BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0004.p (317 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC33.1 B3KC33_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 493 e-137 B3KBZ4.1 B3KBZ4_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 471 e-131 B1D8D6.1 B1D8D6_9BACL Alpha-N-arabinofuranosidase EC=3.2.1.55 456 e-126 A9U6V4.1 A9U6V4_PHYPA Predicted protein (Fragment) 272 3e-71 B1D8I7.1 B1D8I7_9BACL Alpha-N-arabinofuranosidase EC=3.2.1.55 247 1e-63 >B3KC33.1 B3KC33_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 317 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 235/317 (74%), Positives = 259/317 (81%) Query: 1 MAGTETFRNPIVARAADPWVLRHTDGNYYFMHXXXXXXXXXXXXXXXXXAQGRKKTIWSP 60 M TF NPIV RAADPWV +HTDG YYFM A+GRKKTIW+P Sbjct: 1 MVNGPTFNNPIVDRAADPWVWKHTDGYYYFMSTKRDHLELTQSATLTGLAEGRKKTIWTP 60 Query: 61 EPNGRYSYNLWAPEIHHLNGKWYIYFTANDGGGDESRRICVLENGEADPMEGEWVWKGAL 120 EP GRYS+NLWAPEIH L+ KWYIYFTANDGGGDESR+ICVLEN EADPMEG+W WKGAL Sbjct: 61 EPGGRYSHNLWAPEIHRLDNKWYIYFTANDGGGDESRQICVLENAEADPMEGQWAWKGAL 120 Query: 121 PTPVPGLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPTLDW 180 PTPVPGLDGTV+T QLYFLYAGYGH+PDYGSAIYIMRMSNPWTL GDHVLLTAPTL W Sbjct: 121 PTPVPGLDGTVMTAGNQLYFLYAGYGHFPDYGSAIYIMRMSNPWTLTGDHVLLTAPTLSW 180 Query: 181 EKQGGMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKSPVP 240 EKQGGMAINEGPV L RNGRI++VYSASTTWSEDY+LG+LTMEE+ DPM+ SWTK+ P Sbjct: 181 EKQGGMAINEGPVILRRNGRIFMVYSASTTWSEDYSLGMLTMEENGDPMDLESWTKAMQP 240 Query: 241 VFHKSVENGVYATGHNSFTVSPDGEEDWIVYHALPAPGADAGLRATCIQRFTWKEDRTPN 300 VF KSVENGVYATGHNSFT SPDG+EDWIVYHALPAPG + LR+T IQ+F WK D TP+ Sbjct: 241 VFFKSVENGVYATGHNSFTQSPDGKEDWIVYHALPAPGVETALRSTRIQKFGWKPDGTPD 300 Query: 301 FGIPVSADEDIAAPSGE 317 FG+P + +A PSGE Sbjct: 301 FGVPAGESDALAKPSGE 317 >B3KBZ4.1 B3KBZ4_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 318 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/313 (72%), Positives = 256/313 (81%) Query: 4 TETFRNPIVARAADPWVLRHTDGNYYFMHXXXXXXXXXXXXXXXXXAQGRKKTIWSPEPN 63 T TF NPIVA AADPWVL+HTDG YYFM A+GR+KTIWSPEP Sbjct: 5 TTTFSNPIVANAADPWVLKHTDGYYYFMSTQPGRLELTRSSTLTGLAEGRRKTIWSPEPG 64 Query: 64 GRYSYNLWAPEIHHLNGKWYIYFTANDGGGDESRRICVLENGEADPMEGEWVWKGALPTP 123 G YSYNLWAPEIH LN KWYIY+TANDGGGDESR +CVLEN +DP+EGEWVWKGA+ TP Sbjct: 65 GPYSYNLWAPEIHDLNDKWYIYYTANDGGGDESRGLCVLENEHSDPLEGEWVWKGAMKTP 124 Query: 124 VPGLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPTLDWEKQ 183 VPGLDGTV+TV+ +LYFLYAGYGH+P+YGSAIYI +M+NPWTL G+H LLTAPTL WEKQ Sbjct: 125 VPGLDGTVMTVRNRLYFLYAGYGHFPEYGSAIYIAQMANPWTLTGEHRLLTAPTLTWEKQ 184 Query: 184 GGMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKSPVPVFH 243 GGMAINEGPVTLHRNGRI+LVYSASTTWSEDYALG+LTM+E ADPM+P+SW KS PVF Sbjct: 185 GGMAINEGPVTLHRNGRIFLVYSASTTWSEDYALGMLTMDEDADPMDPASWQKSMEPVFR 244 Query: 244 KSVENGVYATGHNSFTVSPDGEEDWIVYHALPAPGADAGLRATCIQRFTWKEDRTPNFGI 303 KS+ENGVYATGHNSFT SPD +EDWIV+HALP+ ADA +R+T IQ+F WK D TP+FG+ Sbjct: 245 KSIENGVYATGHNSFTRSPDDQEDWIVFHALPSADADASIRSTRIQKFGWKLDGTPDFGV 304 Query: 304 PVSADEDIAAPSG 316 P S PSG Sbjct: 305 PWSDAHHQPVPSG 317 >B1D8D6.1 B1D8D6_9BACL Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 317 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/317 (68%), Positives = 248/317 (78%) Query: 1 MAGTETFRNPIVARAADPWVLRHTDGNYYFMHXXXXXXXXXXXXXXXXXAQGRKKTIWSP 60 M ETF NPIVA A DPWV +HTDG YY+M A GRK+TIW+P Sbjct: 1 MTQAETFNNPIVANAGDPWVYKHTDGYYYYMCTRGNRLVLTQSASLTGLAGGRKQTIWTP 60 Query: 61 EPNGRYSYNLWAPEIHHLNGKWYIYFTANDGGGDESRRICVLENGEADPMEGEWVWKGAL 120 E G YS NLWAPEIH LN KWYIY+TANDGGGD++RRICVLEN +ADP+EGEW WKGAL Sbjct: 61 EAGGPYSSNLWAPEIHFLNNKWYIYYTANDGGGDDTRRICVLENEQADPLEGEWAWKGAL 120 Query: 121 PTPVPGLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPTLDW 180 TPVPGLDGTV+ + EQLYFLYAGYGH+PDYGSAIYIMRM+NPWTL G+ +LTAPTL+W Sbjct: 121 QTPVPGLDGTVLEMGEQLYFLYAGYGHFPDYGSAIYIMRMTNPWTLTGEQTMLTAPTLEW 180 Query: 181 EKQGGMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKSPVP 240 EKQGGMAINEGPV L RNGR++L+YSASTTWSEDY+LG+LTME+SADPM SWTK+ P Sbjct: 181 EKQGGMAINEGPVMLKRNGRVFLIYSASTTWSEDYSLGMLTMEDSADPMAADSWTKTMQP 240 Query: 241 VFHKSVENGVYATGHNSFTVSPDGEEDWIVYHALPAPGADAGLRATCIQRFTWKEDRTPN 300 VF KSVENGVYATGHNSFT SPD +EDWIV+HAL APG + RAT IQ+F W D +P+ Sbjct: 241 VFKKSVENGVYATGHNSFTKSPDDQEDWIVFHALHAPGVETKHRATRIQKFGWHSDGSPD 300 Query: 301 FGIPVSADEDIAAPSGE 317 FG+P + PSGE Sbjct: 301 FGVPYGDTFALKVPSGE 317 >A9U6V4.1 A9U6V4_PHYPA Predicted protein (Fragment) Length = 540 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 128/174 (73%), Positives = 150/174 (86%), Gaps = 1/174 (0%) Query: 132 VTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPTLDWEKQGGMAINEG 191 ++++ +LYFLYAGYG++PDYGSAIYI +M+NPWTL G+H LLTAPTL WEKQGGMAINEG Sbjct: 1 MSLRNELYFLYAGYGNFPDYGSAIYIAQMANPWTLTGEHHLLTAPTLPWEKQGGMAINEG 60 Query: 192 PVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKSPVPVFHKSVENGVY 251 PVTLHRNGRI+LVYSASTTWSEDYALG+LTM E ADP++PSSW KS PVF KSVENGVY Sbjct: 61 PVTLHRNGRIFLVYSASTTWSEDYALGMLTMNEEADPLDPSSWQKSMQPVFRKSVENGVY 120 Query: 252 ATGHNSFTVSPDGEEDWIVYHALPAPGADAGLRATCIQRFTWKEDRTPNFGIPV 305 ATGHNSFT SPD +EDWIVYHALP+PG+D LR+T IQ+F W D P + + + Sbjct: 121 ATGHNSFTKSPDDQEDWIVYHALPSPGSDTSLRSTRIQKFGWNPD-GPEYAVSI 173 >B1D8I7.1 B1D8I7_9BACL Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 485 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 133/315 (42%), Positives = 179/315 (56%), Gaps = 16/315 (5%) Query: 7 FRNPIVARAADPWVLRHTDGNYYFMHXXXXXXXXXXXXXXXXXAQGRKKTIWSPEPNGRY 66 F N I ADPW+ +HTDG YYF G K+ I + Sbjct: 38 FYNVIFQDGADPWIYKHTDGFYYFTKTTGGDVTIWKSSSLTGVDAGTKRVISTG------ 91 Query: 67 SYNLWAPEIHHLNGKWYIYFTANDGGGDESRRICVLENGEADPMEGEWVWKGALPTPVP- 125 N+WAPEIH++NG WYIY+ A D G +++ R+ VLEN ADPM G WV KG + Sbjct: 92 CCNVWAPEIHYINGAWYIYY-AKDDGNNDNHRMYVLENTSADPMTGTWVNKGQITDSANR 150 Query: 126 -GLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPTLDWEKQG 184 +DGTV+ V LYF+++G+ + +YI MSNPWT++ V + PT WE Sbjct: 151 WAIDGTVLQVNNNLYFIWSGWEGTTNVSQKLYIAHMSNPWTIDSARVEIAHPTYSWETNT 210 Query: 185 GMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKSPVPVFHK 244 ++NEGP + NG I LVYSAS +W++ Y LG++T S++ ++ SSWTK P+F Sbjct: 211 SPSVNEGPQVIVHNGVISLVYSASGSWTDGYCLGLVTANASSNLLQASSWTKRNQPIFQS 270 Query: 245 SVENGVYATGHNSFTVSPDGEEDWIVYHALPAPGA--DAGLRATCIQRFTWKEDRTPNFG 302 NG+Y GH+SFT SPDG EDWIVYH GA + +RA Q+FTW D TPN G Sbjct: 271 G--NGLYGPGHHSFTKSPDGTEDWIVYHTAKYSGAGWNREIRA---QKFTWNADNTPNLG 325 Query: 303 IPVSADEDIAAPSGE 317 +P + + IA PSG+ Sbjct: 326 VPAAPNTPIAIPSGD 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,295,046,460 Number of extensions: 105660820 Number of successful extensions: 173986 Number of sequences better than 1.0e-05: 250 Number of HSP's gapped: 173034 Number of HSP's successfully gapped: 250 Length of query: 317 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 182 Effective length of database: 1,788,859,178 Effective search space: 325572370396 Effective search space used: 325572370396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)