BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0010.p (164 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K951.1 B3K951_9BACI Adenylate cyclase 209 7e-53 B1D4Y3.1 B1D4Y3_9BACL Adenylate cyclase 204 2e-51 A5Z484.1 A5Z484_9FIRM Putative uncharacterized protein 83 7e-15 B5GV70.1 B5GV70_STRCL Adenylate cyclase 82 2e-14 Q0FTQ2.1 Q0FTQ2_9RHOB Putative uncharacterized protein 79 1e-13 >B3K951.1 B3K951_9BACI Adenylate cyclase Length = 169 Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 98/162 (60%), Positives = 126/162 (77%) Query: 1 MAMEIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAIEDGQELRVRKITDLDSGEITY 60 MA+EIERK+L+ YP+ LIQEG + V+ I+QTYLA++ QELRVRKITDL SG + + Sbjct: 1 MAIEIERKYLMEAYPDELIQEGIIVVVKEQFIEQTYLALDGDQELRVRKITDLTSGRLEF 60 Query: 61 THTFKDGKGISRKEIEYSISEGLYNQMIEAVKAVPLVKTRITGIWNGTTVEIDLYTQLEL 120 THTFK G GI+R+E+EY+ISEGLY Q+++A A+PL K R+T W T +EID Y Q+ L Sbjct: 61 THTFKKGWGIAREEVEYAISEGLYGQVVKAHGAIPLTKRRVTARWGSTIIEIDDYAQISL 120 Query: 121 TVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSNKTVWKELQ 162 VLEVEF SLEAA+ FV P WFG+D+S DK+YSNK VW++LQ Sbjct: 121 LVLEVEFPSLEAADGFVPPAWFGQDISTDKQYSNKKVWRDLQ 162 >B1D4Y3.1 B1D4Y3_9BACL Adenylate cyclase Length = 162 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/164 (61%), Positives = 126/164 (76%), Gaps = 2/164 (1%) Query: 1 MAMEIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAIEDGQELRVRKITDLDSGEITY 60 MA+EIERKFLL E+L ++QV + I+QTYLA+E QELRVR+ITD+D+GE+ Y Sbjct: 1 MALEIERKFLLAVPYEQL--GDRIQVRSEQRIEQTYLALEADQELRVRRITDVDNGEVAY 58 Query: 61 THTFKDGKGISRKEIEYSISEGLYNQMIEAVKAVPLVKTRITGIWNGTTVEIDLYTQLEL 120 THTFK G GI R+E+EY I+EGLY Q+++A AV L K RIT W G +EID+Y Q++L Sbjct: 59 THTFKKGFGIKREEVEYEINEGLYEQVVKAFGAVALTKNRITAEWKGVQIEIDIYDQIQL 118 Query: 121 TVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSNKTVWKELQNK 164 TVLEVEFDS EAA SF AP WFG+D+S K+YSNKTVWK+LQ K Sbjct: 119 TVLEVEFDSEEAAHSFEAPEWFGQDISSSKEYSNKTVWKQLQRK 162 >A5Z484.1 A5Z484_9FIRM Putative uncharacterized protein Length = 153 Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 17/155 (10%) Query: 3 MEIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAIEDGQELRVRKITDLDSGEITYTH 62 MEIERK++ PE L Q H I+Q YL +R+RK + Y Sbjct: 1 MEIERKYIPKTLPENLAQ------YKHHKIEQAYL--NTAPVVRIRKQDN------EYFL 46 Query: 63 TFKDGKGISRKEIEYSISEGLYNQMIEAVKAVPLVKTRI-TGIWNGTTVEIDLYTQ--LE 119 T+K G ++R+E ++E YN ++ + KTR I NG T E+D++ Sbjct: 47 TYKGGGMMAREEYNLPLNEKSYNHLLTKADGNIITKTRYYIPIHNGLTAELDIFEGKFTN 106 Query: 120 LTVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSN 154 +T++EVEF S++ A SF P WFGKDV+ D ++ N Sbjct: 107 MTLVEVEFSSIDKANSFNPPEWFGKDVTHDGRFHN 141 >B5GV70.1 B5GV70_STRCL Adenylate cyclase Length = 154 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 16/163 (9%) Query: 1 MAMEIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAIEDGQELRVRKITDLDSGEITY 60 MA EIERKF++ + G V + ++ Q YLA +E+RVR+I D Y Sbjct: 1 MATEIERKFVVGDL-------GAVLRIPAVTVRQGYLARSTDEEVRVRQIGD------EY 47 Query: 61 THTFKDGKGISRKEIEYSISEGLYNQMIEAVKAVPLVKTRI-TGIWNGTTVEIDLY-TQL 118 T T K G G+ R E E I +N + A + + KTR + +D++ L Sbjct: 48 TLTVKKGNGLQRSEFEILIDASQFNALWPATEGSRIAKTRREVELPENRLAHVDVFEGHL 107 Query: 119 E-LTVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSNKTVWKE 160 E L +EVEF AA +F P WFG++V+ D++YSNK + E Sbjct: 108 EGLATVEVEFADTGAAGAFTPPAWFGREVTEDRRYSNKVLSSE 150 >Q0FTQ2.1 Q0FTQ2_9RHOB Putative uncharacterized protein Length = 157 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 15/157 (9%) Query: 3 MEIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAI-EDGQELRVRKITDLDSGEITYT 61 +EIERKFL+ E P + + I Q Y+ + D ++R+R+ G+ + Sbjct: 6 VEIERKFLVAELP-------SLDGVDSKKIRQGYVTVPSDSVQVRLRQ-----KGKKFFI 53 Query: 62 HTFKDGKGISRKEIEYSISEGLYNQMIEAVKAVPLVKTRITGIW-NGTTVEIDLYTQLEL 120 GK + R E E I ++++ A + KTR TG+ +G T E+DL+ +L Sbjct: 54 TVKGKGK-MMRSERESEIDAATFDRLWPATGDRCIAKTRWTGLLEDGRTFELDLFDDRDL 112 Query: 121 TVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSNKTV 157 ++EVEF S+E AE+FV P WFG+DV+ + YSN + Sbjct: 113 RLVEVEFQSVEEAEAFVPPAWFGEDVTGNPSYSNNVL 149 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 939,901,409 Number of extensions: 35282855 Number of successful extensions: 70238 Number of sequences better than 1.0e-05: 80 Number of HSP's gapped: 70266 Number of HSP's successfully gapped: 80 Length of query: 164 Length of database: 3,060,696,203 Length adjustment: 124 Effective length of query: 40 Effective length of database: 1,892,490,343 Effective search space: 75699613720 Effective search space used: 75699613720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 125 (52.8 bits)