BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0021.p (241 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZKF3.1 C0ZKF3_BREBN ABC transporter permease protein 129 3e-28 C4CMC5.1 C4CMC5_9CHLR ABC-type spermidine/putrescine transport s... 127 7e-28 C4WR25.1 C4WR25_9RHIZ Binding-protein-dependent transport system... 127 1e-27 A6X6J9.1 A6X6J9_OCHA4 Binding-protein-dependent transport system... 125 4e-27 A4XZI1.1 A4XZI1_PSEMY Binding-protein-dependent transport system... 120 8e-26 >C0ZKF3.1 C0ZKF3_BREBN ABC transporter permease protein Length = 266 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 110/216 (50%) Query: 3 PLLVILISSFNSGEFLVFPPKGFSLRWYEEVLTGGRYTGPFLTSIKLAVLTTLFALPFGT 62 P LVI+ SSF + +L FPP+GFS +WYE +L + S+KLA +T + A GT Sbjct: 21 PFLVIIPSSFTAAGYLAFPPEGFSWQWYEMILDRPEFIDSLWISLKLATVTAILATFLGT 80 Query: 63 MIAYAIQRFEFRLKNALQGLFLSPLVIPTXXXXXXXXXXXXXXXXRMFFXXXXXXXXXXX 122 + A+A+ +++FR + L LSPL +P+ F Sbjct: 81 LAAFALSKYKFRGSGIINALMLSPLTVPSLIIGISALLFFTRIGIAGTFTGLLLAHMLIS 140 Query: 123 XPYVVRTMLAGFSRMERSVEEASIILGASPVKTFFLVTLPFARPXXXXXXXXXXXXXXDE 182 PYVVR +L G S + ++E+A +LGA P + F+ +TLP RP D Sbjct: 141 IPYVVRLVLTGLSSFDYTLEKAGYMLGAHPFRVFWDITLPLLRPAIVSGMIFSFLTSFDN 200 Query: 183 LVIALFLTGPGINTLPMTIYSDIQFNLSPSLAAVSS 218 + ++LFL P TLP+ I++ +Q L P +A++SS Sbjct: 201 VTVSLFLVAPDTTTLPLAIFTYMQETLDPLVASISS 236 >C4CMC5.1 C4CMC5_9CHLR ABC-type spermidine/putrescine transport system, permease component II Length = 263 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 112/217 (51%) Query: 1 MAPLLVILISSFNSGEFLVFPPKGFSLRWYEEVLTGGRYTGPFLTSIKLAVLTTLFALPF 60 +AP+ +I+ SF+S +FL FPP GFSL+WY E+ TG +T +TS+++ VLT+L A Sbjct: 20 VAPISIIVPVSFSSSQFLQFPPPGFSLQWYREIFTGPNWTDSIITSVQVGVLTSLLATTL 79 Query: 61 GTMIAYAIQRFEFRLKNALQGLFLSPLVIPTXXXXXXXXXXXXXXXXRMFFXXXXXXXXX 120 G + ++ I R +FR K AL LSP+++PT Sbjct: 80 GVLASFGIVRGDFRGKQALYTFLLSPMIVPTIILAISIYFLYARMRLVGSLLGLTLAHTV 139 Query: 121 XXXPYVVRTMLAGFSRMERSVEEASIILGASPVKTFFLVTLPFARPXXXXXXXXXXXXXX 180 P VV + A + ++E A+ LGA+ TFF VT P RP Sbjct: 140 LALPLVVVIVSAALRGFDVTLERAARSLGANEWTTFFHVTFPLLRPAIVSAAFFAFLTSF 199 Query: 181 DELVIALFLTGPGINTLPMTIYSDIQFNLSPSLAAVS 217 DEL+IALF++G TLP ++ I+ +SP+++AVS Sbjct: 200 DELIIALFISGTSAVTLPKRMWDGIRLEISPAISAVS 236 >C4WR25.1 C4WR25_9RHIZ Binding-protein-dependent transport systems inner membrane component Length = 263 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 114/216 (52%) Query: 2 APLLVILISSFNSGEFLVFPPKGFSLRWYEEVLTGGRYTGPFLTSIKLAVLTTLFALPFG 61 AP+LV++ SF++ +L FPP+ + +RWY E+L F S+ +A + T+ +L G Sbjct: 22 APILVVVPLSFSNDNYLTFPPQSWGVRWYAEMLHHETLIQAFWISLGIASVVTVLSLLAG 81 Query: 62 TMIAYAIQRFEFRLKNALQGLFLSPLVIPTXXXXXXXXXXXXXXXXRMFFXXXXXXXXXX 121 AYAI+R++FR + A+ LF +PL++P+ F Sbjct: 82 IPAAYAIRRYQFRGREAVLNLFTAPLLLPSIVLGLAILLVFVRLELLGTFTGLVIAHLIV 141 Query: 122 XXPYVVRTMLAGFSRMERSVEEASIILGASPVKTFFLVTLPFARPXXXXXXXXXXXXXXD 181 PYV+R M+ FS + SVEEA+ +LGASP F +TLP P D Sbjct: 142 TTPYVIRIMITAFSTLPPSVEEAATMLGASPFTVFRRITLPLMMPGLVASAALSFLLSFD 201 Query: 182 ELVIALFLTGPGINTLPMTIYSDIQFNLSPSLAAVS 217 E+VI+LF+TGP + TLP+ I++ ++ P A++S Sbjct: 202 EVVISLFITGPRMTTLPVEIFNYVESRTDPMTASIS 237 >A6X6J9.1 A6X6J9_OCHA4 Binding-protein-dependent transport systems inner membrane component Length = 263 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 113/216 (52%) Query: 2 APLLVILISSFNSGEFLVFPPKGFSLRWYEEVLTGGRYTGPFLTSIKLAVLTTLFALPFG 61 AP+LV++ SF++ +L FPP+ + +RWY E+L F S+ +A + T+ +L G Sbjct: 22 APILVVVPLSFSNDNYLTFPPQSWGVRWYAEMLHHETLIQAFWISLGIASVVTVLSLLAG 81 Query: 62 TMIAYAIQRFEFRLKNALQGLFLSPLVIPTXXXXXXXXXXXXXXXXRMFFXXXXXXXXXX 121 AYAI+R++FR + A+ F +PL++P+ F Sbjct: 82 IPAAYAIRRYQFRGREAVLNFFTAPLLLPSIVLGLAILLVFVRLELLGTFTGLVIAHLIV 141 Query: 122 XXPYVVRTMLAGFSRMERSVEEASIILGASPVKTFFLVTLPFARPXXXXXXXXXXXXXXD 181 PYV+R M+ FS + SVEEA+ +LGASP F +TLP P D Sbjct: 142 TTPYVIRIMITAFSTLPPSVEEAATMLGASPFTVFRRITLPLMMPGLVASAALSFLLSFD 201 Query: 182 ELVIALFLTGPGINTLPMTIYSDIQFNLSPSLAAVS 217 E+VI+LF+TGP + TLP+ I++ ++ P A++S Sbjct: 202 EVVISLFITGPRMTTLPVEIFNYVESRTDPMTASIS 237 >A4XZI1.1 A4XZI1_PSEMY Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 108/216 (50%) Query: 3 PLLVILISSFNSGEFLVFPPKGFSLRWYEEVLTGGRYTGPFLTSIKLAVLTTLFALPFGT 62 P+LVI+ SFNSG FLV+P +GFSLRWYE+ + S+ +A TL A+ FGT Sbjct: 31 PVLVIVPLSFNSGTFLVYPLQGFSLRWYEDFFMSADWMRSLKNSLIIAPAATLLAMVFGT 90 Query: 63 MIAYAIQRFEFRLKNALQGLFLSPLVIPTXXXXXXXXXXXXXXXXRMFFXXXXXXXXXXX 122 + A + R EFR K + L +SP+++P + Sbjct: 91 LAAIGLTRGEFRGKALVMSLLISPMIVPVVIIGVASYLFFAPLGMGNSYISLILVHAVLG 150 Query: 123 XPYVVRTMLAGFSRMERSVEEASIILGASPVKTFFLVTLPFARPXXXXXXXXXXXXXXDE 182 P+V+ T+ A ++ A+ LGASP+ TF VTLP P DE Sbjct: 151 VPFVIITVSATLQGFNHNLVRAAASLGASPLTTFRRVTLPLIAPGVISGALFAFATSFDE 210 Query: 183 LVIALFLTGPGINTLPMTIYSDIQFNLSPSLAAVSS 218 +V+ LFL GP TLP ++S I+ NLSP++AA ++ Sbjct: 211 VVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAAT 246 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 984,435,103 Number of extensions: 29739256 Number of successful extensions: 100876 Number of sequences better than 1.0e-05: 1871 Number of HSP's gapped: 99711 Number of HSP's successfully gapped: 1930 Length of query: 241 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 109 Effective length of database: 1,817,122,223 Effective search space: 198066322307 Effective search space used: 198066322307 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)