BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0009.p
         (146 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1HQL4.1 B1HQL4_LYSSC Putative uncharacterized protein                 57   4e-07
A3I9K2.1 A3I9K2_9BACI Putative uncharacterized protein                 56   1e-06

>B1HQL4.1 B1HQL4_LYSSC Putative uncharacterized protein
          Length = 154

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 26  TSFEKRVSGRINLNEITSIEIIRSLPSTTDEVKVTVTDPAKIADIMNAFAGVKLMSSSIS 85
           T F   V+ R+++ EI SIEIIR+    +DE  +T+TD  ++  IM       L     +
Sbjct: 40  TDFSTEVTERLDVEEIKSIEIIRA----SDEKTITITDATEMNQIMQQLNEQPLKKVWFT 95

Query: 86  H-DFNRSYWISIIVGKSLRFGIRLDDQKYININDLARKDKYGSGSFKIINHYDMRSIDSL 144
             +F  +YWI++ +      G+RLDD +++ +     ++ Y    +K+ + +DM  I+ L
Sbjct: 96  KSNFTEAYWITLAINGDREVGLRLDDAEHLFV--YLYEENYMKD-YKLTSDFDMSFIEKL 152

Query: 145 F 145
           F
Sbjct: 153 F 153


>A3I9K2.1 A3I9K2_9BACI Putative uncharacterized protein
          Length = 154

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 26  TSFEKRVSGRINLNEITSIEIIRSLPSTTDEVKVTVTDPAKIADIMNAFAGVKLMSSSIS 85
           T F K V+ R+++  I SIEIIR+    +DE  +T+TD A++  IM       L     +
Sbjct: 40  TDFSKEVTERLDVEAIKSIEIIRA----SDEKTITITDEAEMNQIMQQLNEQPLKKVWFT 95

Query: 86  H-DFNRSYWISIIVGKSLRFGIRLDDQKYININDLARKDKYGSGSFKIINHYDMRSIDSL 144
             +F  +YWI++ +      G+RLDD +++ +     ++ Y    +K+ + +D   I+ L
Sbjct: 96  KSNFKEAYWITLSINGDREVGLRLDDAEHLFV--YLYEENYMKD-YKLTSDFDTSFIEQL 152

Query: 145 F 145
           F
Sbjct: 153 F 153


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.139    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 771,968,681
Number of extensions: 27464274
Number of successful extensions: 81998
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 81997
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 3,060,696,203
Length adjustment: 109
Effective length of query: 37
Effective length of database: 2,033,805,568
Effective search space: 75250806016
Effective search space used: 75250806016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)