BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0029.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDP9.1 B3KDP9_9BACI Binding-protein-dependent transport system... 457 e-127 B3K4S3.1 B3K4S3_9BACI Binding-protein-dependent transport system... 432 e-119 B1YJN1.1 B1YJN1_EXIS2 Binding-protein-dependent transport system... 375 e-102 C4L2X1.1 C4L2X1_EXISA Binding-protein-dependent transport system... 370 e-101 A6CLU6.1 A6CLU6_9BACI Multiple sugar-binding transport system pe... 365 3e-99 >B3KDP9.1 B3KDP9_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/273 (81%), Positives = 250/273 (91%) Query: 1 LFFTLITIIPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVL 60 LFF + IIPF+MGMYYSFTDWNGVSGNV WVG DNFK IFTND F SFWFT +FT++ Sbjct: 21 LFFGITIIIPFVMGMYYSFTDWNGVSGNVEWVGLDNFKQIFTNDSAFAQSFWFTTKFTIV 80 Query: 61 GVVLTNIVGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDIT 120 GV+LTN+VGFFLAYFLTK ++ RN LRTIFFMPNVIGGLLLGFIWQFIFIKGFAT+G+ T Sbjct: 81 GVLLTNLVGFFLAYFLTKNIRARNWLRTIFFMPNVIGGLLLGFIWQFIFIKGFATVGEAT 140 Query: 121 GWSFFNLPWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRMQ 180 G FFNLPWLGD TGFW I+MVFVWQSSGYLMVIYIAS++NVSKEV+EAAEIDGA+R Q Sbjct: 141 GIPFFNLPWLGDEVTGFWGIIMVFVWQSSGYLMVIYIASITNVSKEVMEAAEIDGANRFQ 200 Query: 181 VLRSIIVPLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFLNNR 240 VL+SIIVPLIMPAVT+ LFLAISWSFKMFDLNLSLTKGGP++STES+AMN+YNEAFLNNR Sbjct: 201 VLKSIIVPLIMPAVTVCLFLAISWSFKMFDLNLSLTKGGPYRSTESLAMNVYNEAFLNNR 260 Query: 241 YGLGTAKALLFFLIVAIITVIQVRVTKSKEVEA 273 YGLGTAK+L+FFL+VA+IT+IQVR+TK KEVEA Sbjct: 261 YGLGTAKSLIFFLVVAVITLIQVRLTKQKEVEA 293 >B3K4S3.1 B3K4S3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 212/273 (77%), Positives = 242/273 (88%) Query: 1 LFFTLITIIPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVL 60 +FF LI IIPFL+G+YYSFT+WNGVS + +VG DNF IFTND F +FWFT RFTVL Sbjct: 21 IFFILIMIIPFLLGLYYSFTNWNGVSSKIDFVGFDNFVTIFTNDDKFRDAFWFTTRFTVL 80 Query: 61 GVVLTNIVGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDIT 120 GV+LTN++GF LAYFLTKPLKTRN+LRTIFFMPNVIGGLLLGFIWQFIF+KGFA +G+ T Sbjct: 81 GVILTNLLGFILAYFLTKPLKTRNVLRTIFFMPNVIGGLLLGFIWQFIFVKGFAAIGNAT 140 Query: 121 GWSFFNLPWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRMQ 180 FFNLPWLG T FWAIV+VFVWQ++GYLMVIYI+SL+NV K++LEAAEIDGASR Q Sbjct: 141 NLGFFNLPWLGTKGTAFWAIVIVFVWQTAGYLMVIYISSLNNVPKDILEAAEIDGASRGQ 200 Query: 181 VLRSIIVPLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFLNNR 240 VLRSII+PL+MPAVT+ LFLAISWSFKMFDLNLSLTKGGPF STESVAMNIYNEA+ NNR Sbjct: 201 VLRSIIIPLVMPAVTVCLFLAISWSFKMFDLNLSLTKGGPFGSTESVAMNIYNEAYTNNR 260 Query: 241 YGLGTAKALLFFLIVAIITVIQVRVTKSKEVEA 273 GLGTAKA++FF++VAIIT +QVR TKSKEVEA Sbjct: 261 LGLGTAKAVIFFIVVAIITSLQVRFTKSKEVEA 293 >B1YJN1.1 B1YJN1_EXIS2 Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/273 (63%), Positives = 226/273 (82%) Query: 1 LFFTLITIIPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVL 60 L F +I ++PF G+ YSFTDWNG++G ++W+G DN+ +FT D F SFW T ++TV+ Sbjct: 24 LVFAVIVLVPFFNGVMYSFTDWNGITGELNWIGFDNYVRLFTVDEQFQQSFWLTTKYTVV 83 Query: 61 GVVLTNIVGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDIT 120 VVLTN+VGF LA+ LT+ ++TRN LRTIFFMPN+IGGL+LGF+WQFI++KGFA++G++T Sbjct: 84 AVVLTNLVGFILAFLLTQNIRTRNFLRTIFFMPNLIGGLILGFVWQFIYVKGFASIGELT 143 Query: 121 GWSFFNLPWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRMQ 180 GWS F LPWLGDA TGFW IV+V +WQ GY+MVIYIA+L NV +E++EAA+IDGA+R+ Sbjct: 144 GWSLFELPWLGDARTGFWGIVIVSIWQGGGYIMVIYIAALQNVPQELIEAAKIDGANRLS 203 Query: 181 VLRSIIVPLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFLNNR 240 LR+I +PLIMP+VTI LFL ISWSFK+FD NLSLT GGPFKSTE +A+NIY E+F NN Sbjct: 204 TLRNITIPLIMPSVTICLFLTISWSFKLFDTNLSLTNGGPFKSTEMLALNIYKESFTNNN 263 Query: 241 YGLGTAKALLFFLIVAIITVIQVRVTKSKEVEA 273 GLG+AKA++FF++VA ITV QV +TK +EVEA Sbjct: 264 LGLGSAKAIIFFVVVAAITVTQVYLTKKREVEA 296 >C4L2X1.1 C4L2X1_EXISA Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/273 (64%), Positives = 223/273 (81%) Query: 1 LFFTLITIIPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVL 60 L F I +IPF G+YYSFTDWNGV+G +++VG DN+ +F D F +SFW T ++T++ Sbjct: 29 LAFVAIVLIPFFNGIYYSFTDWNGVTGELNFVGLDNYHRLFFEDEQFRASFWITTKYTLV 88 Query: 61 GVVLTNIVGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDIT 120 V+LTNIVGF LA LT +KTRN LRTIFFMPN+IGGL+LGFIWQFI++KGFA++G +T Sbjct: 89 SVLLTNIVGFSLALLLTMNIKTRNFLRTIFFMPNLIGGLILGFIWQFIYVKGFASIGALT 148 Query: 121 GWSFFNLPWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRMQ 180 GWS F LPWLGDA T FW IV+V +WQ GY+MVIYIA+L NV +++EAA IDGA+R++ Sbjct: 149 GWSLFELPWLGDAQTAFWGIVIVAIWQGGGYVMVIYIAALQNVPTDLMEAARIDGANRLK 208 Query: 181 VLRSIIVPLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFLNNR 240 +LR I +P+IMP++TI LFL ISWSFK+FD NLSLT GGPFKSTE +A+NIY E+F+NN Sbjct: 209 MLRHITLPMIMPSITICLFLTISWSFKVFDTNLSLTNGGPFKSTEMLALNIYTESFVNNN 268 Query: 241 YGLGTAKALLFFLIVAIITVIQVRVTKSKEVEA 273 YGLG+AKA++FFL+VA ITV QV VTK +EVEA Sbjct: 269 YGLGSAKAVIFFLVVAAITVTQVYVTKKREVEA 301 >A6CLU6.1 A6CLU6_9BACI Multiple sugar-binding transport system permease Length = 313 Score = 365 bits (936), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 177/273 (64%), Positives = 219/273 (80%) Query: 1 LFFTLITIIPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVL 60 LFF +I IIPFLMG+YYSFT WNGVS V WVG +N+K IF++DP F++SF FT +F Sbjct: 41 LFFLVIQIIPFLMGLYYSFTSWNGVSSAVEWVGIENYKKIFSDDPVFFNSFMFTTKFMFA 100 Query: 61 GVVLTNIVGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDIT 120 V+++N++GF A L LKTRN+LRT+FF+PNVIGGLLLGFIWQFIF+KGFA++G++T Sbjct: 101 AVLISNLLGFSFALLLNAALKTRNILRTVFFIPNVIGGLLLGFIWQFIFVKGFASLGNMT 160 Query: 121 GWSFFNLPWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRMQ 180 FF +PWLGD TT FW IV+VF WQ SGY+MVIY+A+L V +LEAA++DGAS Sbjct: 161 DIGFFKMPWLGDETTAFWGIVIVFAWQISGYMMVIYVAALQGVDNSLLEAAKMDGASAWA 220 Query: 181 VLRSIIVPLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFLNNR 240 VL II+PLI+PA TI FL IS +FK+FDLN+SLT GGPF ST+SVA+NIY EAF NNR Sbjct: 221 VLTRIIIPLILPAFTICFFLTISMAFKIFDLNISLTGGGPFNSTQSVAINIYQEAFQNNR 280 Query: 241 YGLGTAKALLFFLIVAIITVIQVRVTKSKEVEA 273 YGLGTAK++LFF++VAI T +QV VTK KEVEA Sbjct: 281 YGLGTAKSILFFVVVAIFTTVQVMVTKKKEVEA 313 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,588,776,670 Number of extensions: 65702283 Number of successful extensions: 294915 Number of sequences better than 1.0e-05: 6707 Number of HSP's gapped: 287757 Number of HSP's successfully gapped: 6716 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)