BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0033.p (286 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9K6M6.1 Q9K6M6_BACHD Transcriptional regulator 245 4e-63 B1D8G5.1 B1D8G5_9BACL Transcriptional regulator, AraC family 227 9e-58 Q5WI65.1 Q5WI65_BACSK Transcriptional regulator 213 2e-53 B9MK63.1 B9MK63_ANATD Transcriptional regulator, AraC family 170 2e-40 A4XK77.1 A4XK77_CALS8 Transcriptional regulator, AraC family 155 5e-36 >Q9K6M6.1 Q9K6M6_BACHD Transcriptional regulator Length = 279 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/263 (43%), Positives = 175/263 (66%), Gaps = 3/263 (1%) Query: 27 LPITLDSMGYNPDQEKVSRPEGYHAYHWLQTSQGEGIIHFENKKLTLAEGSGVLLLPGIS 86 LP+ +++G+NP QE V+RP GY YHW+QT G+G I F+N+++ L +GVLLLP I Sbjct: 14 LPLFAETIGFNPVQEYVTRPNGYPYYHWIQTVSGQGSIMFQNRQINLTTNNGVLLLPHIP 73 Query: 87 HRYEALSAE--PWCTYYLTFGGSSARQILDSLGMNANSFYRWESEAPLPLMLKEMLDRHD 144 H Y+ ++ PW T Y+TF G+ +++L +L + ++F+ W EAP+ L ++L + D Sbjct: 74 HSYQNAQSDSTPWQTLYVTFSGTMVKEVLITLELYQSAFFHWNQEAPISTFLAKVLKQSD 133 Query: 145 AAEDMFSLGASTDAYRFLLTLSKYGHLHNNTAISRN-VDKVQPLLKWMDSHYGDPDIGLH 203 D FS+ AS+ Y FLL L KYG +N+ A N + ++ L+ WM + +PD+GL Sbjct: 134 ETRDSFSISASSAVYEFLLLLKKYGKTNNSNAKETNHLVRLYSLIDWMKTQLSNPDVGLD 193 Query: 204 DLALQLDVSGRYLNSLFLQTFGLSPYAYFVRLRIRKSKELLVSQPDLTVKAISQQVGFRD 263 ++A ++ S R+LNSLF + F L+PYAYFV LRI++SK+LL+ T+ I++QVGFR Sbjct: 194 EMARFINTSKRHLNSLFQKNFHLTPYAYFVNLRIQQSKKLLLEDNCATIGEIAKQVGFRS 253 Query: 264 VSHFVATFRKQSGTTPDQFRRLH 286 SHFVATFRK G P+++R+L+ Sbjct: 254 TSHFVATFRKMVGIPPEKYRQLN 276 >B1D8G5.1 B1D8G5_9BACL Transcriptional regulator, AraC family Length = 275 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 111/261 (42%), Positives = 166/261 (63%), Gaps = 2/261 (0%) Query: 27 LPITLDSMGYNPDQEKVSRPEGYHAYHWLQTSQGEGIIHFENKKLTLAEGSGVLLLPGIS 86 LP+ L+++G+NPDQE + RPEGY +HWLQT +GEG + + + E SGVLL PG Sbjct: 14 LPLQLETIGFNPDQETLDRPEGYPYFHWLQTLEGEGELTVSGQTWKMNERSGVLLAPGTP 73 Query: 87 HRYEALSAEPWCTYYLTFGGSSARQILDSLGMNANSFYRWES-EAPLPLMLKEMLDRHDA 145 HRYEA + W T Y+TF G A I+ S+G + ++WE+ + L +ML ++ Sbjct: 74 HRYEARNGW-WQTGYITFRGGMAASIVQSIGWGSAERFQWEAGNDRISDQLFKMLTFAES 132 Query: 146 AEDMFSLGASTDAYRFLLTLSKYGHLHNNTAISRNVDKVQPLLKWMDSHYGDPDIGLHDL 205 D +S D Y+FL L N ++S+ ++++Q LL W++ H+ +P+IGL D+ Sbjct: 133 GSDPSGWQSSADLYQFLTLLRTNARTDNRPSMSKRLERIQGLLAWLEQHFANPEIGLADM 192 Query: 206 ALQLDVSGRYLNSLFLQTFGLSPYAYFVRLRIRKSKELLVSQPDLTVKAISQQVGFRDVS 265 A QL + R LN F + FG + Y+Y ++LRIRK+KE L S+PD TV+ I + VGFRD S Sbjct: 193 AAQLGIGERQLNERFRELFGQTAYSYLIQLRIRKAKEWLPSRPDWTVRRIGEAVGFRDAS 252 Query: 266 HFVATFRKQSGTTPDQFRRLH 286 HFV+TFR++ G TP+ +R+L+ Sbjct: 253 HFVSTFRQREGMTPETYRKLY 273 >Q5WI65.1 Q5WI65_BACSK Transcriptional regulator Length = 283 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/261 (41%), Positives = 158/261 (60%), Gaps = 2/261 (0%) Query: 27 LPITLDSMGYNPDQEKVSRPEGYHAYHWLQTSQGEGIIHFENKKLTLAEGSGVLLLPGIS 86 LP+ L+++G DQE ++RP GY YHWLQT GEG + + + E SG+LL PG Sbjct: 13 LPLQLETIGIQYDQEPMTRPHGYPYYHWLQTLAGEGELSMNGRTWNMPERSGILLAPGTP 72 Query: 87 HRYEALSAEPWCTYYLTFGGSSARQILDSLGMNANSFYRWES-EAPLPLMLKEMLDRHDA 145 H Y+ S + W T Y+TF GS+A I+ SLG + ++W + P+ +K +L ++ Sbjct: 73 HHYKPRS-DSWQTGYITFHGSTAGNIVQSLGWSIIEHFQWGAGHDPITGQMKSLLAFAES 131 Query: 146 AEDMFSLGASTDAYRFLLTLSKYGHLHNNTAISRNVDKVQPLLKWMDSHYGDPDIGLHDL 205 D S D YRFL L IS+ +++VQ LL W++ Y +P+IGL ++ Sbjct: 132 GGDPSGWRYSADLYRFLTLLRTEARTDKRPPISKRLNRVQDLLHWLEQEYANPEIGLAEM 191 Query: 206 ALQLDVSGRYLNSLFLQTFGLSPYAYFVRLRIRKSKELLVSQPDLTVKAISQQVGFRDVS 265 A QL + R LN F FG + YAY ++LR+RK+KE L S+PD TV+ I + VGFRD S Sbjct: 192 AAQLGIGKRQLNERFRDLFGQTAYAYLIQLRLRKAKEWLPSRPDWTVRRIGEAVGFRDAS 251 Query: 266 HFVATFRKQSGTTPDQFRRLH 286 HFVATFR++ G TP+ +R+L+ Sbjct: 252 HFVATFRQKEGMTPETYRKLY 272 >B9MK63.1 B9MK63_ANATD Transcriptional regulator, AraC family Length = 273 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 155/263 (58%), Gaps = 10/263 (3%) Query: 27 LPITLDSMGYNPDQEKVSRPEGYHAYHWLQTSQGEGIIHFENKKLTLAEGSGVLLLPGIS 86 LPI L S+G+N QE + R G+ YH+L T+QG G++ + K+ + E + L PG+ Sbjct: 15 LPIYLKSVGFNRYQEHIVRKNGHPDYHYLHTAQGRGVLIVDGKEYIVDESTAFFLWPGVP 74 Query: 87 HRYEALSAEPWCTYYLTFGGSSARQILDSLGMNANSFYRWESEAPLPLMLKEMLDRHDAA 146 H Y A+S+E W T +LTF G + IL ++G+ ++ S+ L +L+ + ++ Sbjct: 75 HEYYAISSE-WSTLWLTFNGPACEMILKTMGVRPFEIFKLSSKKYLEGILEAISNKASFY 133 Query: 147 EDMFSLGASTDAYRFLLTLSKYGHLHNNTAISRNVD----KVQPLLKWMDSHYGDPDIGL 202 + S+ S Y F+L ++ L+ I RN + K+ P+LK+++ +Y +I L Sbjct: 134 NYIVSIECSQLIYSFILHMA----LNLQNKIERNFESNYLKLLPILKYIEDNYSK-NITL 188 Query: 203 HDLALQLDVSGRYLNSLFLQTFGLSPYAYFVRLRIRKSKELLVSQPDLTVKAISQQVGFR 262 +L+ Q+ +S ++L S+F +TF +PY Y +R+RI+K+KELL+ + +K + +VGF+ Sbjct: 189 DELSKQIGLSPQHLCSVFKKTFQTTPYEYLIRIRIQKAKELLIKNSMIQIKEVCYEVGFK 248 Query: 263 DVSHFVATFRKQSGTTPDQFRRL 285 + S+F F+K G TP QF+RL Sbjct: 249 NPSYFCYMFKKLEGITPMQFKRL 271 >A4XK77.1 A4XK77_CALS8 Transcriptional regulator, AraC family Length = 273 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 151/261 (57%), Gaps = 6/261 (2%) Query: 27 LPITLDSMGYNPDQEKVSRPEGYHAYHWLQTSQGEGIIHFENKKLTLAEGSGVLLLPGIS 86 LPI L S+G N QE + R G+ YH+L T +G G + + +K + E + L PGI+ Sbjct: 15 LPIYLKSVGSNEYQEHIIRKNGHPDYHYLHTLEGSGYLIVDGQKYLVDENTAFFLYPGIA 74 Query: 87 HRYEALSAEPWCTYYLTFGGSSARQILDSLGMNANSFYRWESEAPLPLMLKEMLDRHDAA 146 H Y A +++ W T +LTF G ++ IL ++G+ ++ ++ L ML+ + ++ Sbjct: 75 HEYFAATSK-WSTIWLTFNGPASETILKTMGIRPFEIFKLTNKKYLEGMLEAISNKASVY 133 Query: 147 EDMFSLGASTDAYRFLLTLSKYGHLHNNTA--ISRNVDKVQPLLKWMDSHYGDPDIGLHD 204 + S+ S Y F+L + + +L N N K+ P+L++++ +Y I L + Sbjct: 134 NYIVSIECSQLIYSFILHM--FLNLQNKIEKNFENNYLKLLPVLQYIEENYKKA-ISLDE 190 Query: 205 LALQLDVSGRYLNSLFLQTFGLSPYAYFVRLRIRKSKELLVSQPDLTVKAISQQVGFRDV 264 ++ +++S ++L ++F +TF +PY Y +R+RI+K+KELL+ Q + +K + +VGF++ Sbjct: 191 ISSIVNLSPQHLCTVFKKTFQTTPYEYLIRVRIQKAKELLMRQSSIQIKEVCYEVGFKNP 250 Query: 265 SHFVATFRKQSGTTPDQFRRL 285 S+F F+K G TP QF+RL Sbjct: 251 SYFCYMFKKLEGITPLQFKRL 271 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,807,011,216 Number of extensions: 77291834 Number of successful extensions: 179748 Number of sequences better than 1.0e-05: 1736 Number of HSP's gapped: 184393 Number of HSP's successfully gapped: 1736 Length of query: 286 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 152 Effective length of database: 1,798,280,193 Effective search space: 273338589336 Effective search space used: 273338589336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)