BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0036.p
         (81 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q24RC0.1 Q24RC0_DESHY Putative uncharacterized protein                 76   1e-12
B8FPX8.1 B8FPX8_DESHD YCII-related                                     76   1e-12
B3KHE5.1 B3KHE5_9BACI YCII-related                                     69   9e-11
C4G5U3.1 C4G5U3_ABIDE Putative uncharacterized protein                 65   2e-09
Q67NW0.1 Q67NW0_SYMTH Putative uncharacterized protein                 53   9e-06

>Q24RC0.1 Q24RC0_DESHY Putative uncharacterized protein
          Length = 92

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 49/75 (65%)

Query: 2  DIIRAHVKHLQELERSGQLVMCGPFSDSPGGMVXXXXXXXXXXXXXXQRDPYILTGIRSY 61
          +II+ HV++L+EL+  G+LV+CGPF+D PGGMV              Q DP+I +G +S+
Sbjct: 15 EIIKDHVEYLKELKSQGRLVLCGPFTDYPGGMVVLLAEDLAEATSIAQADPFIASGCKSF 74

Query: 62 ELRTWGLSHAGNRHM 76
          E+RT   ++ GN ++
Sbjct: 75 EMRTLAEANEGNNYL 89


>B8FPX8.1 B8FPX8_DESHD YCII-related
          Length = 92

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 49/75 (65%)

Query: 2  DIIRAHVKHLQELERSGQLVMCGPFSDSPGGMVXXXXXXXXXXXXXXQRDPYILTGIRSY 61
          +II+ HV++L+EL+  G+LV+CGPF+D PGGMV              Q DP+I +G +S+
Sbjct: 15 EIIKDHVEYLKELKSQGRLVLCGPFTDYPGGMVVLLAEDLAEATSIAQADPFIASGCKSF 74

Query: 62 ELRTWGLSHAGNRHM 76
          E+RT   ++ GN ++
Sbjct: 75 EMRTLAEANEGNNYL 89


>B3KHE5.1 B3KHE5_9BACI YCII-related
          Length = 91

 Score = 69.3 bits (168), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query: 2  DIIRAHVKHLQELERSGQLVMCGPFSDSPGGMVXXXXXXXXXXXXXXQRDPYILTGIRSY 61
          +II+ HV++L+ LE  G+L++CGPF+D PGG+V                DP+I +G +SY
Sbjct: 16 EIIKGHVEYLRGLESQGKLMLCGPFADYPGGIVIIQAEDLMEATNIANADPFIASGCKSY 75

Query: 62 ELRTWGLSHAGNRHM 76
          E+RT  L++  N ++
Sbjct: 76 EIRTLMLANEENNYL 90


>C4G5U3.1 C4G5U3_ABIDE Putative uncharacterized protein
          Length = 91

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%)

Query: 1  MDIIRAHVKHLQELERSGQLVMCGPFSDSPGGMVXXXXXXXXXXXXXXQRDPYILTGIRS 60
          M+I++ HV +L+EL+  G+L++CGPF+D  GG+V              + DP+I  G ++
Sbjct: 15 MEIVKRHVGYLKELDDLGKLILCGPFTDYDGGIVILECRDIEEARAIAESDPFIKDGYKT 74

Query: 61 YELRTWGLSHAGNRH 75
          +ELRT  +++  N +
Sbjct: 75 FELRTLNIANKDNNY 89


>Q67NW0.1 Q67NW0_SYMTH Putative uncharacterized protein
          Length = 97

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 2  DIIRAHVKHLQELERSGQLVMCGPFSDSPGGMVXXXXXXXXXXXXXXQRDPYILTGIRSY 61
          +++RAH  HL+ L   G+LV+CGPF+D  GGM                 DP + +G+   
Sbjct: 20 ELMRAHRAHLKRLAEQGRLVLCGPFADRTGGMTVIRAASLAEAEAVAAADPLVASGMEDC 79

Query: 62 ELRTW 66
          E+R W
Sbjct: 80 EIREW 84


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 438,000,928
Number of extensions: 11267367
Number of successful extensions: 19485
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 19488
Number of HSP's successfully gapped: 5
Length of query: 81
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 30
Effective length of database: 2,580,224,438
Effective search space: 77406733140
Effective search space used: 77406733140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)