BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0013.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAP3.1 B3KAP3_9BACI Radical SAM domain protein 478 e-133 A3I421.1 A3I421_9BACI Putative uncharacterized protein 462 e-128 B1HTZ9.1 B1HTZ9_LYSSC Putative uncharacterized protein 459 e-127 C0Z4J4.1 C0Z4J4_BREBN Putative uncharacterized protein 457 e-127 B1DI20.1 B1DI20_9BACL Radical SAM domain protein 445 e-123 >B3KAP3.1 B3KAP3_9BACI Radical SAM domain protein Length = 291 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 224/295 (75%), Positives = 258/295 (87%), Gaps = 4/295 (1%) Query: 1 LKTFKKVYIEITSVCNLACSFCPPTERQKNFMKLDTFNTILDEIKPHSNHIYLHVKGEPL 60 +K FKKVYIEITS+CNLAC+FCPPTER+ NF+K++ F LDEIKPH+++IYLHVKGEPL Sbjct: 1 MKQFKKVYIEITSICNLACTFCPPTERKANFIKVEDFARRLDEIKPHTSYIYLHVKGEPL 60 Query: 61 LHPKLGELLDGXXXXAHAKGFRVNITTNGTLIHKAGPKLLGKPALRQMNFSLHSFDGHAG 120 LHPK+ ELLD +H KGF+VNITTNGTLI K KLLGKPALRQMNFSLHSFDGH G Sbjct: 61 LHPKIDELLD----ISHEKGFKVNITTNGTLIAKNRHKLLGKPALRQMNFSLHSFDGHVG 116 Query: 121 SENREGYVSEIISFVREVTAQGVIVSFRLWNLTEDNRTNLEKQRNRETLALLEEAFNLDF 180 S +REGY+ +I+SFVR+ VI SFRLWNLT+DN+TNLEK RNR+TL +LE+ FNLD+ Sbjct: 117 STDREGYLRDILSFVRDAEEHKVIFSFRLWNLTQDNQTNLEKSRNRQTLEILEQEFNLDY 176 Query: 181 NIEEKVVPGSGVKIAPRVYLNQDHEFRWPALSEPEDDGKGFCHALRSQAAVLVDGTVVPC 240 IEEKV PG GV++A RVYLNQD+EF+WP+LS PEDDGKGFCHALRSQAA+LVDGTVVPC Sbjct: 177 RIEEKVEPGGGVRVAERVYLNQDYEFQWPSLSAPEDDGKGFCHALRSQAAILVDGTVVPC 236 Query: 241 CLDGEGVINLGNLHEKPFSEIIEGERANNLFYGFSRREAVEELCRKCGYRQRFGT 295 CLDGEGVINLGNLH+KPFS+I++GERANNL GFSRREAVEELCRKCGYRQRFG Sbjct: 237 CLDGEGVINLGNLHQKPFSDIVDGERANNLVDGFSRREAVEELCRKCGYRQRFGA 291 >A3I421.1 A3I421_9BACI Putative uncharacterized protein Length = 291 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 215/294 (73%), Positives = 251/294 (85%), Gaps = 4/294 (1%) Query: 1 LKTFKKVYIEITSVCNLACSFCPPTERQKNFMKLDTFNTILDEIKPHSNHIYLHVKGEPL 60 +KTFKKVYIEITSVCNLACSFCPPTER K +K++ FN ILDEI+PH+ +IYLHVKGEPL Sbjct: 1 MKTFKKVYIEITSVCNLACSFCPPTERAKGLIKVEQFNKILDEIRPHTKYIYLHVKGEPL 60 Query: 61 LHPKLGELLDGXXXXAHAKGFRVNITTNGTLIHKAGPKLLGKPALRQMNFSLHSFDGHAG 120 LHP++ +LLD AHAKGF+VNITTNGTLI K K+LGKPALRQ+NFSLHSFDGH G Sbjct: 61 LHPRIDQLLDA----AHAKGFKVNITTNGTLIKKNREKILGKPALRQINFSLHSFDGHEG 116 Query: 121 SENREGYVSEIISFVREVTAQGVIVSFRLWNLTEDNRTNLEKQRNRETLALLEEAFNLDF 180 SENRE Y+ +I+ FVRE I+S+RLWNL +D+ +++ +RNRETL +LE +NLD+ Sbjct: 117 SENREKYLGDILDFVRESREYKTIISYRLWNLQQDHVSDVAARRNRETLEILENEYNLDY 176 Query: 181 NIEEKVVPGSGVKIAPRVYLNQDHEFRWPALSEPEDDGKGFCHALRSQAAVLVDGTVVPC 240 IEEKV PG GVKI +YLNQDHEFRWP+L EPED+GKGFCHALRSQAA+LVDGTVVPC Sbjct: 177 RIEEKVEPGKGVKIGSNIYLNQDHEFRWPSLLEPEDEGKGFCHALRSQAAILVDGTVVPC 236 Query: 241 CLDGEGVINLGNLHEKPFSEIIEGERANNLFYGFSRREAVEELCRKCGYRQRFG 294 CLDGEGVINLGN+HEK FSEI++GERANN+ GFSRREAVEELCRKCGYRQ+FG Sbjct: 237 CLDGEGVINLGNVHEKSFSEIVDGERANNIIDGFSRREAVEELCRKCGYRQKFG 290 >B1HTZ9.1 B1HTZ9_LYSSC Putative uncharacterized protein Length = 305 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/294 (73%), Positives = 250/294 (85%), Gaps = 4/294 (1%) Query: 1 LKTFKKVYIEITSVCNLACSFCPPTERQKNFMKLDTFNTILDEIKPHSNHIYLHVKGEPL 60 LKTFKKVYIEITSVCNLACSFCPPT R K +K++ FN ILDEI+PH+ +IYLHVKGEPL Sbjct: 15 LKTFKKVYIEITSVCNLACSFCPPTARAKGLIKVEQFNKILDEIRPHTKYIYLHVKGEPL 74 Query: 61 LHPKLGELLDGXXXXAHAKGFRVNITTNGTLIHKAGPKLLGKPALRQMNFSLHSFDGHAG 120 LHP++ +LLD AHAKGF+VNITTNGTLI K K+LGKPALRQ+NFSLHSFDGH G Sbjct: 75 LHPRIDQLLDA----AHAKGFKVNITTNGTLIKKNREKILGKPALRQINFSLHSFDGHEG 130 Query: 121 SENREGYVSEIISFVREVTAQGVIVSFRLWNLTEDNRTNLEKQRNRETLALLEEAFNLDF 180 SENRE Y+ +I+ FVRE I+S+RLWNL +D+ +++ +RNRETL +LE +NLDF Sbjct: 131 SENREKYLGDILDFVRESREYKTIISYRLWNLQKDHVSDVAARRNRETLEILENEYNLDF 190 Query: 181 NIEEKVVPGSGVKIAPRVYLNQDHEFRWPALSEPEDDGKGFCHALRSQAAVLVDGTVVPC 240 IEEKV PG GVKI P +YLNQDHEFRWP+L EPED+GKGFCHALRSQAA+LVDGTVVPC Sbjct: 191 RIEEKVEPGKGVKIGPNIYLNQDHEFRWPSLLEPEDEGKGFCHALRSQAAILVDGTVVPC 250 Query: 241 CLDGEGVINLGNLHEKPFSEIIEGERANNLFYGFSRREAVEELCRKCGYRQRFG 294 CLDGEGVINLGN+HEK F+EI++GERA N+ GFSRREAVEELCRKCGYRQ+FG Sbjct: 251 CLDGEGVINLGNVHEKSFAEIVDGERATNIIDGFSRREAVEELCRKCGYRQKFG 304 >C0Z4J4.1 C0Z4J4_BREBN Putative uncharacterized protein Length = 291 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/295 (72%), Positives = 252/295 (85%), Gaps = 4/295 (1%) Query: 1 LKTFKKVYIEITSVCNLACSFCPPTERQKNFMKLDTFNTILDEIKPHSNHIYLHVKGEPL 60 +K FKKVYIEITSVCNLAC+FCPPTER K+F+K++ F LDEIKPH+++IYLHVKGEPL Sbjct: 1 MKNFKKVYIEITSVCNLACTFCPPTERGKSFIKVEDFAKRLDEIKPHTDYIYLHVKGEPL 60 Query: 61 LHPKLGELLDGXXXXAHAKGFRVNITTNGTLIHKAGPKLLGKPALRQMNFSLHSFDGHAG 120 LHPK+ ELLD +H KGF+VNITTNGTLI K KLLGKPALRQMNFSLHSFDGH G Sbjct: 61 LHPKIDELLD----ISHEKGFKVNITTNGTLIAKNRHKLLGKPALRQMNFSLHSFDGHIG 116 Query: 121 SENREGYVSEIISFVREVTAQGVIVSFRLWNLTEDNRTNLEKQRNRETLALLEEAFNLDF 180 S +REGY+ EI+SFVRE VI SFRLWNLT+DN TN++K RNR+TL ++E+ F LDF Sbjct: 117 STDREGYLREILSFVREAQEHQVIFSFRLWNLTQDNATNIQKSRNRQTLEVIEKEFGLDF 176 Query: 181 NIEEKVVPGSGVKIAPRVYLNQDHEFRWPALSEPEDDGKGFCHALRSQAAVLVDGTVVPC 240 IEEKVV GSGVKI RVYLNQD+EF+WP+L+ PEDDGKGFCH LR+QAA+L +GTVVPC Sbjct: 177 RIEEKVVAGSGVKIDDRVYLNQDYEFQWPSLTAPEDDGKGFCHGLRTQAAILENGTVVPC 236 Query: 241 CLDGEGVINLGNLHEKPFSEIIEGERANNLFYGFSRREAVEELCRKCGYRQRFGT 295 CLDGEGVINLGN+++ F++I++GERANNL GFSRREAVEELCR+CGYRQRFG Sbjct: 237 CLDGEGVINLGNINQTSFTDIVDGERANNLIEGFSRREAVEELCRRCGYRQRFGA 291 >B1DI20.1 B1DI20_9BACL Radical SAM domain protein Length = 292 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/295 (70%), Positives = 246/295 (83%), Gaps = 5/295 (1%) Query: 1 LKTFKKVYIEITSVCNLACSFCPPTERQKNFMKLDTFNTILDEIKPHSNHIYLHVKGEPL 60 +K FKK YIEITS+CNLACSFCPPTER K F+ ++ F LD+IKP +++IY H+KGEPL Sbjct: 1 MKRFKKFYIEITSICNLACSFCPPTERAKGFISIEDFTERLDQIKPFTDYIYFHLKGEPL 60 Query: 61 LHPKLGELLDGXXXXAHAKGFRVNITTNGTLIHKAGPKLLGKPALRQMNFSLHSFDGHAG 120 LHPK+ +LLD +H KGF+VNITTNGTL+ K KLL KPALRQMNFSLHSFDGHAG Sbjct: 61 LHPKIDQLLD----ISHEKGFKVNITTNGTLLQKNKDKLLSKPALRQMNFSLHSFDGHAG 116 Query: 121 SENREGYVSEIISFVREVTAQ-GVIVSFRLWNLTEDNRTNLEKQRNRETLALLEEAFNLD 179 S+++EGY+S ++SFVRE Q +I SFRLWNLT+DN TN E+QRNRE L+++E F LD Sbjct: 117 SKDKEGYISGVLSFVREAMEQTNMITSFRLWNLTQDNMTNAERQRNREILSMIENEFELD 176 Query: 180 FNIEEKVVPGSGVKIAPRVYLNQDHEFRWPALSEPEDDGKGFCHALRSQAAVLVDGTVVP 239 + IEEKV+PGSGVKIA RVYLNQD+EF WP L EDDGKGFC+ LR+QA +L+DGTVVP Sbjct: 177 YLIEEKVMPGSGVKIADRVYLNQDYEFEWPDLRAKEDDGKGFCYGLRNQAGILIDGTVVP 236 Query: 240 CCLDGEGVINLGNLHEKPFSEIIEGERANNLFYGFSRREAVEELCRKCGYRQRFG 294 CCLDGEGVINLGN++E+ FS+IIEGERA NL GFSRREAVEELCRKCGYRQRFG Sbjct: 237 CCLDGEGVINLGNMNEQRFSDIIEGERATNLLEGFSRREAVEELCRKCGYRQRFG 291 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,834,410,033 Number of extensions: 78475713 Number of successful extensions: 155978 Number of sequences better than 1.0e-05: 171 Number of HSP's gapped: 155963 Number of HSP's successfully gapped: 172 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)