BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0012.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9E2.1 B3K9E2_9BACI Oxidoreductase domain protein 526 e-148 C5D8I4.1 C5D8I4_9BACI Oxidoreductase domain protein 461 e-128 Q2B2W1.1 Q2B2W1_9BACI Putative uncharacterized protein 450 e-125 B4BMV1.1 B4BMV1_9BACI Oxidoreductase domain protein 437 e-120 A4IT32.1 A4IT32_GEOTN Predicted dehydrogenase 436 e-120 >B3K9E2.1 B3K9E2_9BACI Oxidoreductase domain protein Length = 332 Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust. Identities = 236/327 (72%), Positives = 280/327 (85%) Query: 1 MTIRFGVIGTNWITDRFIQAGLENEEFILTAVYSRTEEKGRDFAAKYAGASIYTNLEKMV 60 M IRF +IGTNWIT+RF+Q+ LE EEFIL AVYSRTEEKGR FAAKYA +YT+LE MV Sbjct: 1 MNIRFAIIGTNWITERFLQSALETEEFILAAVYSRTEEKGRAFAAKYADPKVYTDLEAMV 60 Query: 61 ASEEVDAVYIASPNSMHAEHALVCMNHGKHVICEKPAASNSAELRAMIEAARDNDVLFME 120 +E+DAVYIASPNS H + A++CMNHGKHV+CEKP ASN+ E+ AMIEAA++NDVL ME Sbjct: 61 QDDEIDAVYIASPNSYHVDQAILCMNHGKHVLCEKPMASNAVEVAAMIEAAKNNDVLLME 120 Query: 121 AMKSTFMPNFGVIQDNLYKLGQVRRYFAGYCQYSSRYDAYRQGTVLNAFNPAFSNGSLMD 180 A+KST MPNF ++DNLYKLG +RRYFA YCQYSSRYDA++QGTVLNAFNP +SNGSLMD Sbjct: 121 ALKSTLMPNFKTVRDNLYKLGPIRRYFASYCQYSSRYDAFKQGTVLNAFNPEYSNGSLMD 180 Query: 181 LGIYCLYPMVALFGKPESVRAVGLMLASGVDGEGSIVMRYPDMDAVVMHSKIADSYLPAE 240 LGIYCLYPMV LFGKP++V+A G ML+SGVDGEGS+++ YP+MDAV+MHSKI+DS P E Sbjct: 181 LGIYCLYPMVTLFGKPDTVKASGYMLSSGVDGEGSLLLSYPEMDAVIMHSKISDSLAPTE 240 Query: 241 IQGENGTMVIDKINQPYQVKIHYRDGTVEELTLPQVFEPMYYEVEEFIRLIRSGQRESSV 300 IQGENGTM+IDKINQPY VKI YRDGT+E +T Q E MYYE EFI LIR G+RESS+ Sbjct: 241 IQGENGTMIIDKINQPYDVKIRYRDGTIENVTQLQTHESMYYEAREFIDLIRCGERESSI 300 Query: 301 NSHANSLAVAEVMEEARAQIGLRYASD 327 N+HANSL AE+M+EAR+QIGLR+ +D Sbjct: 301 NTHANSLITAEIMQEARSQIGLRFPAD 327 >C5D8I4.1 C5D8I4_9BACI Oxidoreductase domain protein Length = 327 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 204/325 (62%), Positives = 268/325 (82%) Query: 3 IRFGVIGTNWITDRFIQAGLENEEFILTAVYSRTEEKGRDFAAKYAGASIYTNLEKMVAS 62 IRF IGTNWIT+ FI+A + E+F LTAVYSRTEEK ++FAAK +TNLE++ S Sbjct: 2 IRFATIGTNWITEAFIEAARKVEDFTLTAVYSRTEEKAKEFAAKTGAKQTFTNLEELAKS 61 Query: 63 EEVDAVYIASPNSMHAEHALVCMNHGKHVICEKPAASNSAELRAMIEAARDNDVLFMEAM 122 +++DAVYIASPNS+HAE A++ MNHGKHV+CEKP ASN+ E++AM++AAR NDV+ MEAM Sbjct: 62 KDIDAVYIASPNSLHAEQAILLMNHGKHVLCEKPMASNTKEVKAMVDAARRNDVVLMEAM 121 Query: 123 KSTFMPNFGVIQDNLYKLGQVRRYFAGYCQYSSRYDAYRQGTVLNAFNPAFSNGSLMDLG 182 K+T +PNF I+++L+K+G++RRYFA YCQYSSRYDAY+QGT+LNAFNPAFSNGSLMD+G Sbjct: 122 KTTMLPNFLTIREHLHKIGKIRRYFASYCQYSSRYDAYKQGTILNAFNPAFSNGSLMDIG 181 Query: 183 IYCLYPMVALFGKPESVRAVGLMLASGVDGEGSIVMRYPDMDAVVMHSKIADSYLPAEIQ 242 +YC+YPMV LFGKP ++A L L SGVDGEGSI+ Y DMDA+VM+SKI +SYLP+EIQ Sbjct: 182 VYCIYPMVVLFGKPHRLQANSLKLESGVDGEGSIIFDYGDMDAMVMYSKITNSYLPSEIQ 241 Query: 243 GENGTMVIDKINQPYQVKIHYRDGTVEELTLPQVFEPMYYEVEEFIRLIRSGQRESSVNS 302 GE G+++ID I+ P +V+I YRDG +E++T+PQ PMYYE +EFI+LI++G+RES +NS Sbjct: 242 GEEGSILIDAIHTPTKVEIRYRDGRIEDITVPQEQPPMYYEAKEFIKLIKNGKRESEINS 301 Query: 303 HANSLAVAEVMEEARAQIGLRYASD 327 H +SL +MEEAR Q G+ + +D Sbjct: 302 HEHSLLTIALMEEARKQTGIVFPAD 326 >Q2B2W1.1 Q2B2W1_9BACI Putative uncharacterized protein Length = 328 Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust. Identities = 203/325 (62%), Positives = 264/325 (81%) Query: 3 IRFGVIGTNWITDRFIQAGLENEEFILTAVYSRTEEKGRDFAAKYAGASIYTNLEKMVAS 62 +RFGV+GTNWIT+RF+ A + ++F LTAVYSRTEEK R+FA KY YT+LE+M AS Sbjct: 2 VRFGVVGTNWITERFLDAADQVQDFALTAVYSRTEEKAREFADKYGVKHTYTSLEEMAAS 61 Query: 63 EEVDAVYIASPNSMHAEHALVCMNHGKHVICEKPAASNSAELRAMIEAARDNDVLFMEAM 122 E+DAVYIASPNS+HAE +++ M HGKHV+CEKPAASN+AEL+ MIEA++ N V+ MEA+ Sbjct: 62 SEIDAVYIASPNSLHAEQSILMMEHGKHVLCEKPAASNAAELKLMIEASQRNKVVLMEAL 121 Query: 123 KSTFMPNFGVIQDNLYKLGQVRRYFAGYCQYSSRYDAYRQGTVLNAFNPAFSNGSLMDLG 182 KST MPNF +++NL K+G VRRYFA YCQYSSRYDAY++G +LNAF P FSNG+LMD+G Sbjct: 122 KSTLMPNFKAVRENLGKIGPVRRYFASYCQYSSRYDAYKEGRILNAFKPEFSNGALMDIG 181 Query: 183 IYCLYPMVALFGKPESVRAVGLMLASGVDGEGSIVMRYPDMDAVVMHSKIADSYLPAEIQ 242 IYC+YP+V LFGKP+ V+A G+ML SGVDGEGS+V++Y +MDAV+M+SKI DS LPAEIQ Sbjct: 182 IYCIYPLVVLFGKPDEVKAQGVMLDSGVDGEGSMVLKYKEMDAVIMYSKITDSQLPAEIQ 241 Query: 243 GENGTMVIDKINQPYQVKIHYRDGTVEELTLPQVFEPMYYEVEEFIRLIRSGQRESSVNS 302 GENG +VIDKI+ P Q +I YR G+ E +T Q MYYE EEF+ L++SG+ ES+ N+ Sbjct: 242 GENGNIVIDKIHTPEQAEIRYRGGSSESITREQKEASMYYEAEEFVGLVKSGKLESATNT 301 Query: 303 HANSLAVAEVMEEARAQIGLRYASD 327 +NSLAV E+++ R+Q+G+ Y +D Sbjct: 302 LSNSLAVMEILDSVRSQLGIVYPAD 326 >B4BMV1.1 B4BMV1_9BACI Oxidoreductase domain protein Length = 328 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 199/325 (61%), Positives = 255/325 (78%) Query: 3 IRFGVIGTNWITDRFIQAGLENEEFILTAVYSRTEEKGRDFAAKYAGASIYTNLEKMVAS 62 +RF IGTNWIT+ FI A + F L AVYSRT+E + FA K +T+L+++ S Sbjct: 2 VRFATIGTNWITEAFINAARLVDSFELAAVYSRTDETAKRFAEKVGAPRTFTDLQELAKS 61 Query: 63 EEVDAVYIASPNSMHAEHALVCMNHGKHVICEKPAASNSAELRAMIEAARDNDVLFMEAM 122 ++DAVYIASPN+ HAE A++ MNHGKHV+CEKP ASN+ E+ AMI AA+ N V+ MEAM Sbjct: 62 NDIDAVYIASPNAFHAEQAILLMNHGKHVLCEKPLASNAKEVEAMIAAAKRNGVVLMEAM 121 Query: 123 KSTFMPNFGVIQDNLYKLGQVRRYFAGYCQYSSRYDAYRQGTVLNAFNPAFSNGSLMDLG 182 KST MPNF VI+ +++KLG++RRY A YCQYSSRYDAY+QGTVLNAFNP FSNG+LMDLG Sbjct: 122 KSTLMPNFAVIRQHIHKLGRIRRYAANYCQYSSRYDAYKQGTVLNAFNPTFSNGALMDLG 181 Query: 183 IYCLYPMVALFGKPESVRAVGLMLASGVDGEGSIVMRYPDMDAVVMHSKIADSYLPAEIQ 242 +YCLYPMV LFGKP SV+A + L SGVDGEG+IV+ Y +MDAVV +SKI +S+LP+EIQ Sbjct: 182 VYCLYPMVTLFGKPRSVKAQSVKLESGVDGEGAIVLDYGNMDAVVFYSKITNSHLPSEIQ 241 Query: 243 GENGTMVIDKINQPYQVKIHYRDGTVEELTLPQVFEPMYYEVEEFIRLIRSGQRESSVNS 302 GE+G M+ID I+ P +++I YRDG VE++T+PQ PMYYE EEFIRLI SG+ ES++NS Sbjct: 242 GEDGNMIIDAIHTPAKIEIRYRDGRVEDITVPQDKPPMYYEAEEFIRLIESGKHESTINS 301 Query: 303 HANSLAVAEVMEEARAQIGLRYASD 327 H +SL E+M+EAR Q G+ + +D Sbjct: 302 HCHSLWTMEIMDEARRQTGIVFPAD 326 >A4IT32.1 A4IT32_GEOTN Predicted dehydrogenase Length = 328 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 199/325 (61%), Positives = 254/325 (78%) Query: 3 IRFGVIGTNWITDRFIQAGLENEEFILTAVYSRTEEKGRDFAAKYAGASIYTNLEKMVAS 62 +RF IGTNWIT+ FI A + F L AVYSRT+E + FA K +T+L+++ S Sbjct: 2 VRFATIGTNWITEAFINAARLVDSFELAAVYSRTDETAKRFAEKVGAPRTFTDLQELAKS 61 Query: 63 EEVDAVYIASPNSMHAEHALVCMNHGKHVICEKPAASNSAELRAMIEAARDNDVLFMEAM 122 +DAVYIASPN++HAE A++ MNHGKHV+CEKP ASN+ E+ AMI AA+ N V+ MEAM Sbjct: 62 NGIDAVYIASPNAVHAEQAILLMNHGKHVLCEKPLASNAKEVEAMIAAAKRNGVVLMEAM 121 Query: 123 KSTFMPNFGVIQDNLYKLGQVRRYFAGYCQYSSRYDAYRQGTVLNAFNPAFSNGSLMDLG 182 KST MPNF I+ +++KLG++RRY A YCQYSSRYDAY+QGTVLNAFNP FSNG+LMDLG Sbjct: 122 KSTLMPNFAAIRQHIHKLGRIRRYAANYCQYSSRYDAYKQGTVLNAFNPTFSNGALMDLG 181 Query: 183 IYCLYPMVALFGKPESVRAVGLMLASGVDGEGSIVMRYPDMDAVVMHSKIADSYLPAEIQ 242 +YCLYPMV LFGKP SV+A + L SGVDGEG+IV+ Y DMDAVV +SKI +S+LP+EIQ Sbjct: 182 VYCLYPMVTLFGKPRSVKAQSVKLESGVDGEGAIVLDYGDMDAVVFYSKITNSHLPSEIQ 241 Query: 243 GENGTMVIDKINQPYQVKIHYRDGTVEELTLPQVFEPMYYEVEEFIRLIRSGQRESSVNS 302 GE+G M+ID I+ P +++I YRDG VE++T+PQ PMYYE EEFIRLI SG+ ES++NS Sbjct: 242 GEDGNMIIDAIHTPAKIEIRYRDGRVEDITVPQDKPPMYYEAEEFIRLIESGKHESTINS 301 Query: 303 HANSLAVAEVMEEARAQIGLRYASD 327 H +SL E+M+EAR Q G+ + +D Sbjct: 302 HCHSLWTMEIMDEARRQTGIVFPAD 326 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,874,429,394 Number of extensions: 76750561 Number of successful extensions: 180568 Number of sequences better than 1.0e-05: 2888 Number of HSP's gapped: 179238 Number of HSP's successfully gapped: 2891 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)