BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0016.p (221 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q181G5.1 Q181G5_CLOD6 GntR-family transcriptional regulator 126 1e-27 B6G0G1.1 B6G0G1_9CLOT Putative uncharacterized protein 124 7e-27 B9MNX3.1 B9MNX3_ANATD Transcriptional regulator, GntR family 112 2e-23 A4XHI6.1 A4XHI6_CALS8 Transcriptional regulator, GntR family 112 2e-23 A3DI27.1 A3DI27_CLOTH Transcriptional regulator, GntR family 107 8e-22 >Q181G5.1 Q181G5_CLOD6 GntR-family transcriptional regulator Length = 218 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 120/201 (59%), Gaps = 1/201 (0%) Query: 15 IAYDSILRDIKENQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVYPRKGAYV 74 + ++++ I E +L GQ ++E + A++L +SRTPVREAIR L +EG V + PRKGAYV Sbjct: 10 VVFENLREAILEGKLKPGQRLMEVQLAEQLGVSRTPVREAIRKLELEGLVVMLPRKGAYV 69 Query: 75 SVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSNFHQWKEY 134 + ++ +D+ + E+ ++EG+ AYLAA + S E + +L ++ + S+ + Sbjct: 70 ANMSLKDIMDVLEVRASLEGLAAYLAAERISDEDIKKLKDISEEFKKSTLESDVDALLKL 129 Query: 135 DIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQTRFVAGVNLE-KATEEHQFILDAIIAKD 193 D+EFH + + NK LI + L+ + Y+ + +++ + EEH+++LDAII D Sbjct: 130 DVEFHECIFKATNNKKLIQLINSLWEQVYRFRVTYMSAYDTSHNIVEEHKYLLDAIIKGD 189 Query: 194 SEKARHYTQQNWNRARNELVN 214 SE ++ Y ++ +A +++ Sbjct: 190 SELSKKYATEHIEKAEQFMID 210 >B6G0G1.1 B6G0G1_9CLOT Putative uncharacterized protein Length = 223 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 116/201 (57%), Gaps = 1/201 (0%) Query: 15 IAYDSILRDIKENQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVYPRKGAYV 74 + ++S+ + I E L GQ ++E + A++L +SRTPVREAIR L +EGFV + PRKGAYV Sbjct: 18 VVFESLRKAIVEGSLKPGQRLMEVQLAEQLGVSRTPVREAIRKLELEGFVIMLPRKGAYV 77 Query: 75 SVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSNFHQWKEY 134 + ++ +D+ + E+ A+EG+ A LAA + + V L E+ +N N + + Sbjct: 78 ADMSVKDIIDVLEVRSALEGLAANLAAERMDEKEVENLKEISESLNVAMEGGNLDEILKK 137 Query: 135 DIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQTRFVAGVN-LEKATEEHQFILDAIIAKD 193 D+EFH+ + NK L + L+ + Y+ + +++ N + EEH ++DAI++ D Sbjct: 138 DVEFHQCIFEAAGNKKLTQMINSLWEQVYRFRAGYMSDKNAMIGIKEEHAHLIDAIVSGD 197 Query: 194 SEKARHYTQQNWNRARNELVN 214 E+A + + RA +++ Sbjct: 198 GERASKCAKNHIERAEQYMID 218 >B9MNX3.1 B9MNX3_ANATD Transcriptional regulator, GntR family Length = 231 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 117/204 (57%), Gaps = 9/204 (4%) Query: 17 YDSILRDIKE----NQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVYPRKGA 72 Y+ I IKE L G P++E + A++L +SRTP+REA+R L +EG V P KGA Sbjct: 17 YEKIFEVIKEKILMGILKPGDPLVEVKLAEELGVSRTPIREALRQLELEGLVYSIPHKGA 76 Query: 73 YVSVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSNFHQWK 132 +V+ +TA+D+++ Y + ++G+ A AA + + + ++LTE+I M + + Sbjct: 77 FVAGVTAQDIEDIYTIRMLLDGLAARWAAQKITKDEEDELTEIITLMELYTKKKDIPKVM 136 Query: 133 EYDIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQTR---FVAGVNLEKATEEHQFILDAI 189 + D +FH+ +++ +K L HV FH +Y I+ R F LE+A EEH+ I +AI Sbjct: 137 KTDSQFHQLIYKASKSKPL-EHVLSTFH-SYIIRARATSFETPGRLEEAMEEHKLIFEAI 194 Query: 190 IAKDSEKARHYTQQNWNRARNELV 213 +++D +KA Y + + A L+ Sbjct: 195 VSRDPDKAEEYMKLHVKNAAKNLI 218 >A4XHI6.1 A4XHI6_CALS8 Transcriptional regulator, GntR family Length = 231 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 116/204 (56%), Gaps = 9/204 (4%) Query: 17 YDSILRDIKE----NQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVYPRKGA 72 Y+ I IKE L G P++E + A++L +SRTP+REA+R L +EG V P KGA Sbjct: 17 YEKIFEIIKERILMGILKPGDPLVEVKLAEELGVSRTPIREALRQLELEGLVYSIPHKGA 76 Query: 73 YVSVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSNFHQWK 132 +V+ +TA+D+++ Y + ++G+ A AA + + + ++LTE+I M + + Sbjct: 77 FVAGVTAQDIEDIYTIRMLLDGLAARWAAQKITKDEEDELTEIITLMELYTRKKDIPKVM 136 Query: 133 EYDIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQTR---FVAGVNLEKATEEHQFILDAI 189 + D +FH+ +++ +K L HV FH +Y I+ R F LE+A EEH+ I +AI Sbjct: 137 KTDSQFHQLIYKASKSKPL-EHVLSTFH-SYIIRARATSFETPGRLEEAMEEHKLIFEAI 194 Query: 190 IAKDSEKARHYTQQNWNRARNELV 213 + KD +KA Y + + A L+ Sbjct: 195 VNKDPDKAEEYMKLHVKNAAKNLI 218 >A3DI27.1 A3DI27_CLOTH Transcriptional regulator, GntR family Length = 230 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 109/194 (56%), Gaps = 1/194 (0%) Query: 14 QIAYDSILRDIKENQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVYPRKGAY 73 ++ +D++ I +L G+ ++E + A+K+ +SRTPVREAIR L +EG V + PRKGA+ Sbjct: 18 EVIFDTLREAIIAGELKPGERLMEVKLAEKMGVSRTPVREAIRKLELEGLVEMLPRKGAH 77 Query: 74 VSVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSNFHQWKE 133 V+ L+ +D+ + E+ ++G+ LAA + + E + +L + + N N + Sbjct: 78 VAELSVKDIMDVLEVRATLDGLATALAAERITDEEIKELEHVHSQFLNYANKDNLQGSIK 137 Query: 134 YDIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQTRFVAG-VNLEKATEEHQFILDAIIAK 192 D+EFH ++R N+ LI L + + + ++ N + +EHQ+IL+AI + Sbjct: 138 KDVEFHELIYRASRNERLIQIANNLREQVQRFRVIYLKDYSNPRELIKEHQYILEAISTR 197 Query: 193 DSEKARHYTQQNWN 206 D A+ Y Q++ N Sbjct: 198 DKAAAQEYAQRHIN 211 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,232,582,230 Number of extensions: 46274190 Number of successful extensions: 147250 Number of sequences better than 1.0e-05: 3181 Number of HSP's gapped: 147180 Number of HSP's successfully gapped: 3181 Length of query: 221 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 90 Effective length of database: 1,826,543,238 Effective search space: 164388891420 Effective search space used: 164388891420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)