BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0022.p (361 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B0IYT6.1 B0IYT6_RHILT Spermidine/putrescine ABC transporter ATPa... 298 7e-79 B1HXH5.1 B1HXH5_LYSSC Ferric cations import ATP-binding protein ... 297 1e-78 A6M366.1 A6M366_CLOB8 Spermidine/putrescine ABC transporter ATPa... 295 5e-78 Q3IWT5.1 Q3IWT5_RHOS4 ABC opine/polyamine transporter, ATPase su... 295 6e-78 A1S0G9.1 A1S0G9_THEPD Spermidine/putrescine ABC transporter ATPa... 294 7e-78 >B0IYT6.1 B0IYT6_RHILT Spermidine/putrescine ABC transporter ATPase subunit Length = 362 Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 159/336 (47%), Positives = 218/336 (64%), Gaps = 11/336 (3%) Query: 1 MSQLIIE--NLVKNYGQKPVVNNLNITVESGEMLSLLGPSGCGKTTTLRMIAGMHDPTSG 58 MS + IE ++ K++G VV ++++ + GE +S+LGPSGCGKTTTL MIAG + P+ G Sbjct: 1 MSSIDIELVSVSKSFGAISVVKDISLQIPQGEFVSILGPSGCGKTTTLNMIAGFNQPSFG 60 Query: 59 SIRLDGRELTTIAPHKRNIGLVFQNYALFPHLSVFENVAFGLKRHGVQKSEIRGRVEAAL 118 IR+ GR + P +RNIGLVFQNYALFPH++V +NV FGLK V +SEI V +AL Sbjct: 61 DIRIRGRSQGRVPPERRNIGLVFQNYALFPHMTVADNVGFGLKMKSVARSEIESGVASAL 120 Query: 119 HSVRLNDFAERFPAQMSGGQQQRVALARTLVLKPPLVLFDEPLSNLDAKLRQALGIEIRV 178 SV L D+ R+P ++SGGQQQRVALAR + +P ++L DEPLSNLD KLR+A+ +E++ Sbjct: 121 RSVHLEDYGARYPRELSGGQQQRVALARAIAPRPSVLLLDEPLSNLDLKLREAMRLELKE 180 Query: 179 LQREYGFTGIFVTHDQEEAMVISDRIAVMNGGNIVQTGTPQQIYMHPADPFVADFVGESN 238 LQ++ G T ++VTHDQEEAM +SDRI VM G I QTG P IY HPA FVADF+G+SN Sbjct: 181 LQQQLGMTFVYVTHDQEEAMAMSDRIVVMWQGVIAQTGGPASIYRHPASSFVADFIGKSN 240 Query: 239 LFPITNIMESEGMWRFELTKGNPIS--AEKTGNGSAPTYVMVRPEAVSVRRKSLEPHPVS 296 + I E E L+ G+ IS A++ N + +RPE ++V + + Sbjct: 241 ILTIEGTSEQEATLDLHLS-GSAISLRAKRPPNRQQARFCCIRPEDIAVLNNTGD---AG 296 Query: 297 GHGLNTLAGEVAFINYSGSSYLIGVVIKSLDQQFII 332 G G+N L+G V + G S + V I D Q ++ Sbjct: 297 GCGVNRLSGTVRRVINLGPSLELAVEI---DPQVVL 329 >B1HXH5.1 B1HXH5_LYSSC Ferric cations import ATP-binding protein EC=3.6.3.30 Length = 366 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 161/364 (44%), Positives = 238/364 (65%), Gaps = 14/364 (3%) Query: 1 MSQLIIENLVKNYGQKPVVNNLNITVESGEMLSLLGPSGCGKTTTLRMIAGMHDPTSGSI 60 + ++ IEN+ K +GQ V ++++ +++GE + LGPSGCGKTTTLRMIAG + PT G I Sbjct: 11 LKRVTIENVSKQFGQLYGVKDVDLEIKAGEFFTFLGPSGCGKTTTLRMIAGFYYPTKGKI 70 Query: 61 RLDGRELTTIAPHKRNIGLVFQNYALFPHLSVFENVAFGLKRHGVQKSEIRGRVEAALHS 120 D +++T + P+KRNIG+VFQNYALFPH++V EN+AFGL+ K+EI+ +V+ Sbjct: 71 LFDEQDVTRLQPNKRNIGMVFQNYALFPHMTVDENIAFGLQVRKFSKAEIQHKVDRIRGQ 130 Query: 121 VRLNDFAERFPAQMSGGQQQRVALARTLVLKPPLVLFDEPLSNLDAKLRQALGIEIRVLQ 180 V+L+++ R ++SGGQQQRVALAR LV++P ++L DEPLSNLDAKLR+ IEI+ +Q Sbjct: 131 VKLSNYGNRKINELSGGQQQRVALARALVIEPDILLLDEPLSNLDAKLREETRIEIKRIQ 190 Query: 181 REYGFTGIFVTHDQEEAMVISDRIAVMNGGNIVQTGTPQQIYMHPADPFVADFVGESNLF 240 E G T I+VTHDQ EAM +SDRI VM G I Q GTPQ+IY P D FVA+F+GE+NL Sbjct: 191 SELGVTTIYVTHDQMEAMAMSDRIMVMENGYIKQIGTPQEIYHRPVDRFVANFIGETNLI 250 Query: 241 PIT-NIMESEGMWRFELTKGNPISAEKTGNGSAPTYVMVRPEAVSVRRKSLEPHPVSGHG 299 T ME E + + + G+ + K + A T+++ +S+R +S+ G G Sbjct: 251 EGTIEAMEDEEL-QVKTANGHIFTGRKQQSSPALTHMIGDKVFISIRPESIHL----GTG 305 Query: 300 LNTLAGEVAFINYSGSS--YLIGVVIKSLDQQFIIRLQNTRRELNLRVGEEAVVEWPVHE 357 NTL G++ F+ ++G S Y++ SL + L N+ ++ ++GE+ + H+ Sbjct: 306 DNTLTGKITFVEFTGISVNYIVDCNAFSLK----VMLINSYDQIK-KIGEDITITIS-HD 359 Query: 358 TLTF 361 +L F Sbjct: 360 SLYF 363 >A6M366.1 A6M366_CLOB8 Spermidine/putrescine ABC transporter ATPase subunit Length = 375 Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 157/356 (44%), Positives = 228/356 (64%), Gaps = 15/356 (4%) Query: 1 MSQLI--IENLVKNYGQKPVVNNLNITVESGEMLSLLGPSGCGKTTTLRMIAGMHDPTSG 58 MS++I I+N+ K YG VV +L I ++ GE L++LGPSGCGKTTTLRMIAG PTSG Sbjct: 1 MSEVIVKIDNINKKYGDNHVVRDLFIDIKKGEFLTMLGPSGCGKTTTLRMIAGFETPTSG 60 Query: 59 SIRLDGRELTTIAPHKRNIGLVFQNYALFPHLSVFENVAFGLKRHGVQKSEIRGRVEAAL 118 SI ++G E+ P++R + VFQNYALFPH+++++N+AFGL V K+EI+ RV L Sbjct: 61 SIYIEGEEVQNSEPYEREVNTVFQNYALFPHMTIYDNLAFGLSVKKVNKAEIKQRVTEIL 120 Query: 119 HSVRLNDFAERFPAQMSGGQQQRVALARTLVLKPPLVLFDEPLSNLDAKLRQALGIEIRV 178 V+L F R P Q+SGGQ+QRVA+ R L+ +P ++L DEPL LD KLR+ + E++ Sbjct: 121 ELVQLVGFENRKPDQLSGGQKQRVAIGRALINRPKVLLLDEPLGALDLKLRKQMQFELKR 180 Query: 179 LQREYGFTGIFVTHDQEEAMVISDRIAVMNGGNIVQTGTPQQIYMHPADPFVADFVGESN 238 LQ++ G T ++VTHDQEEA+ +SDRIA+M GG++ Q GTP++IY P FVADF+GESN Sbjct: 181 LQKKLGITFVYVTHDQEEALTMSDRIAIMYGGDLEQIGTPKEIYEKPKSKFVADFIGESN 240 Query: 239 LF-PITNIMESEGMWRFELTKGNPISAEKTGNGSAPTYVMVRPEAVSVRRKSLEPHPVSG 297 +F + N +E++ + R +L G+ I + + YV+VRPE + + ++++E Sbjct: 241 IFYGVANKLEND-LSRVKLENGDAIVLDSQVMDNEIIYVLVRPENIRLSKEAIEGF---- 295 Query: 298 HGLNTLAGEVAFINYSGSSYLIGVVIKSLDQQFIIRLQNTRRELNLRVGEEAVVEW 353 TL G+V Y G+ + I L I++ T + L +G E V W Sbjct: 296 ----TLVGKVKEHVYIGN---VNKTIIMLPTGMEIKMNTTPKVELLPIGSEVYVYW 344 >Q3IWT5.1 Q3IWT5_RHOS4 ABC opine/polyamine transporter, ATPase subunit Length = 372 Score = 295 bits (754), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 166/364 (45%), Positives = 230/364 (63%), Gaps = 20/364 (5%) Query: 2 SQLIIENLVKNYGQKPVVNNLNITVESGEMLSLLGPSGCGKTTTLRMIAGMHDPTSGSIR 61 L++ + +G V+ +L+++V GEM++ LGPSGCGKTTTLRMIAG+ DPT G I Sbjct: 20 DHLVLSEVGMTFGTLDVIPSLSLSVRRGEMVAFLGPSGCGKTTTLRMIAGLLDPTRGRIS 79 Query: 62 LDGRELTTIAPHKRNIGLVFQNYALFPHLSVFENVAFGLKRHGVQKSEIRGRVEAALHSV 121 + GRE+T + H R++G+VFQ+YALFPH++V +NVAFGL+ + K+EIR RVE AL V Sbjct: 80 VGGREITHLPVHDRDMGMVFQSYALFPHMTVSQNVAFGLEMRRMAKAEIRSRVERALAMV 139 Query: 122 RLNDFAERFPAQMSGGQQQRVALARTLVLKPPLVLFDEPLSNLDAKLRQALGIEIRVLQR 181 +L A R P +SGGQQQRVALAR LV++P ++L DEPLSNLDAKLR + ++IR LQ+ Sbjct: 140 QLGHLAGRKPKALSGGQQQRVALARALVVEPSILLLDEPLSNLDAKLRDEMRVQIRSLQQ 199 Query: 182 EYGFTGIFVTHDQEEAMVISDRIAVMNGGNIVQTGTPQQIYMHPADPFVADFVGESNLFP 241 + G T +FVTHDQ EA+ + DRI VM GG++ Q GTP +IY PA PFVA FVG +N Sbjct: 200 QSGITAVFVTHDQVEALSMCDRIVVMRGGHVEQFGTPNEIYERPATPFVASFVGRTNR-- 257 Query: 242 ITNIMESEGMWRFELTKGNPISAEKTGNGSAP---TYVMVRPEAVSVRRKSLEPHPVSGH 298 ++ ++ G L +G P++AE G P V+VRP +S+ R + E PV Sbjct: 258 LSGRVDPSGRL---LIEGRPVAAE----GRLPEGAVEVLVRPHRMSL-RAAAEDQPV--- 306 Query: 299 GLNTLAGEVAFINYSGSSYLIGVVIKSLDQQFIIRLQNTRRELNL-RVGEEAVVEWPVHE 357 GLN+L G + + G LI ++ + + Q TRR L G V W + Sbjct: 307 GLNSLPGVLTGATFVGD--LIQATVRIGGDEITVE-QLTRRRSGLPEPGSAVTVAWEAGD 363 Query: 358 TLTF 361 T+ + Sbjct: 364 TMVY 367 >A1S0G9.1 A1S0G9_THEPD Spermidine/putrescine ABC transporter ATPase subunit Length = 362 Score = 294 bits (753), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 154/320 (48%), Positives = 208/320 (65%), Gaps = 6/320 (1%) Query: 1 MSQLIIENLVKNYGQKPVVNNLNITVESGEMLSLLGPSGCGKTTTLRMIAGMHDPTSGSI 60 M L ENLVK YG+ V++++ +VE GEML LLGPSGCGKTTTLR+IAG+ P G + Sbjct: 1 MPYLSAENLVKRYGKVLAVDHVSFSVERGEMLGLLGPSGCGKTTTLRIIAGLTVPDEGRV 60 Query: 61 RLDGRELTTIAPHKRNIGLVFQNYALFPHLSVFENVAFGLKRHGVQKSEIRGRVEAALHS 120 ++G ++T P KR +G+VFQNYAL+PH++V++NVAF L+ G+ E++ RV+ AL Sbjct: 61 LVEGEDITNAPPEKRGMGMVFQNYALWPHMTVYDNVAFPLRARGMPADEVQRRVKEALEI 120 Query: 121 VRLNDFAERFPAQMSGGQQQRVALARTLVLKPPLVLFDEPLSNLDAKLRQALGIEIRVLQ 180 VRL + +R+P Q+SGGQQQRVALAR L ++P ++L DEPLSNLDAKLR+ + E++ LQ Sbjct: 121 VRLYELKDRYPHQLSGGQQQRVALARALAVQPRVILLDEPLSNLDAKLREEMRFELKELQ 180 Query: 181 REYGFTGIFVTHDQEEAMVISDRIAVMNGGNIVQTGTPQQIYMHPADPFVADFVGESNLF 240 R+ G T ++VTHDQ EA+ +SDRIAVM G IVQ GTP++IY PA+ FVADF+G+ N Sbjct: 181 RKLGVTAVYVTHDQAEALALSDRIAVMKDGRIVQIGTPREIYEEPANAFVADFIGKINFL 240 Query: 241 P--ITNIMESEGMWRFELTKGNPISA-EKTGNGSAPTYVMVRPEAVSVRRKSLEPHPVSG 297 I + EG + G + A K + AP V VRP + +R P V Sbjct: 241 EGRIEEFL-GEGYVLVRVGDGLYVKAYTKRVHEKAPVIVGVRPGYIELR--GTRPEKVDE 297 Query: 298 HGLNTLAGEVAFINYSGSSY 317 +N G V Y G Y Sbjct: 298 SRVNVFEGVVVRKTYLGDVY 317 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,087,384,414 Number of extensions: 85911550 Number of successful extensions: 556423 Number of sequences better than 1.0e-05: 99996 Number of HSP's gapped: 412216 Number of HSP's successfully gapped: 109084 Length of query: 361 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 224 Effective length of database: 1,770,017,148 Effective search space: 396483841152 Effective search space used: 396483841152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)