BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0006.p (288 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KBR0.1 Q9KBR0_BACHD Sugar transport system (Permease) (Binding... 393 e-108 A9GI49.1 A9GI49_SORC5 Sugar ABC transporter, permease protein 297 9e-79 B3KD56.1 B3KD56_9BACI Binding-protein-dependent transport system... 296 1e-78 A4XJR5.1 A4XJR5_CALS8 Binding-protein-dependent transport system... 283 2e-74 B1D5S9.1 B1D5S9_9BACL Binding-protein-dependent transport system... 283 2e-74 >Q9KBR0.1 Q9KBR0_BACHD Sugar transport system (Permease) (Binding protein dependent transporter) Length = 309 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/290 (66%), Positives = 232/290 (80%), Gaps = 4/290 (1%) Query: 2 KRR---EYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKL-V 57 KRR EY W Y FIA PI+GF +FA P+ YS+YVSFTD+ Y PV+ G DNY +L V Sbjct: 20 KRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVWTGADNYYRLFV 79 Query: 58 QDELFWKTLRNTLYSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTL 117 D+LF KT+ NT Y+AL IPIGM SLG A ALNQK++GI FRT FFLP +SSV+A+TL Sbjct: 80 TDDLFRKTVFNTFYAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPAVSSVVAITL 139 Query: 118 LWKWIFNDTYGLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQG 177 LW+WIFN +GLLN +L GI GP WLS E+WAMPAMIIQGVW GLGIN++LYLAALQG Sbjct: 140 LWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGINMILYLAALQG 199 Query: 178 VPRSFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNY 237 V + YEAA+IDG N WQ+F HITVP ISPTT +ILIT+ IGALQD+ RF IMTEGGPNY Sbjct: 200 VNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRFMIMTEGGPNY 259 Query: 238 STTTIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHY 287 STTT+VYYLF NAFRYM MG+AS+MAW+LG+IIL +T++NF +++WVHY Sbjct: 260 STTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKLAKKWVHY 309 >A9GI49.1 A9GI49_SORC5 Sugar ABC transporter, permease protein Length = 296 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 143/288 (49%), Positives = 200/288 (69%), Gaps = 2/288 (0%) Query: 3 RREYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDELF 62 R E W +F+A P+LGF++FA P+ S+Y+SFT + P + G DNY +L + F Sbjct: 9 RAEARWGCAFVAVPVLGFVVFALGPMLASLYLSFTRFEVLTPPRWVGLDNYARLFARDFF 68 Query: 63 -WKTLRNTLYSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWKW 121 W+TL NT + L IPIG+ SL A LNQK++ FRT++F+P++ S++A LLWKW Sbjct: 69 VWRTLANTAFYLLGIPIGIAISLLLALLLNQKLRLEGLFRTVYFIPSVCSIVAAALLWKW 128 Query: 122 IFNDTYGLLNHLLELAGIQGP-AWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPR 180 I+N YGL+N L G+ P AWLSS + PA+++ G+WSGLG N+VL+LAALQGVPR Sbjct: 129 IYNADYGLINTYLRALGVADPPAWLSSPRLVKPALVVMGIWSGLGYNMVLFLAALQGVPR 188 Query: 181 SFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNYSTT 240 S EAAE+DGAN WQRFRH+T+P ISP T +I +T++IG LQ + + +MT GGP + + Sbjct: 189 SLLEAAELDGANAWQRFRHVTLPAISPMTFFIAVTSVIGGLQSFDQVYVMTRGGPEFRSA 248 Query: 241 TIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHYE 288 T + YL+ F+Y MG+AS+MAW+LG +++ VT+L F +RRWVH E Sbjct: 249 TFMLYLYLTGFQYFQMGYASAMAWVLGALVMIVTVLQFRLARRWVHDE 296 >B3KD56.1 B3KD56_9BACI Binding-protein-dependent transport systems inner membrane component Length = 297 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 137/289 (47%), Positives = 200/289 (69%), Gaps = 2/289 (0%) Query: 2 KRREYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDEL 61 +RRE W Y F+A P+LGFLLF +P+ +S+Y+SF + P + G NY L+ DE Sbjct: 9 RRRELAWLYLFVAPPVLGFLLFGLVPILFSIYISFHKWDMLSDPQWAGLANYKDLMGDEK 68 Query: 62 FWKTLRNTLYSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWKW 121 +K++ NT+Y + IPIGM+ S+ A +N+K GI F RT+++LP IS VIA++LLW+W Sbjct: 69 VYKSMYNTIYLMIGIPIGMVLSMLLAILMNRKFAGISFMRTIYYLPVISPVIAVSLLWQW 128 Query: 122 IFNDTYGLLNHLL-ELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPR 180 I N YGLLN+ L E GI GP WL +W P++I+ G+WSG+G N+VLYLA LQ + Sbjct: 129 ILNQDYGLLNNFLWETFGIAGPNWLGKPEWVKPSLILIGLWSGIGGNMVLYLAGLQSISS 188 Query: 181 SFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIM-TEGGPNYST 239 ++YEAAEIDGA W + IT+P ++P ++++ IIGA Q + + ++ +GGP YS Sbjct: 189 TYYEAAEIDGAGAWHKLTRITIPLLTPIHFFVVVMGIIGAFQSFSQIYVLAVDGGPEYSG 248 Query: 240 TTIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHYE 288 T+VYY+FQ+AF+Y NMG+AS++AW+LG++I VTL+ F S RWV+ + Sbjct: 249 ATVVYYIFQHAFQYFNMGYASAVAWVLGILIFVVTLIQFKLSNRWVYQD 297 >A4XJR5.1 A4XJR5_CALS8 Binding-protein-dependent transport systems inner membrane component Length = 295 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/286 (47%), Positives = 199/286 (69%), Gaps = 2/286 (0%) Query: 3 RREYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDELF 62 +E + Y FI API F +FA P+ YS Y SFTD+ G P F G DNY +++ D+ F Sbjct: 7 SKEKVVGYLFILAPIFQFFIFALGPMVYSFYASFTDWDGLTKPSFIGLDNYKEIILDDRF 66 Query: 63 WKTLRNTLYSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWKWI 122 WK L NT++ + IPIGM S+ A +NQK++GI +R ++++P ISS++A+ +LW+WI Sbjct: 67 WKALYNTVFYMVGIPIGMFLSIILAILMNQKLKGISIYRVVYYIPNISSLVAIAILWQWI 126 Query: 123 FNDTYGLLNHLL-ELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPRS 181 +N YG+LN++L +L IQGP WL + W PA+I+ +W GLG + +LYLA LQ +P Sbjct: 127 YNPDYGILNNMLYKLFHIQGPNWLYNTTWVKPAIIVVTIWRGLGYSTLLYLAGLQNIPHV 186 Query: 182 FYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIM-TEGGPNYSTT 240 +YEAAEIDGAN ++F +IT+P ++PT+ YI++T+ IG LQ + QI+ GGP YS Sbjct: 187 YYEAAEIDGANSLKKFIYITLPLLTPTSFYIVVTSCIGGLQMFVEPQILANNGGPEYSAA 246 Query: 241 TIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVH 286 T+V+YL+Q AF +MG+A ++AWILG+II VTL+ F ++ +WV+ Sbjct: 247 TVVFYLWQKAFINYDMGYACAVAWILGVIIFIVTLIQFKYANKWVY 292 >B1D5S9.1 B1D5S9_9BACL Binding-protein-dependent transport systems inner membrane component Length = 297 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 131/289 (45%), Positives = 195/289 (67%), Gaps = 2/289 (0%) Query: 2 KRREYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDEL 61 +R+E +W+ F+ P+LGFL+F PL S +SF + F G DN+ + DE Sbjct: 9 RRKEIIWSLIFVMPPVLGFLIFGLAPLLTSFGLSFMTWDMLTPSKFVGVDNFHYMFNDEK 68 Query: 62 FWKTLRNTLYSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWKW 121 F+K+L NT + L IP+GM+ S+ A +N+K+ GI FRT++++P IS +IA++LLW+W Sbjct: 69 FYKSLYNTFFLLLGIPLGMVISMILAIMMNRKLAGISIFRTIYYIPVISPIIAVSLLWQW 128 Query: 122 IFNDTYGLLNHLL-ELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPR 180 + N YGL+N + ++ G QGP WL W P+ II G+W G+G +VLYLA LQG+ Sbjct: 129 MLNYDYGLVNEFIWKVFGTQGPNWLGDPNWVKPSFIIMGLWGGVGGTMVLYLAGLQGISS 188 Query: 181 SFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIM-TEGGPNYST 239 ++YEAAE+DGA W +F+HIT+P +SP Y+++ IIG Q + + I+ +GGP YS Sbjct: 189 TYYEAAEVDGATRWHQFKHITLPLLSPIHFYVVVMGIIGTFQSFSQMYILAADGGPEYSG 248 Query: 240 TTIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHYE 288 TIVYY+FQ AF+Y NMG+ASS+AW+LG++I +TL+ F S+RWV+ + Sbjct: 249 ATIVYYIFQEAFKYFNMGYASSVAWVLGILIFIITLVQFRLSKRWVYQD 297 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,822,597,614 Number of extensions: 75859522 Number of successful extensions: 271898 Number of sequences better than 1.0e-05: 6020 Number of HSP's gapped: 262771 Number of HSP's successfully gapped: 6032 Length of query: 288 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 154 Effective length of database: 1,798,280,193 Effective search space: 276935149722 Effective search space used: 276935149722 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)