BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0035.p (185 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DM74.1 B1DM74_9BACL Putative uncharacterized protein 246 8e-64 B3K9R6.1 B3K9R6_9BACI Putative uncharacterized protein 232 1e-59 C0ZDV1.1 C0ZDV1_BREBN Putative uncharacterized protein ypsA 187 4e-46 A3ID97.1 A3ID97_9BACI YpsA 171 3e-41 B1HYB1.1 B1HYB1_LYSSC UPF0398 protein 167 5e-40 >B1DM74.1 B1DM74_9BACL Putative uncharacterized protein Length = 197 Score = 246 bits (627), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 116/184 (63%), Positives = 143/184 (77%) Query: 1 MTTLLVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACE 60 M TL TGYRAHEL I++ KH+ IPYIKKA+ +L+PL+EEG++W+ITPGQYG DLW CE Sbjct: 1 MKTLFATGYRAHELQIYNQKHKHIPYIKKAIEAKLIPLIEEGLEWVITPGQYGFDLWVCE 60 Query: 61 VVLELKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFR 120 V LEL+ YP LKL IITA P+E+W +EK+ YR+IV DY GAVS+ PY G WQF+ Sbjct: 61 VALELQSVYPQLKLSIITAFMNPDEQWNDEKKEYYRQIVTKVDYYGAVSHQPYVGPWQFQ 120 Query: 121 ARDDLLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEES 180 ARD+LLFRKSD +LLFYDEDAAEGSPK+ KE+A K ++E Y L L+ AE+IQN A+EES Sbjct: 121 ARDELLFRKSDGLLLFYDEDAAEGSPKYVKEKALKKHQEDGYELILITAEDIQNAAEEES 180 Query: 181 QQGY 184 Y Sbjct: 181 YDSY 184 >B3K9R6.1 B3K9R6_9BACI Putative uncharacterized protein Length = 186 Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 106/180 (58%), Positives = 134/180 (74%) Query: 1 MTTLLVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACE 60 M +L+TGYRAHELGI+++KHQGIPYI+KA+ NRLVPL+EEG+ W+ITPGQYGVDLWA E Sbjct: 1 MENILITGYRAHELGIYNNKHQGIPYIRKAIANRLVPLLEEGLQWVITPGQYGVDLWAIE 60 Query: 61 VVLELKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFR 120 +ELK QYP LK I+TA+ PEE+W ++K+ ++ ++ G D+ VS +PY G WQF Sbjct: 61 ATIELKSQYPHLKCSILTAYQNPEEQWNDDKKAYFQEVMKGVDFYAPVSKSPYQGPWQFT 120 Query: 121 ARDDLLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEES 180 ARDDLL RK+D ILL YDED E SP+F KERA K Y + +EEIQ +ADEES Sbjct: 121 ARDDLLLRKTDGILLVYDEDGGEASPRFIKERALKKQAADGYRFISIGSEEIQAVADEES 180 >C0ZDV1.1 C0ZDV1_BREBN Putative uncharacterized protein ypsA Length = 188 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 92/184 (50%), Positives = 123/184 (66%), Gaps = 1/184 (0%) Query: 1 MTTLLVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACE 60 + L V+GY+AHELGIF+ K+ G+ IKKAL LV +EE ++W+I GQ GV++WA E Sbjct: 2 LKRLFVSGYKAHELGIFNEKNPGLAIIKKALKRELVRFLEEELEWVIISGQLGVEMWAAE 61 Query: 61 VVLELKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFR 120 VLELK++YP LKL +IT EEKWKEE Q+ YR IV ADY +V PY G+WQ Sbjct: 62 TVLELKKEYPHLKLAVITPFLNQEEKWKEETQDYYRNIVTQADYINSVYQTPYQGAWQLG 121 Query: 121 ARDDLLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEES 180 +D L SD ILL YDE+ EGSPKF + A+K + DY L+ ++A ++Q IA+E+ Sbjct: 122 EKDKFLLSNSDGILLVYDEE-NEGSPKFLSKLAAKKADNSDYQLFRINAYDLQAIAEEQQ 180 Query: 181 QQGY 184 Q+ Y Sbjct: 181 QELY 184 >A3ID97.1 A3ID97_9BACI YpsA Length = 179 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 121/180 (67%), Gaps = 1/180 (0%) Query: 5 LVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACEVVLE 64 ++TGY+ HELGIF+ KH GI IKKAL NRL L++EG++W+I GQ GV+ W+ EVV Sbjct: 1 MITGYKPHELGIFNDKHPGISIIKKALENRLRLLLDEGLEWVIISGQQGVESWSAEVVWT 60 Query: 65 LKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFRARDD 124 LK+++P LK +IT ++ W++ K+ +Y+ I+A AD+ +++ PY+ WQF +D Sbjct: 61 LKKEFPHLKYAVITPFLEQDKNWQDHKKEKYQTIIARADFVTSITKKPYEAPWQFIEKDK 120 Query: 125 LLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEESQQGY 184 + + +D +LL YDE+ EGSPK+ K A K E DY L+ ++A ++Q IA+E QQ + Sbjct: 121 FIIQNTDGLLLIYDEE-NEGSPKYIKRLAEKFMESHDYSLFTINAYDLQIIAEEIQQQDW 179 >B1HYB1.1 B1HYB1_LYSSC UPF0398 protein Length = 179 Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 119/180 (66%), Gaps = 1/180 (0%) Query: 5 LVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACEVVLE 64 ++TGY+ HELGIF+ KH I IKKAL NRL L++EG++W+I GQ GV+ W+ EVV Sbjct: 1 MITGYKPHELGIFNDKHPRIGIIKKALENRLRLLLDEGLEWVIISGQQGVESWSAEVVWT 60 Query: 65 LKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFRARDD 124 LK+++P LK +IT E+ W++ K+ +Y+ I+A AD+ +++ PY+ WQF +D Sbjct: 61 LKKEFPHLKYAVITPFLEQEKNWQDPKKEKYQTIIARADFVTSITKKPYEAPWQFIEKDK 120 Query: 125 LLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEESQQGY 184 + + +D +LL YDE+ EGSPK+ K A K E DY L ++A ++Q IA+E QQ + Sbjct: 121 FIIQNTDGLLLIYDEE-NEGSPKYIKRLAEKFMESHDYSLLTINAYDLQMIAEEIQQQDW 179 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,216,903,087 Number of extensions: 51806805 Number of successful extensions: 110361 Number of sequences better than 1.0e-05: 250 Number of HSP's gapped: 110118 Number of HSP's successfully gapped: 250 Length of query: 185 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 58 Effective length of database: 1,864,227,298 Effective search space: 108125183284 Effective search space used: 108125183284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)