BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0019.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4ITB6.1 A4ITB6_GEOTN ABC transporter substrate-binding protein 200 2e-49 B6JH03.1 B6JH03_OLICO ABC transporter substrate-binding protein 187 8e-46 A8I319.1 A8I319_AZOC5 ABC transporter substrate binding protein 187 1e-45 A4YLL6.1 A4YLL6_BRASO Putative ABC transporter (Substrate bindin... 186 3e-45 A5ESC9.1 A5ESC9_BRASB Putative ABC transporter (Substrate bindin... 186 3e-45 >A4ITB6.1 A4ITB6_GEOTN ABC transporter substrate-binding protein Length = 363 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 116/317 (36%), Positives = 175/317 (55%), Gaps = 6/317 (1%) Query: 1 VVTSFGGAIEETQR-AYIKQFEEEYNAEVEVVTLYSADALAKIRAEKNNQTIDVVLFSGG 59 V+ ++GG+ E+ + I +FE+E+ +V+ +T S D L+K++A+K+N IDV G Sbjct: 44 VLAAYGGSYEKKMKETIIPKFEKEFGVKVKYITGSSIDTLSKLQAQKDNPQIDVAFLDDG 103 Query: 60 QEQIAAKEDLIMKLDPEQMENLDQLYPEARSAEGYGPTFGYEALGMIYNRDAIP----TP 115 + A L+ LD + + NL+ +Y A+ E G FG G+ YN+D P Sbjct: 104 PQAQAKAFGLLAPLDEKIVTNLNNVYDIAKDKENIGVGFGIVVTGLAYNKDYFAQNGWKP 163 Query: 116 PASWNDLWKEEYKGQVGLVDISNTYGNQFLVALAKMNGGGEDNIQPGLDAIKTLLPNAAA 175 SWNDL ++KG++ L ISNTYG L+ A NGG E NI+PG + +K + NA Sbjct: 164 LTSWNDLEDPKFKGKLVLPSISNTYGVHLLLMAAFANGGNEKNIEPGFEKLKKIAENAVT 223 Query: 176 IVKSSPEVGNLFAQDEAVIAPFDSGYAYTFGKQGIPINFAIPKEGAVGIYITAQVVKGSP 235 K++ +V N F Q + V + + S YT G PI F IP+EGA + TA VVK +P Sbjct: 224 FDKTA-DVSNYFLQGQTVASAWGSSRVYTLQDSGFPIEFVIPREGAPALMTTANVVKNAP 282 Query: 236 NPELARKYIDFLLRPEIQKLTAEGGGYSPTNSQTELSDDLKGILPNGEDTFNGLIHLDLA 295 N ELA+K+++F+L E+QK A P N +L D+ + GE+ LI +D Sbjct: 283 NAELAQKFVNFILSEEVQKEFAHSLFDGPVNKNVKLDGDIAKKVVYGEEQVKKLIKVDWE 342 Query: 296 QVNNNKADWMEKWSKLI 312 VN +A+W E+ +K I Sbjct: 343 YVNQKRAEWTERANKEI 359 >B6JH03.1 B6JH03_OLICO ABC transporter substrate-binding protein Length = 362 Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 159/317 (50%), Gaps = 5/317 (1%) Query: 1 VVTSFGGAIEET-QRAYIKQFEEEYNAEVEVVTLYSADALAKIRAEKNNQTIDVVLFSGG 59 V FGG+++++ Q I FE++Y +V VT S LAK++A++N+ IDV+ + Sbjct: 43 VFAGFGGSLQKSLQATVIPAFEKKYGVKVVYVTGTSNQILAKVKAQRNSPQIDVIWANDT 102 Query: 60 QEQIAAKEDLIMKLDPEQMENLDQLYPEARSAEGYGPTFGYEALGMIYNRDAIP----TP 115 E L KLDP ++ NL QLY A+ +G G G +ALG+ YN P Sbjct: 103 THYQGKAEKLYAKLDPAKVPNLSQLYDFAKDRDGIGIVMGVQALGIEYNTKVFKEKGWAP 162 Query: 116 PASWNDLWKEEYKGQVGLVDISNTYGNQFLVALAKMNGGGEDNIQPGLDAIKTLLPNAAA 175 P SW DLW +YKG V ++ Y N +A MNGG N++P + +K L PN A Sbjct: 163 PTSWADLWDPKYKGHVVFYNMPIGYTNLLFAKIADMNGGSVTNLEPAWNKMKELQPNVLA 222 Query: 176 IVKSSPEVGNLFAQDEAVIAPFDSGYAYTFGKQGIPINFAIPKEGAVGIYITAQVVKGSP 235 V +V LF A I S + F G P+ +PKEG + +V +P Sbjct: 223 FVDPPAQVDALFGTGSAWIGFNGSARVHDFAGTGAPVAMVLPKEGGILYPQQFDIVANAP 282 Query: 236 NPELARKYIDFLLRPEIQKLTAEGGGYSPTNSQTELSDDLKGILPNGEDTFNGLIHLDLA 295 +P+LA+K+IDF + E QK+ AE P N +L D +P GE L++LD+ Sbjct: 283 HPDLAQKFIDFTISAEAQKMIAESLLLGPVNKTVKLDDAAAAKVPYGEKNVTALLNLDIG 342 Query: 296 QVNNNKADWMEKWSKLI 312 +N N +W+ ++ Sbjct: 343 PINQNLQSLTARWTAMV 359 >A8I319.1 A8I319_AZOC5 ABC transporter substrate binding protein Length = 348 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 109/316 (34%), Positives = 171/316 (54%), Gaps = 6/316 (1%) Query: 1 VVTSFGGAIEETQRA-YIKQFEEEY-NAEVEVVTLYSADALAKIRAEKNNQTIDVVLFSG 58 V +F G+ EE +A + F + NA + + + S D +AK++A N IDV+L Sbjct: 33 VFATFTGSWEEAHKAVLVPAFRKMTDNAPIVLDPMLSVDQIAKVKAAAANPPIDVMLHDP 92 Query: 59 GQEQIAAKEDLIMKLDPEQMENLDQLYPEARSAEGYGPTFGYEALGMIYNRDAIPTPPAS 118 G IA E L+ + L EA+ G P F + +G+ YN + + TPP S Sbjct: 93 GPALIAIGEGLVEPYPVAKSAYYKDLISEAQVDTGPAPFF--QVVGLTYNPETVKTPPTS 150 Query: 119 WNDLWKEEYKGQVGLVDISNTYGNQFLVALAKMNGGGEDNIQPGLDAIKTLLPNAAAIVK 178 W DLWK E+KG+VG+ ++++T G FLV +A+M+GG E N++PG A++ L PN AA+ Sbjct: 151 WADLWKPEFKGRVGITNLNSTLGTGFLVEIARMHGGSEANVEPGFAALEKLKPNLAAVAA 210 Query: 179 SSPEVGNLFAQDEAVIAPFDSGYAYTFGKQGIPINFAIPKEGAVGIYITAQVVKGSPNPE 238 + + +LF Q + I+P + QG+P+ F PKEGA+ T +VK SPN E Sbjct: 211 NPGALASLFQQGQVDISPGNFNAIQILKAQGVPVEFVAPKEGAIAFKTTMHIVKNSPNQE 270 Query: 239 LARKYIDFLLRPEIQ-KLTAEGGGYSPTNSQTELSDDLKGILPNGEDTF-NGLIHLDLAQ 296 LA K I+ L PE+Q KL A PTNS+ ++ ++ +L D + D Sbjct: 271 LAFKLIEAALSPEVQAKLMAAPYLVVPTNSKVPMTGEIAKVLAKDADEMKKKFVFQDWKT 330 Query: 297 VNNNKADWMEKWSKLI 312 +N ++ W+E++++ I Sbjct: 331 INTQRSAWIERFNREI 346 >A4YLL6.1 A4YLL6_BRASO Putative ABC transporter (Substrate binding protein) Length = 348 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 109/319 (34%), Positives = 172/319 (53%), Gaps = 12/319 (3%) Query: 1 VVTSFGGAIEETQRAYIKQFEEEYNAEVEVVT--LYSADALAKIRAEKNNQTIDVVLFSG 58 V +F G+ EE +A + + N + +V + S D +AK+ A K N IDV+L Sbjct: 33 VFATFTGSWEEAHKAVLVPAFRKANGDAPIVLDPMLSVDQIAKVNAAKANPPIDVMLHDP 92 Query: 59 GQEQIAAKEDLIMKLDPEQMENLDQLYPEARSAEGYGPTFGYEALGMIYNRDAIPTPPAS 118 G +A +DL+ ++ L PEA+ A G P F + +G+ YN + + TPP S Sbjct: 93 GPALVAIGQDLVDAYPADKSTYFKDLIPEAQDAMGPAPFF--QVVGLTYNPETVKTPPTS 150 Query: 119 WNDLWKEEYKGQVGLVDISNTYGNQFLVALAKMNGGGEDNIQPGLDAIKTLLPNAAAIVK 178 W DLWK E+KG+VG+ ++++T G +LV +A+M GG E N+ G A++ L PN AA+ Sbjct: 151 WADLWKPEFKGKVGITNLNSTLGTGWLVEIARMRGGSEANVDEGFKALEELKPNLAAVAA 210 Query: 179 SSPEVGNLFAQDEAVIAPFDSGYAYTFGKQGIPINFAIPKEGAVGIYITAQVVKGSPNPE 238 + + LF Q + I+P + +G+P+ F PKEGA+ T +VK SPN E Sbjct: 211 NPGALATLFQQGQIDISPGNFNAIQILKARGVPVEFVAPKEGAIAFKTTIHIVKNSPNKE 270 Query: 239 LARKYIDFLLRPEIQKLTAEGGGY--SPTNSQTELSDDLKGILPNGEDTF---NGLIHLD 293 LA K I+ L PE+Q T Y PTN++ +S ++ +L +DT + D Sbjct: 271 LAFKLIEAALSPEVQT-TLMNSPYLIVPTNTKVAMSGEIAKVL--AKDTAELKKKFVFQD 327 Query: 294 LAQVNNNKADWMEKWSKLI 312 ++N +A W+EK+++ I Sbjct: 328 WKKINEQRASWIEKFNRDI 346 >A5ESC9.1 A5ESC9_BRASB Putative ABC transporter (Substrate binding protein) Length = 348 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 107/318 (33%), Positives = 172/318 (54%), Gaps = 10/318 (3%) Query: 1 VVTSFGGAIEETQRAYIKQFEEEYNAEVEVVT--LYSADALAKIRAEKNNQTIDVVLFSG 58 V +F G+ EE +A + + NA+ +V + S D +AK+ A K N IDV+L Sbjct: 33 VFATFTGSWEEAHKAVLVPAFRKANADAAIVLDPMLSVDQIAKVNAAKANPPIDVMLHDP 92 Query: 59 GQEQIAAKEDLIMKLDPEQMENLDQLYPEARSAEGYGPTFGYEALGMIYNRDAIPTPPAS 118 G +A +DL+ ++ L PEA+ A G P F + +G+ +N + + TPP S Sbjct: 93 GPALVAIGQDLVEPFPADKSAYFKDLIPEAQDAMGPAPFF--QVVGLTFNPETVKTPPTS 150 Query: 119 WNDLWKEEYKGQVGLVDISNTYGNQFLVALAKMNGGGEDNIQPGLDAIKTLLPNAAAIVK 178 W DLWK E+KG+VG+ ++++T G +LV +A+M GG E N+ G A++ L PN AA+ Sbjct: 151 WADLWKPEFKGKVGITNLNSTLGTGWLVEIARMRGGSEANVDEGFKALEELKPNLAAVAA 210 Query: 179 SSPEVGNLFAQDEAVIAPFDSGYAYTFGKQGIPINFAIPKEGAVGIYITAQVVKGSPNPE 238 + + LF Q + I+P + +G+P+ F PKEGA+ T +VK SPN E Sbjct: 211 NPGALATLFQQGQIDISPGNFNAIQILKARGVPVEFVAPKEGAIAFKTTIHIVKNSPNKE 270 Query: 239 LARKYIDFLLRPEIQK-LTAEGGGYSPTNSQTELSDDLKGILPNGEDTF---NGLIHLDL 294 LA K I+ L PE+Q L PTN++ ++ ++ +L +DT + D Sbjct: 271 LAFKLIEAALSPEVQTALMNPPYLIVPTNTKVAMTGEIAKVL--AKDTAELKKKFVFQDW 328 Query: 295 AQVNNNKADWMEKWSKLI 312 ++N +A W+EK+++ I Sbjct: 329 KKINEQRASWIEKFNRDI 346 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,067,288,177 Number of extensions: 93402651 Number of successful extensions: 189923 Number of sequences better than 1.0e-05: 1766 Number of HSP's gapped: 188078 Number of HSP's successfully gapped: 1766 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)