BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0007.p (472 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KBR1.1 Q9KBR1_BACHD BH1864 protein 412 e-113 A9GI46.1 A9GI46_SORC5 Multiple sugar transport system substrate-... 322 4e-86 B3KD55.1 B3KD55_9BACI Extracellular solute-binding protein family 1 231 1e-58 A4XJR4.1 A4XJR4_CALS8 Extracellular solute-binding protein, fami... 207 2e-51 B1D5T0.1 B1D5T0_9BACL Extracellular solute-binding protein family 1 207 2e-51 >Q9KBR1.1 Q9KBR1_BACHD BH1864 protein Length = 461 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/409 (47%), Positives = 275/409 (67%), Gaps = 6/409 (1%) Query: 68 NAEGQVTIQFAGWGDPSEKEVFTNLIQAFEKANPAIKVDYLHIPSGDYVGKMNTILAGGN 127 + EG V I + WG P E VF L+ FE NP IKV+ +HIP DY GKMNT+LAGG Sbjct: 38 DEEGNVHISISTWGLPDELAVFNELVDNFENDNPNIKVNVIHIPD-DYSGKMNTMLAGGT 96 Query: 128 APDVLYVPDGDFGRWVSQDLLLPIEDLLKNSSIDTADMWASGLERYRYDGSANGQGELYA 187 APDV++ DGDFG WV L L I+D+++ SSI+ DMW S L RYR+DG G+G+LYA Sbjct: 97 APDVVFTSDGDFGGWVKAGLFLNIQDMVEESSINLEDMWESALSRYRWDGRVLGEGDLYA 156 Query: 188 LPKDIGPHVLYYNKDIFTKMNVPFLSADTPMSMEQLLDTAKKLTVSK--NGKTTQYGMGP 245 LPKDIGP L+YNK++F + VP+ + PM+ ++LL+ AK LT+ + NG+ Q+G+GP Sbjct: 157 LPKDIGPSALFYNKELFDEAGVPYPDPEVPMTWDELLEKAKALTIDENGNGRPDQFGLGP 216 Query: 246 VWWEDFVLAHGGSFLSDNKQEFVGNSQETIDALQFAADLTNKHGVVPSSSALKDLNDSEM 305 +WWE F+ ++GG LS+++ FV N E ++ALQF ADLT+ H V P S +L+ ++ +M Sbjct: 217 IWWEGFIWSNGGDILSEDRTTFVMNEPEAVEALQFVADLTHVHKVAPDSRSLEAMDADQM 276 Query: 306 FKTGKLAMMVSGRWMVPEFRKLNFDWDVAPLXXXXXXXXXXXXXLAIYSKTKHV---EAA 362 F+TG++AMM +GRWMVP +RKL+FDWDVAP Y+ K E A Sbjct: 277 FETGRIAMMTAGRWMVPTYRKLDFDWDVAPPPAGATGVSSSWSGSVGYAINKDTNFPEEA 336 Query: 363 YKLVEYLGGPEGQREQSLMGFSIPSFKSMASTDVFLQPGQKPEHAEVFIQAVEKEVSGPW 422 ++L+EYL G GQ Q+ +GF+IP++KS++ TDVFLQPG+KPE+AE FI E + GPW Sbjct: 337 FQLIEYLAGERGQEIQTELGFAIPTYKSVSETDVFLQPGEKPENAEAFIIGAETQRPGPW 396 Query: 423 TALPNAKWYDLLAQGLAPMWEGKKSAADVLNDLKPKIDAAIKEGNSGLF 471 T PN +W D + Q L +W G++SA ++L+++ ++ ++EGN +F Sbjct: 397 TLTPNNRWLDHVNQNLTYLWNGERSAEEILDEIADEVQQLLEEGNPEIF 445 >A9GI46.1 A9GI46_SORC5 Multiple sugar transport system substrate-binding protein Length = 440 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 159/413 (38%), Positives = 244/413 (59%), Gaps = 8/413 (1%) Query: 64 GNIPNAEGQVTIQFAGWGDPSEKEVFTNLIQAFEKANPAIKVDYLHIPS--GDYVGKMNT 121 + P + TI F GWG P E+ + + + AFE+ +P I V+Y +P DY+ K+ Sbjct: 24 ADAPPQVARTTITFVGWGMPEERAIMRSALAAFERIHPEIHVEYTQVPGVGYDYLNKLRL 83 Query: 122 ILAGGNAPDVLYVPDGDFGRWVSQDLLLPIEDLLKNS-SIDTADMWASGLERYRYDGSAN 180 ++ APDV YVPDG FG VSQ +L I+ L++ S ++D AD+W + L+RYR++G Sbjct: 84 MIVAKRAPDVFYVPDGAFGEMVSQGVLRDIDGLVQESRTLDVADIWPTALDRYRWNGRVL 143 Query: 181 GQGELYALPKDIGPHVLYYNKDIFTKMNVPFLSADTPMSMEQLLDTAKKLTVSKNGKTTQ 240 +G LYALPKDIGP VLYYNKD + VP + PM+ +Q + + LT + G Sbjct: 144 HEGSLYALPKDIGPTVLYYNKDALRRRGVPAPDPEVPMTWDQAIAAFRALTY-REGYVQH 202 Query: 241 YGMGPVWWEDFVLAHGGSFLSDNKQEFVGNSQETIDALQFAADLTNKHGVVPSSSALKDL 300 +G+ +E V + GG + K+ ++ +S ++DA+Q+ ADL +H V P+ + Sbjct: 203 WGITGYPYESAVWSAGGEIVDAEKRRWLMDSDVSMDAVQWCADLALRHHVAPNLARSGGA 262 Query: 301 NDSEMFKTGKLAMMVSGRWMVPEFRKLNFDWDVAPLXX----XXXXXXXXXXXLAIYSKT 356 SE+F+ G +AM + GRWMVP +R++ FDWDVAP+ LA+ + + Sbjct: 263 GQSELFEAGLVAMHIDGRWMVPRYRRMRFDWDVAPVPVPKPGMTSVSWSGSVGLAVSAAS 322 Query: 357 KHVEAAYKLVEYLGGPEGQREQSLMGFSIPSFKSMASTDVFLQPGQKPEHAEVFIQAVEK 416 + + A+ LVEYL GPEGQRE + G +P+ +S+A+T FLQPGQ+P HA VF++A E Sbjct: 323 RRIAEAFTLVEYLAGPEGQRELARSGLQVPNQRSVAATAAFLQPGQRPAHAGVFLRAAET 382 Query: 417 EVSGPWTALPNAKWYDLLAQGLAPMWEGKKSAADVLNDLKPKIDAAIKEGNSG 469 P T LPNA W+++ + L +W G++ A ++L L P ++ ++E N G Sbjct: 383 SRPSPETELPNAFWHEVFSSFLPQVWRGERRARELLPALAPIVEQTMRENNPG 435 >B3KD55.1 B3KD55_9BACI Extracellular solute-binding protein family 1 Length = 461 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 143/421 (33%), Positives = 217/421 (51%), Gaps = 11/421 (2%) Query: 57 SKKEPEAGNIPNAEGQVTIQFAGWGDPSEKEVFTNLIQAFEKANPAIKVDYLHIPSGDYV 116 SK EA + + VTI+F G G+P+EK++F LI +FE+ P + V Y +P G+Y Sbjct: 41 SKPGQEASTGTDQKEPVTIEFMGHGNPNEKKIFEKLIASFEEKYPHVTVKYTSVPPGEYS 100 Query: 117 GKMNTILAGGNAPDVLYVPDGDFGRWVSQDLLLPIEDLLKNSSIDTAD-MWASGLERYRY 175 KM T+++ G PDV YV +F R+ LL I+ L +S+ D +W ++RYR+ Sbjct: 101 QKMTTLISSGKVPDVFYVGGPEFYRFAEAGTLLNIQSYLDQTSLFNPDNVWKQAMDRYRF 160 Query: 176 DGSANGQGELYALPKDIGPHVLYYNKDIFTKMNVPFLSADT-PMSMEQLLDTAKKLTVSK 234 DGS G G+LY LPKD+GP YNKD+F VP+ SA + + +L+ A+KLTV Sbjct: 161 DGSKVGAGDLYGLPKDVGPWAFVYNKDLFDDAGVPYPSATAGEWTWDDMLEAAQKLTVDN 220 Query: 235 N--GKTTQYGMGPVWWEDFVLAHGGSFLSDNKQEFVGNSQETIDALQFAADLTNKHGVVP 292 N GK QYG+G E V +GG ++ N +A+QF ADL K+ V P Sbjct: 221 NGDGKPEQYGVGAYSLESAVWGNGGEYIDYATGTVKVNEPAFYEAMQFVADLNLKYKVSP 280 Query: 293 SSSALKDLNDSEMFKTGKLAMMVSGRWMVPEFRKLNFDWDVAPLXXXXXXXXXXX----X 348 + A + +N F G+L M G W P F +L FDWD+A Sbjct: 281 NQEAEQAMNAYTRFINGQLGMFAMGPWDQPAFWELPFDWDIAAWPASPNTGQTATWLGSM 340 Query: 349 XLAIYSKTKHVEAAYKLVEYLGGPE-GQREQSLMGFSIPSFKSMASTDVFLQPGQKPEHA 407 A+ +K+KH + A+ L +L E GQRE +G ++P+ +MA + F + + P+ Sbjct: 341 GFAVSAKSKHPQEAFDLAAFLSLDEQGQRENYQLGQAVPNLINMAEGE-FKEMDKGPQTR 399 Query: 408 EVFIQAVEKEVSGPWTALP-NAKWYDLLAQGLAPMWEGKKSAADVLNDLKPKIDAAIKEG 466 +VF+ ++ A + +W D Q + +W G+ SA D ++PK+ +G Sbjct: 400 QVFLDIIQDYGRPNVIAFSKDTQWMDTFNQNASKVWNGEMSAKDFTAQIQPKMQELYDKG 459 Query: 467 N 467 N Sbjct: 460 N 460 >A4XJR4.1 A4XJR4_CALS8 Extracellular solute-binding protein, family 1 Length = 449 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/414 (31%), Positives = 207/414 (50%), Gaps = 14/414 (3%) Query: 68 NAEGQVTIQFAGWGDPSEKEVFTNLIQAFEKANPAIKVDYLHI-PSGDYVGKMNTILAGG 126 A ++ + + G+G P EKE++T L++ F + I VDY+ P +Y K+ ++A G Sbjct: 33 QASSKIKLTWMGFGQPQEKEIYTKLVKKFMERYKNITVDYICTAPGQEYGMKIQAVMASG 92 Query: 127 NAPDVLYVPDGDFGRWVSQDLLLPIEDLLKNSS-IDTADMWASGLERYRYDGSANGQGEL 185 PDV YVP + WV LL I +K S I+ ++W + RY YDG G+G++ Sbjct: 93 KLPDVFYVPPENLRAWVDAGKLLKITKYVKVSKEINLNNVWPQAISRYMYDGKTIGKGDI 152 Query: 186 YALPKDIGPHVLYYNKDIFTKMNVPFLSADTPMSMEQLLDTAKKLTVSKN--GKTTQYGM 243 YALPKD+GP YNK +F K +P P + + ++ KK+T N GK Q+G Sbjct: 153 YALPKDVGPFAFGYNKTMFKKEGIPLPDPKKPYTWNEFVEICKKVTKDTNGDGKLDQWGT 212 Query: 244 G-PVWW--EDFVLAHGGSFLSDNKQEFVGNSQETIDALQFAADLTNKHGVVPSSSALKDL 300 V W FV ++G +L K + + + I+ALQF ADL NK+ V P++ + + Sbjct: 213 DLDVNWTLHMFVWSNGADWLDSTKTKVTIDDPKFIEALQFFADLRNKYKVTPTAVQGQSI 272 Query: 301 NDSEMFKTGKLAMMVSGRWMVPEFRKLNFDWDVAPLXXXXXXXXXXX----XXLAIYSKT 356 + + + G+LA G W VP + KL F++D+ P L + + T Sbjct: 273 SGYQRWLNGQLAFFPVGPWDVPVYNKLKFEYDLIPPPVSPRTKKPATWLGSLGLGVAANT 332 Query: 357 KHVEAAYKLVEYLGG-PEGQREQSLMGFSIPSFKSMASTDVFLQPGQKPEHAEVFIQAVE 415 K+ + A L +L EGQR +G IP+ MA + +++ +KP + FI+ VE Sbjct: 333 KYPQQAVDLAAFLSTDREGQRMAYQLGLQIPNLIDMAKNE-YVRWKEKPNNKVEFIRIVE 391 Query: 416 KE-VSGPWTALPNAKWYDLLAQGLAPMWEGKKSAADVLNDLKPKIDAAIKEGNS 468 P+ + +WYD GL P+ +GK SA +KPKI + + N Sbjct: 392 DYGRRFPFEYTYDREWYDTFYSGLQPVLDGKMSAEQYCKQIKPKIQKLLDKANQ 445 >B1D5T0.1 B1D5T0_9BACL Extracellular solute-binding protein family 1 Length = 452 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 198/359 (55%), Gaps = 10/359 (2%) Query: 64 GNIPNAEGQVTIQFAGWGDPSEKEVFTNLIQAFEKANPAIKVDYLHIPSGDYVGKMNTIL 123 G A+ + +I+F GWG +EK VF LI A+ K P KV Y +P G+Y K++T++ Sbjct: 58 GTDAGADAKSSIEFMGWGGDTEKAVFQKLIDAYMKKYPNKKVKYTVVPPGEYYQKLDTLI 117 Query: 124 AGGNAPDVLYVPDGDFGRWVSQDLLLPIEDLLKNSS-IDTADMWASGLERYRYDGSANGQ 182 A PDV Y +F + VS +L+ ++ +L SS +D +++W + L+RYRYDG+A+G+ Sbjct: 118 AAKKTPDVFYAGGANFNKLVSSGVLMNLQKMLDTSSLVDQSNVWPAALDRYRYDGTASGK 177 Query: 183 GELYALPKDIGPHVLYYNKDIFTKMNVPFLSADT-PMSMEQLLDTAKKLT-VSKNGKTTQ 240 G++Y LPKD+GP YNKD+F K +P+ SA + + +L AKKLT V++ GK Sbjct: 178 GDIYGLPKDVGPWAFAYNKDLFDKAGLPYPSAKAGEYTWDDMLADAKKLTVVNERGKIDT 237 Query: 241 YGMGPVWWEDFVLAHGGSFLSDNKQEFVGNSQETIDALQFAADLTNKHGVVPSSSALKDL 300 +G+ E V A+GG + +D + ++ E A+QF ADL+ + V PS K Sbjct: 238 FGVAGYSTESAVWANGGDW-TDGNGKITIDTPEFAQAMQFVADLSLVNKVSPSPDDEKAQ 296 Query: 301 NDSEMFKTGKLAMMVSGRWMVPEFRKLNFDWDVA--PLXXXXXXXXXXXXXLA--IYSKT 356 N F GK+AM G W P F L F+WD+A P L + +KT Sbjct: 297 NGYARFVAGKIAMFPMGPWDQPGFWDLPFNWDIAAWPASPNTGKTATWLGSLGFVVSAKT 356 Query: 357 KHVEAAYKLVEYLG-GPEGQREQSLMGFSIPSFKSMASTDVFLQPGQKPEHAEVFIQAV 414 + + A++L YL + QR+ +G ++P+ MA + FL+ +KPE +VF+ + Sbjct: 357 EFPDDAFRLAAYLSLDQDSQRQNYQLGQAVPNLMDMAKGE-FLEMDKKPETRQVFLDII 414 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,753,846,081 Number of extensions: 112924987 Number of successful extensions: 188276 Number of sequences better than 1.0e-05: 1211 Number of HSP's gapped: 187613 Number of HSP's successfully gapped: 1215 Length of query: 472 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 333 Effective length of database: 1,751,175,118 Effective search space: 583141314294 Effective search space used: 583141314294 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)