 125 REAETIIEEAAKLPKATGTDTFFSVNRKKLKALQKAVKKDMGKAQNAVLRKMDDVYRQTI 184 Query: 151 FKSQVYLNSGAASLGQAIDMATRDFLDKGLDYITYSNGRRVNVASYAEMALRASSQRAVF 210 +K+QVY+ SGA +L QAIDMAT+DFL++G++ I Y +G+ VNVAS+AEMALR +S RA Sbjct: 185 YKAQVYMGSGATTLDQAIDMATKDFLEQGINCIQYKDGKMVNVASWAEMALRTASHRATM 244 Query: 211 AGEGAKRQQMGNPFVVVSAHNNCSELCLPWQGKVYIDDVYSGGKASDGPYPLLSKAMAAG 270 GEG+K + VV++AH N ELCLPWQGK+ IDDVYS GK DG + LLS A+ G Sbjct: 245 LGEGSKMDEWDMHLVVITAHGNTCELCLPWQGKILIDDVYSSGKP-DGVHTLLSTAIDEG 303 Query: 271 LFHPHCRHNMTTFVPGVSRMPE-PVDNTEALANYKAEQRQRYMERQIRRYKRREAGSVDP 329 LFHP+CRH+ + G++ +P+ PV++ +A+ Y++EQ+QR +ER+IR+YKR E GSVDP Sbjct: 304 LFHPNCRHSRAIYFEGITELPKPPVNDEKAVERYQSEQKQRGIERKIRKYKRLEEGSVDP 363 Query: 330 DNQAAAAVKVKEWQG 344 NQA KV+EWQG Sbjct: 364 QNQAKYGAKVQEWQG 378 >C2KWH1.1 C2KWH1_9FIRM Putative uncharacterized protein Length = 546 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 207/352 (58%), Gaps = 9/352 (2%) Query: 4 YDIRGIYAQMEIDLIASMKRNLTRHENEEKKLGFKWPQWQQKKLEDLQQYKKEAAQIVKK 63 YDI ++E +LIASM RN+ RH EE K +W WQ ++L+ L+ Y+++ + Sbjct: 3 YDIGEALDRIEEELIASMIRNMGRHRVEEIKEEKEWTMWQAEQLKSLRAYRQDNKEKYSG 62 Query: 64 AEPVIEQAVEQEIKGGFFAGIKRTAMKLL---GKFMPLPRKLNIPDVSDENFFKLNEGRV 120 I + +E+ I+ + AG K+L K L + +N P FF+LN+ ++ Sbjct: 63 RFLAINEKIEEAIRKSYAAGGMHEERKILRAAKKGAKLSQSMN-PLTG--RFFQLNKEKL 119 Query: 121 NALVEATQGELKAARFAILRQSDDVFRQTIFKSQVYLNSGAASLGQAIDMATRDFLDKGL 180 AL++AT+ ++ A AILR +DD +R+ IF +QVY NSGA + QA+DMAT+ L GL Sbjct: 120 EALIKATKADMTKAETAILRMADDQYRKAIFNAQVYANSGAGTYEQAVDMATKSMLSSGL 179 Query: 181 DYITYSNGRRVNVASYAEMALRASSQRAVFAGEGAKRQQMGNPFVVVSAHNNCSELCLPW 240 + + Y NG R + +YA MA+R +++RA +GEG KR++ G V+++ N C P+ Sbjct: 180 NCVEYKNGARHTLPNYARMAVRTANKRAYLSGEGEKRRKWGITTVILAKRGNPCPKCAPF 239 Query: 241 QGKVYIDDVYSGGKASDGPYPLLSKAMAAGLFHPHCRHNMTTFVPGVSRMPEPVDN---T 297 GKV+IDDV+SGG DG YPLLS A+ AGL+HP+C+ + TT+ P + E Sbjct: 240 VGKVFIDDVWSGGNKKDGDYPLLSSAIGAGLYHPNCKDSHTTYFPELHAGDEKWTKEELE 299 Query: 298 EALANYKAEQRQRYMERQIRRYKRREAGSVDPDNQAAAAVKVKEWQGHGLYR 349 E +Y EQ+++ +E Q+ +++R S+DP+N+ ++ + + H ++ Sbjct: 300 EVAEDYNREQKEKRIEHQVEKFERLSMFSLDPENKKQYDLRARLLKKHVFFK 351 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,020,504,311 Number of extensions: 81485705 Number of successful extensions: 234565 Number of sequences better than 1.0e-05: 53 Number of HSP's gapped: 234490 Number of HSP's successfully gapped: 53 Length of query: 355 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 218 Effective length of database: 1,770,017,148 Effective search space: 385863738264 Effective search space used: 385863738264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)