BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0027.p (542 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDQ1.1 B3KDQ1_9BACI Response regulator receiver 442 e-122 B3K4S1.1 B3K4S1_9BACI Response regulator receiver 399 e-109 B1D7N5.1 B1D7N5_9BACL Two component transcriptional regulator, A... 353 2e-95 A6CLV0.1 A6CLV0_9BACI AraC-type DNA-binding domain-containing pr... 274 2e-71 A8RP07.1 A8RP07_9CLOT Putative uncharacterized protein 187 2e-45 >B3KDQ1.1 B3KDQ1_9BACI Response regulator receiver Length = 545 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/538 (41%), Positives = 328/538 (60%), Gaps = 1/538 (0%) Query: 1 MKALIVDDEARVRKAVRLLVDWDAHQIGEVLEAGNGNEAIELIRKEKPALVIMDMMMESG 60 MKALIVDDE+RVRKA+RLLV W+AH I ++ EA NG EA+ELI +P LV+MDM+M Sbjct: 1 MKALIVDDESRVRKAIRLLVQWEAHGITDIEEAANGLEAMELIPAFRPHLVLMDMLMPLK 60 Query: 61 NGIELMSWVNEFAGNTKFIVVSGHNDFDFVRQTVRHGGIDYILKPIEPEMINNAVAKAVA 120 NG++LM W+++ + KFIV+SGH+DF+FVR T+ + G DYILKPIE ++IN AVAKA A Sbjct: 61 NGVDLMEWIHKHYPDIKFIVISGHDDFEFVRNTIWYSGTDYILKPIEEDVINQAVAKATA 120 Query: 121 AWXXXXXXXXXXXXXXIRLNEIRPIYGEKLLSALIDDPINAEASLRRLWDDGVIPHTATV 180 AW +++NE RP+Y EKLLS+LIDD + RL D+G++P Sbjct: 121 AWMAEEQERLAARQQHVQVNEYRPVYSEKLLSSLIDDRSAHSQVVNRLRDEGIVPAQTNA 180 Query: 181 SRLILVQTDPGNNPLIKRFGGDSELLYYAIVNICNEFLHLQNKGIAFRYWGGPPEIAMIL 240 RL ++Q D ++ L RFG +LL +A++NICNEFL GIAFR +G P ++ ++L Sbjct: 181 IRLAVMQIDKSDHVLYSRFGHHQDLLMFALLNICNEFLQKDRIGIAFRPFGSPHQLVLLL 240 Query: 241 WDVREPVAELINRINEGIYMTLQFRMHFGISSVGALPGGLPXXXXXXXXXXXXXXXXXXX 300 W+ V L+ IN G++ TL +MHFGIS G P +P Sbjct: 241 WEQLATVPTLLQEINSGMFRTLSRQMHFGISPEGKYPVDVPELYAQCSNALRSRDLTVLN 300 Query: 301 DYCHFSSS-EPADTGSEPPVIFADVQEEWRMAVISGNPEVLSAAARHWTQELSRRGVVTP 359 + H + + V F+ ++ W++AV+SG P + A + + + GV+TP Sbjct: 301 HFIHDAEQLRRSGMDHHRGVQFSGFEDTWKLAVLSGQPAPIGEAVDSFLAAIRKSGVLTP 360 Query: 360 EMLNSWKADALLFRSRLVREALGGQADNALAELERADALNPAPLPSGYSFSLFAWRDWSF 419 E+L W + F + ++ E ++ L + A P P Y SL W+ + Sbjct: 361 ELLERWDREIDRFANHVIHETANPSSEALLKLYKEESATIERPSPDKYVCSLAEWQQYWD 420 Query: 420 AVLQRLSQELTARAVKERNPMAEIVKYIEQNYPSDLSLQEVAGKFYVSREYISRKFKQEY 479 ++ L+ L ++ ++ + +I +IEQNY +D+SL ++A +F+VSREYISRKFKQ++ Sbjct: 421 QLMSLLASALQSQKQTGQDLIYDITAFIEQNYQNDVSLYDIANRFHVSREYISRKFKQKH 480 Query: 480 GINFSDYIGSVRIEKAKLLLQNPNLKLSQISEMVGFHDVKYFSKVFKKQVGLSPKDYR 537 GIN +++ +RI KAK+LLQNP LK++ ISEMVGF + KYFS VFKKQ G+SPK++R Sbjct: 481 GINIPEHLNRIRISKAKILLQNPGLKMAAISEMVGFKNEKYFSLVFKKQEGISPKEFR 538 >B3K4S1.1 B3K4S1_9BACI Response regulator receiver Length = 538 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/545 (37%), Positives = 318/545 (58%), Gaps = 16/545 (2%) Query: 1 MKALIVDDEARVRKAVRLLVDWDAHQIGEVLEAGNGNEAIELIRKEKPALVIMDMMMESG 60 M+ LIVDDE VR+A+ LL DW+ H I E+ +A +G EA+ LI ++KP +V+ DM M Sbjct: 1 MRVLIVDDEQHVREAIGLLADWERHGITEIDQAADGEEAVRLIEEKKPQIVLTDMRMPRK 60 Query: 61 NGIELMSWVNEFAGNTKFIVVSGHNDFDFVRQTVRHGGIDYILKPIEPEMINNAVAKAVA 120 NG+EL++W++ + K +V+SG++DF++VR T+R GGIDYILKP++P+ +N A+AKAV Sbjct: 61 NGLELLTWLHATKPDIKVLVISGYDDFEYVRHTIRSGGIDYILKPVDPDSLNEALAKAVE 120 Query: 121 AWXXXXXXXXXXXXXXIRLNEIRPIYGEKLLSALIDDPINAEASLRRLWDDGVIPHTATV 180 W I +N++ P Y ++LLS L++ + E+ + +L +P T Sbjct: 121 TWRLEEEKRRHMTNQNIEMNQMTPFYMDRLLSDLVNGYGSRESVVSQLRKRMTLPETGMA 180 Query: 181 SRLILVQTDPGNNPLIKRFGGDSELLYYAIVNICNEFLHLQNKGIAFRYWGGPPEIAMIL 240 + +++ D + L+ +F LL + ++NICNE L+++GIAFR+ P EI ++ Sbjct: 181 CNVAVLRDDQFDEALLSKFRNRRHLLSFTLINICNEL--LKDRGIAFRHIDKPGEIILLC 238 Query: 241 WDVREPVAELINRINEGIYMTLQFRMHFGISSVGALPGGLPXXXXXXXXXXXXXXXXXXX 300 W+ R P +L++RIN+G + TL+ R HFG + GA P LP Sbjct: 239 WNPRLPFNDLLDRINDGFFSTLRRRSHFGAAEAGAFPQDLPKAYSTAVQALCSRNLLTGK 298 Query: 301 DYCHFSSSEPADTGSEPPVIFADVQEEWRMAVISGNPEVLSAAARHWTQELSRRGVVTPE 360 CH ++ + + +EE+++A +SG+ E + AA W QE+ R +V+PE Sbjct: 299 --CHIHRERAVESEGSRTLRLSSYEEEFKLAALSGSKERIEAATAEWLQEVRERDLVSPE 356 Query: 361 MLNSWKADALLFRSRLVREALGGQADNALAELERADALNPAPLPSGYSFS---LFAWRDW 417 L W ++ + + + DA LPS +S + W W Sbjct: 357 HLMRWNSEWDWIQYHWTENEVKSTQEPV------EDAEISQDLPSALPYSEDGMICWDRW 410 Query: 418 SFAVLQRL---SQELTARAVKERNPMAEIVKYIEQNYPSDLSLQEVAGKFYVSREYISRK 474 + RL S+ LT K+ + + +I +Y+EQ+Y ++SLQ++AGKF++SREYISRK Sbjct: 411 REQISGRLYAASRVLTQIHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRK 470 Query: 475 FKQEYGINFSDYIGSVRIEKAKLLLQNPNLKLSQISEMVGFHDVKYFSKVFKKQVGLSPK 534 FKQE+G+ SD++G +RIEKAK LL NP ++++QI+EMVG+ D KYFSKVFKK G +P Sbjct: 471 FKQEFGVTLSDFLGRIRIEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPN 530 Query: 535 DYRAQ 539 +YR + Sbjct: 531 EYRKK 535 >B1D7N5.1 B1D7N5_9BACL Two component transcriptional regulator, AraC family Length = 537 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 201/538 (37%), Positives = 299/538 (55%), Gaps = 4/538 (0%) Query: 1 MKALIVDDEARVRKAVRLLVDWDAHQIGEVLEAGNGNEAIELIRKEKPALVIMDMMMESG 60 MK LIVDDE VR+AV+LL+DW+ I E+ EA NG+ AIE++ +P +VI DM M + Sbjct: 1 MKILIVDDEQHVREAVKLLIDWEQLGIKEIYEADNGDSAIEMLGNMQPEIVITDMRMPNR 60 Query: 61 NGIELMSWVNEFAGNTKFIVVSGHNDFDFVRQTVRHGGIDYILKPIEPEMINNAVAKAVA 120 +G+EL++W+ E +K IV+SG++DF VR ++++GG DY+LKPI+PE + A+ KA Sbjct: 61 DGVELLAWMKEQGRKSKTIVISGYDDFHLVRSSMKYGGQDYLLKPIDPEQLTEALQKAKQ 120 Query: 121 AWXXXXXXXXXXXXXXIRLNEIRPIYGEKLLSALIDDP-INAEASLRRLWDDGVIPHTAT 179 +W I +N+I+P+Y +KL S +I + + ++ + + AT Sbjct: 121 SWEQEDQARRLDQQRSIEINQIKPVYRDKLFSTMISEAGAGGQVTVPAVLKEEFRLDRAT 180 Query: 180 VSRLILVQTDPGNNPLIKRFGGDSELLYYAIVNICNEFLHLQNKGIAFRYWGGPPEIAMI 239 ++I++ T + ++F G+ +LL + ++N+CNE L +N G AFRYW EI ++ Sbjct: 181 ECQVIILSTGMLEPQISRKFDGNRDLLTFCLINVCNEILKPKNSGFAFRYWNSEHEIIIL 240 Query: 240 LWDVREPVAELINRINEGIYMTLQFRMHFGISSVGALPGGLPXXXXXXXXXXXXXXXXXX 299 LWD +L+ +I EGI ++ R H+G+ A P GL Sbjct: 241 LWDRLAEWEDLLGQITEGIVKSIHGRFHYGVGHKQAFPTGLSLSYQEGRAALKQRNLLKD 300 Query: 300 XDYCHFSSSEPADTGSEPPVIFADVQEEWRMAVISGNPEVLSAAARHWTQELSRRGVVTP 359 Y H S + TG I A +E +R+AV SG + + A + + V+T Sbjct: 301 NSYIH-CSEQGFKTGIHSLSI-AAYEERFRLAVWSGKEKDIETAVDSFLENARLLPVITQ 358 Query: 360 EMLNSWKADALLFRSRLVREALGGQADNALAELERADALNPAPLPSGYSFSLFAWRDWSF 419 E + W+ + SR +E Q A AE L G SL R Sbjct: 359 EQIELWRFEYESMLSRWRQELAAKQGIQAGAEPSSGLPLYVLLDEQG-RLSLELCRRELL 417 Query: 420 AVLQRLSQELTARAVKERNPMAEIVKYIEQNYPSDLSLQEVAGKFYVSREYISRKFKQEY 479 L + A KE + M +I +Y+EQNY +++LQ+++ +FY+SREYISR+FKQE Sbjct: 418 NGLTAFAALTGAGGNKEHSIMRDIARYMEQNYNREVTLQDISERFYLSREYISRRFKQEM 477 Query: 480 GINFSDYIGSVRIEKAKLLLQNPNLKLSQISEMVGFHDVKYFSKVFKKQVGLSPKDYR 537 G N DY+G +R+EKAKLLLQNPNLK++QI+EMVG+ D KYFSKVFKK G SP YR Sbjct: 478 GENVFDYLGRIRVEKAKLLLQNPNLKIAQIAEMVGYDDDKYFSKVFKKFEGQSPNQYR 535 >A6CLV0.1 A6CLV0_9BACI AraC-type DNA-binding domain-containing protein Length = 525 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 168/540 (31%), Positives = 286/540 (52%), Gaps = 25/540 (4%) Query: 1 MKALIVDDEARVRKAVRLLVDWDAHQIGEVLEAGNGNEAIELIRKEKPALVIMDMMMESG 60 MKA+I+DDE VR+ + LL +W+ I +LEA +G +AIELI++ +P ++ DM M Sbjct: 1 MKAIIIDDEKHVREGLILLAEWEKFGIHTILEAEDGEQAIELIKEHRPEIIFTDMRMPRK 60 Query: 61 NGIELMSWVNEFAGNTKFIVVSGHNDFDFVRQTVRHGGIDYILKPIEPEMINNAVAKAVA 120 +GI L+ W++ ++K IVVSG++D++++R + + DYILKPIEPE++N A+ KAV+ Sbjct: 61 DGISLLKWLHSSELHSKTIVVSGYDDYEYMRNALYYKSFDYILKPIEPEVLNEALEKAVS 120 Query: 121 AWXXXXXXXXXXXXXXIRLNEIRPIYGEKLLSALIDDPINAEASLRRLWDDGVIPHTATV 180 W LNE++P+Y +++ S L +EA+ R+ ++ + T Sbjct: 121 EWKDQARSRKSQVEDSQVLNEVKPLYWDRMFSKLCLTGGLSEAAENRIRNEYGLSLTDKG 180 Query: 181 SRLILVQTDPGNNPLIKRFGGDSELLYYAIVNICNEFLHLQNKGIAFRYWGGPPEIAMIL 240 ++ L+ P ++K F + EL ++ + NI NE L N+G+ FR E+ +++ Sbjct: 181 VKIALIPIRPF---VVKAFQFEDELAFFTLSNIGNELLRRSNEGVCFRNINNDEELVILI 237 Query: 241 WDVREPVAELINRINEGIYMTLQFR--MHFGISSVGALPGGLPXXXXXXXXXXXXXXXXX 298 W+ + LI I+ IY + R M G S + G Sbjct: 238 WNA-DNAPLLIQDIHTAIYQYSKVRPIMALGKHSAD-VKGAYDSSHQVLRKHDLLSAKRV 295 Query: 299 XXDYCHFSSSEPADTGSEPPVIFADVQEEWRMAVISGNPEVLSAAARHWTQELSRRGVVT 358 + D + P + D + + A+ SG+ E + L + + Sbjct: 296 VTE---------EDILNTPLLHLLDYSNDLKWALRSGSMEQIDTQINSLFNLLEKDFTFS 346 Query: 359 PEMLNSWKADALLFRSRLVREALGGQADNALAELERADALNPAPLPSGYSFSLFAWRDWS 418 + + +W L ++ ++E + +N + ++R D +FSL ++ Sbjct: 347 LDQIATWDRQFELLKNNWLKEY---EINNEVTFVKREDYWKEDG-----TFSLPKFKKEK 398 Query: 419 FAVLQRLSQELT-ARAVKERNPMAEIVKYIEQNYPSDLSLQEVAGKFYVSREYISRKFKQ 477 + L + L+ A+ KE+N M I +Y+++NY D++LQE+A +FY+SREYISRKFKQ Sbjct: 399 ADEFKELVKILSDAKYQKEKNSMQRIEEYLQKNYQEDINLQEIADRFYLSREYISRKFKQ 458 Query: 478 EYGINFSDYIGSVRIEKAKLLLQNPNLKLSQISEMVGFHDVKYFSKVFKKQVGLSPKDYR 537 +Y +DY+ S+R+EKAK LL+NP LK+ +++ VG+ + KYFSKVFKK G++P +YR Sbjct: 459 DYDATITDYLTSIRMEKAKNLLKNPYLKIYEVAYGVGYQNEKYFSKVFKKHEGVTPNEYR 518 >A8RP07.1 A8RP07_9CLOT Putative uncharacterized protein Length = 541 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 155/584 (26%), Positives = 239/584 (40%), Gaps = 95/584 (16%) Query: 1 MKALIVDDEARVRKAVRLLVDWDAHQIGEVLEAGNGNEAIELIRKEKPALVIMDMMMESG 60 MK LI DDE V +A+RLLV W+ I ++ A NG EA+++I +E P +VI D++ME Sbjct: 1 MKVLISDDEHHVIQAIRLLVPWEEFGIDQIYTASNGMEALDIITREVPEIVITDIVMEDK 60 Query: 61 NGIELMSWVNEFAGNTKFIVVSGHNDFDFVRQTVRHGGIDYILKPIEPEMINNAVAKAVA 120 NGI++M ++ + K I VSGHNDF++VR + G +DY+LKP+E + + V KAV Sbjct: 61 NGIDIMDFIATRHPSIKVIAVSGHNDFEYVRTMLTKGCMDYLLKPLESATLISTVGKAVQ 120 Query: 121 AWXXXXXXXXXXXXXXIRLNEIRPIYGEKLLSALIDDPINAEASLRRLWDDGVIPHTATV 180 +W +++ + Y LL ++D A L D T Sbjct: 121 SWKDEHETNLRHRHLQEKVHSLSAFYSGVLLYKMLDSRCVETAYEELLQADASFSSVDTC 180 Query: 181 SRLILVQTDPGNNPLIKRFGGDSELLYYAIVNICNEFLHLQNKGIAF----------RYW 230 +++YY + +QN G A R Sbjct: 181 -----------------------KIIYYD-----TSYFPMQNAGFACLLKDFESQVRRSL 212 Query: 231 GG-----------PPEIAMILWDVREPVAELINRINEGIYMTLQFRMHFGISSVGALPGG 279 GG P EI L + A I + + +M + H GIS PG Sbjct: 213 GGQHGFILSNPDHPGEIMFFLLGAGDMTATSIIKAAQSFFMNTAYPFHLGISREHPFPGR 272 Query: 280 LPXXXXXXXXXXXXXXXXXXXDYCHF-----SSSEPADTGSEPPVIFADVQEEWRM---- 330 +C + SS+ A S + F E+ Sbjct: 273 FSDSYTQAKNAF----------FCFYGDIASSSTAMAALPSMEKLRFCPETEQLHQLEDQ 322 Query: 331 ---AVISGNPEVLSAAARHWTQELSRRGVVTPEMLNSWKADALLFRSRLVREALGGQADN 387 +++ G+ + +A W + + PE + L+ V E G Sbjct: 323 IFSSLLIGDRREIEGSAADWLAQ------ILPE------REIPLYLIHYVLETFHGLLKQ 370 Query: 388 ALAELER---ADALNPAPLP--------SGYSFSLFAWRDWSFAVLQRLSQELTARAVKE 436 +++ + A PA P Y FS A R F L + EL + Sbjct: 371 WASKIRKKNPAFTYMPAENPLVYEELMGENYLFSREALRQAMFTSLYCICDEL-KESRST 429 Query: 437 RNPMAEIVKYIEQNYPSDLSLQEVAGKFYVSREYISRKFKQEYGINFSDYIGSVRIEKAK 496 + M +I +Y+E NY E A FY++++Y+SRKF + +N Y+ +RI A+ Sbjct: 430 SDIMLQIAQYMELNYTKPFIQSEYAKLFYINKDYMSRKFTSTFHVNMLTYLNQIRIRHAR 489 Query: 497 LLLQNPNLKLSQISEMVGFHDVKYFSKVFKKQVGLSPKDYRAQI 540 LL + +LK+ I+ VGF D KYF+K FKK +P DYRA + Sbjct: 490 ELLSDFSLKIQDIAYAVGFKDEKYFAKQFKKLTNTTPGDYRAAL 533 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,056,621,276 Number of extensions: 122320308 Number of successful extensions: 371941 Number of sequences better than 1.0e-05: 7722 Number of HSP's gapped: 381498 Number of HSP's successfully gapped: 8397 Length of query: 542 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 401 Effective length of database: 1,732,333,088 Effective search space: 694665568288 Effective search space used: 694665568288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)