BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0020.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1BC65.1 A1BC65_PARDP Binding-protein-dependent transport system... 197 8e-49 C4CKT5.1 C4CKT5_9CHLR ABC-type spermidine/putrescine transport s... 189 3e-46 Q89Q86.1 Q89Q86_BRAJA ABC transporter permease protein 187 6e-46 A4ITB4.1 A4ITB4_GEOTN ABC transporter (Permease) 186 2e-45 Q1M4T8.1 Q1M4T8_RHIL3 Putative permease component of ABC transpo... 185 3e-45 >A1BC65.1 A1BC65_PARDP Binding-protein-dependent transport systems inner membrane component Length = 283 Score = 197 bits (501), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 157/243 (64%), Gaps = 1/243 (0%) Query: 34 SFYQTDSSGGMEA-AFVWQQYGRFFTDPFYLQMLWRSVYIGVAVSFICLILGYCLAYGVS 92 SF + GM A +F W+ Y R TD +Y +++ R++ +G+ V+ +CL+ GY +AY + Sbjct: 33 SFQEYQPGQGMVAGSFTWENYLRIATDGYYREVVLRTLGLGLGVTVLCLLTGYPVAYLIV 92 Query: 93 RAQPKHHFXXXXXXXXXXXTSAVIRNFGWIIILGRKGILNQFLLGIGLIQEPLELMYTPA 152 R P+ + V+R+FGWI++L +G++N LL +GLI+ PL+LM+ Sbjct: 93 RGHPRWRLPLTLLVIFPLMLNLVVRSFGWIVLLTNRGVVNNLLLDLGLIERPLKLMFNMT 152 Query: 153 GVIIALVHVMLPYMVLVLYSVLEGMDRNLESAAANLGASKTKVFWFVTLPLSKQGIIAGT 212 G++I L H+ LP+MVL+L + L+ + R++E+AAA LG+S+T VFW VTLPL+ GII G+ Sbjct: 153 GLLIGLTHIYLPFMVLMLVAALQNVPRDVEAAAATLGSSRTHVFWSVTLPLTAPGIIGGS 212 Query: 213 LLVFSITLSFFVTPSLIGGAKVKLMATEIYNQTINLLNWPYASAMGVILLLTMLGVTSLY 272 +LVF +T+S VTP ++GG ++MAT IY++ + LL+WP SA+ L + L + + Sbjct: 213 ILVFVLTISALVTPRMLGGPTYQVMATLIYDEYMQLLDWPSGSALSFALAASTLVIIWIS 272 Query: 273 RRM 275 RM Sbjct: 273 SRM 275 >C4CKT5.1 C4CKT5_9CHLR ABC-type spermidine/putrescine transport system, permease component I Length = 304 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 8/247 (3%) Query: 34 SFYQTDSSGGMEAAFVWQQYGRFFTDPFYLQMLWRSVYIGVAVSFICLILGYCLAYGVSR 93 SF+ D F + Y R F+ P YL+++ ++ I V+ ICL+L Y LAY +S Sbjct: 59 SFFDPD--------FTLEHYQRIFSVPVYLRVMQTTLSIAALVTVICLLLAYPLAYFLST 110 Query: 94 AQPKHHFXXXXXXXXXXXTSAVIRNFGWIIILGRKGILNQFLLGIGLIQEPLELMYTPAG 153 + TS ++R + W+++L ++G+LN++LL +G+IQEPL LMY G Sbjct: 111 LSARASRILIIFVLVPFWTSILVRTYAWMVLLQKQGVLNRWLLELGVIQEPLALMYNRVG 170 Query: 154 VIIALVHVMLPYMVLVLYSVLEGMDRNLESAAANLGASKTKVFWFVTLPLSKQGIIAGTL 213 V + +VHV+LP+MVL L++V+ G+DR+L AA NLGAS + F V LPLS G+ AG L Sbjct: 171 VTVGMVHVLLPFMVLPLFAVMRGIDRSLLRAAQNLGASPVQTFLRVFLPLSLPGVGAGVL 230 Query: 214 LVFSITLSFFVTPSLIGGAKVKLMATEIYNQTINLLNWPYASAMGVILLLTMLGVTSLYR 273 LVF ++L F++TP+L+GG K ++A I Q LNWP+ASA+ ++LL+ + + ++Y Sbjct: 231 LVFVLSLGFYITPALMGGRKDLMIAQLIEQQIRTQLNWPFASALALVLLVVTIVIMTIYN 290 Query: 274 RMLSGRK 280 R+L K Sbjct: 291 RLLGLDK 297 >Q89Q86.1 Q89Q86_BRAJA ABC transporter permease protein Length = 291 Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 150/240 (62%), Gaps = 4/240 (1%) Query: 45 EAAFVWQQYGRFFTDPFYLQMLWRSVYIGVAVSFICLILGYCLAYGVSRAQPKH-HFXXX 103 + AF + Y R DPFYL+++W ++ IG+ + + L +GY LA+ ++R + + H Sbjct: 49 KVAFTTRHYARMIDDPFYLEVIWTTIRIGLVTTLVALAIGYPLAHWMARIKSRTGHALLL 108 Query: 104 XXXXXXXXTSAVIRNFGWIIILGRKGILNQFLLGIGLIQEPLELMYTPAGVIIALVHVML 163 T V+R F W+ +L KG++NQ L+ +G+I +PL+LMYT G+++ LVH+ + Sbjct: 109 MAVLAPMLTGIVVRTFAWMTLLSDKGVVNQTLMSLGVISQPLKLMYTETGIVVGLVHIYV 168 Query: 164 PYMVLVLYSVLEGMDRNLESAAANLGASKTKVFWFVTLPLSKQGIIAGTLLVFSITLSFF 223 P+MVL L V+ +D LE AA NLGAS + F VTLPLS GI+AG+LLVF++ +S + Sbjct: 169 PFMVLTLTGVIGRIDERLEQAAENLGASPLRAFLEVTLPLSLPGILAGSLLVFALAISAY 228 Query: 224 VTPSLIGGAKVKLMATEIYNQTINLLNWPYASAMGVILLLTMLGVTSLYRRML---SGRK 280 VTP L+GG ++ + IY Q N +A+A+G++LL+ LG+ Y R L SG++ Sbjct: 229 VTPILLGGFQIMTLPILIYQQISANFNVGFAAALGIVLLMISLGLVVAYNRALGLVSGQR 288 >A4ITB4.1 A4ITB4_GEOTN ABC transporter (Permease) Length = 306 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 154/249 (61%) Query: 34 SFYQTDSSGGMEAAFVWQQYGRFFTDPFYLQMLWRSVYIGVAVSFICLILGYCLAYGVSR 93 SF D + G+ + + Y +F +DPFYL ++WR++ IG+ + + +I+ Y +A+ +SR Sbjct: 54 SFKTFDPNSGIGDKWTLENYVKFLSDPFYLGVIWRTIKIGLLTTLLTVIISYPVAFHISR 113 Query: 94 AQPKHHFXXXXXXXXXXXTSAVIRNFGWIIILGRKGILNQFLLGIGLIQEPLELMYTPAG 153 A K S VIR +GW+I+L G++N+ L+ +G I +PL L+YT Sbjct: 114 ASGKVKNYLTLIVLSPLLISMVIRCYGWVILLSNNGVVNRTLINLGWIDKPLTLLYTELS 173 Query: 154 VIIALVHVMLPYMVLVLYSVLEGMDRNLESAAANLGASKTKVFWFVTLPLSKQGIIAGTL 213 V+I +VHV+ PYMVL + LE +D ++ A+ +LGA + F+ + LPL+ G+ AG++ Sbjct: 174 VVIGMVHVLFPYMVLSIMGSLERIDPSIIRASQSLGAGLIRTFFSIILPLTLPGVFAGSV 233 Query: 214 LVFSITLSFFVTPSLIGGAKVKLMATEIYNQTINLLNWPYASAMGVILLLTMLGVTSLYR 273 +VFS+++S FVTP+++GG +VK+M+ Y Q +LNWPY SA+G +L+ +Y Sbjct: 234 MVFSLSVSSFVTPAILGGPQVKVMSYLTYEQVAVILNWPYGSAIGFVLIFMATVTIIVYS 293 Query: 274 RMLSGRKPG 282 R+L+ + G Sbjct: 294 RILARSEKG 302 >Q1M4T8.1 Q1M4T8_RHIL3 Putative permease component of ABC transporter Length = 285 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/228 (42%), Positives = 144/228 (63%) Query: 48 FVWQQYGRFFTDPFYLQMLWRSVYIGVAVSFICLILGYCLAYGVSRAQPKHHFXXXXXXX 107 F Y +FF+D FY+ + +++IG +F CLILGY +A+ ++R Sbjct: 51 FTTGNYSKFFSDIFYISQMVNTLWIGFVTTFACLILGYPVAWQLARGTSAIRSLGYGLVL 110 Query: 108 XXXXTSAVIRNFGWIIILGRKGILNQFLLGIGLIQEPLELMYTPAGVIIALVHVMLPYMV 167 VIR++GW I+LG G++N+ L G G+I PL LMY G++IALVHV LP+M+ Sbjct: 111 SPLLVGIVIRSYGWTILLGNNGLINRALAGWGVIDGPLPLMYNALGIVIALVHVFLPFMI 170 Query: 168 LVLYSVLEGMDRNLESAAANLGASKTKVFWFVTLPLSKQGIIAGTLLVFSITLSFFVTPS 227 L + S ++G+D +LESAA +LGASK K F +TLPLS GI AG +LVF ++LS +VTPS Sbjct: 171 LPIMSAIQGIDPSLESAARSLGASKFKAFRRITLPLSLPGIQAGCILVFVLSLSAYVTPS 230 Query: 228 LIGGAKVKLMATEIYNQTINLLNWPYASAMGVILLLTMLGVTSLYRRM 275 LIGG +VK MA + + I+ WP+ SA+ ++L +T V ++ R+ Sbjct: 231 LIGGLRVKTMAVTVVDALIDTFQWPFGSALALMLSVTGAIVVVIFGRL 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,490,585,119 Number of extensions: 54332770 Number of successful extensions: 236774 Number of sequences better than 1.0e-05: 6510 Number of HSP's gapped: 234879 Number of HSP's successfully gapped: 6561 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)