BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0006.p (262 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8N7.1 C0Z8N7_BREBN ABC transporter permease protein 389 e-106 Q5WD19.1 Q5WD19_BACSK Spermidine/putrescine ABC transporter perm... 346 1e-93 B1BRM9.1 B1BRM9_CLOPE ABC transporter, permease protein 264 5e-69 Q8XKX1.1 Q8XKX1_CLOPE Probable ABC transporter 264 6e-69 Q0TR18.1 Q0TR18_CLOP1 ABC transporter, permease protein 263 1e-68 >C0Z8N7.1 C0Z8N7_BREBN ABC transporter permease protein Length = 262 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/262 (74%), Positives = 222/262 (84%) Query: 1 MKEGNRALSLYTLLVFIFLLGPLVIISITSFEPGTVLKFPPEGFSLRWYKNIFEVSAFME 60 M+E NR L+L+T LVF+FLLGPL+IIS TSFEPG+VLKFPPEGFSLRWY+NIF+V FM Sbjct: 1 MQEKNRGLALFTSLVFLFLLGPLIIISFTSFEPGSVLKFPPEGFSLRWYENIFDVEMFMT 60 Query: 61 TFRTSIVISXXXXXXXXXXXXXXXXXXSRYRFRGRDTLNAVFLSPVLIPGIVLGFTLLRY 120 TF+TS+ +S SR+ FRG+ LN VF+SPVLIPGIV+GF +L+Y Sbjct: 61 TFKTSMFVSLLGNLLALLLGIPAAYALSRFDFRGKGILNGVFISPVLIPGIVMGFAMLKY 120 Query: 121 LIVVYNLPIVAGLLIGHTVIMLPFIIRVIASSLENFDFAVEEAAQSLGATRLFTFFKVVL 180 +IVVYNLPI AGLL+GHTV+MLPFIIRVIASSL NFDFA+EEAA SLGA RL TFFKVVL Sbjct: 121 VIVVYNLPIYAGLLVGHTVLMLPFIIRVIASSLSNFDFAIEEAALSLGAGRLETFFKVVL 180 Query: 181 PNIRSGILAAVLIAFLESFNNVDISVFMTGPGISTLPIQMLTYVQNYFDPTIAAISVILM 240 PNIRSGI+AA+LIAFLESFNNVDISVFMTGPG+STLPIQMLTYV+N FDPTIAAISV+LM Sbjct: 181 PNIRSGIIAAILIAFLESFNNVDISVFMTGPGVSTLPIQMLTYVENNFDPTIAAISVLLM 240 Query: 241 VLTAALMFIIERLMGFAYFTKR 262 + TA LMFIIERLMG +YFTKR Sbjct: 241 IFTAILMFIIERLMGLSYFTKR 262 >Q5WD19.1 Q5WD19_BACSK Spermidine/putrescine ABC transporter permease Length = 263 Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 170/261 (65%), Positives = 205/261 (78%) Query: 2 KEGNRALSLYTLLVFIFLLGPLVIISITSFEPGTVLKFPPEGFSLRWYKNIFEVSAFMET 61 + + L + L+F+FLLGPLVIIS+ SFEP TVL+FPP GFSL WY NIF VSAFM+T Sbjct: 3 QSKHIGLGFVSFLIFLFLLGPLVIISVASFEPSTVLQFPPSGFSLEWYANIFAVSAFMDT 62 Query: 62 FRTSIVISXXXXXXXXXXXXXXXXXXSRYRFRGRDTLNAVFLSPVLIPGIVLGFTLLRYL 121 F+ S+++S SRY F G+ LN +F+SP+LIPG VLGFT LRYL Sbjct: 63 FKLSMLVSLLGNLCALLLGIPAAYALSRYEFPGKALLNVLFVSPILIPGTVLGFTFLRYL 122 Query: 122 IVVYNLPIVAGLLIGHTVIMLPFIIRVIASSLENFDFAVEEAAQSLGATRLFTFFKVVLP 181 IV Y LP+ L +GHT++MLPFIIRVIASS+ FDF++EEAA SLGA+R FFKV+LP Sbjct: 123 IVAYQLPLEVALFVGHTILMLPFIIRVIASSMATFDFSIEEAAMSLGASRFGAFFKVILP 182 Query: 182 NIRSGILAAVLIAFLESFNNVDISVFMTGPGISTLPIQMLTYVQNYFDPTIAAISVILMV 241 NI+SGI+AAVLIAFLESFNNVDISVF+TGPG+STLPIQMLTYV++YFDPT+AAISV+LM Sbjct: 183 NIKSGIIAAVLIAFLESFNNVDISVFLTGPGLSTLPIQMLTYVEHYFDPTVAAISVMLMA 242 Query: 242 LTAALMFIIERLMGFAYFTKR 262 LTA LMF IERL+G +YFTKR Sbjct: 243 LTAILMFAIERLVGLSYFTKR 263 >B1BRM9.1 B1BRM9_CLOPE ABC transporter, permease protein Length = 260 Score = 264 bits (675), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 126/259 (48%), Positives = 187/259 (72%), Gaps = 1/259 (0%) Query: 1 MKEGNRALSLYTLLVFIFLLGPLVIISITSFEPGTVLKFPPEGFSLRWYKNIFEVSAFME 60 MK+ ++ L+ + +LV+IFL PLVII++TS + FPP+GFSL+W+ +F+ AF++ Sbjct: 1 MKK-SKVLTTFVVLVYIFLFAPLVIIAMTSIGTENYIAFPPKGFSLQWFITVFKSEAFIK 59 Query: 61 TFRTSIVISXXXXXXXXXXXXXXXXXXSRYRFRGRDTLNAVFLSPVLIPGIVLGFTLLRY 120 + TS +IS SRY F+G+D L + F SP+++PGIV+GF+L ++ Sbjct: 60 SMGTSFLISTVSTLSALVIGMPAAYGLSRYNFKGKDILKSFFFSPLIVPGIVVGFSLFQF 119 Query: 121 LIVVYNLPIVAGLLIGHTVIMLPFIIRVIASSLENFDFAVEEAAQSLGATRLFTFFKVVL 180 L+V NL + A L IGHT+I++P+IIRV+ SSLE FD+++EEAA SLG + TFFKVVL Sbjct: 120 LLVKMNLSVYASLFIGHTLIIIPYIIRVVGSSLEGFDYSIEEAAMSLGCKKSQTFFKVVL 179 Query: 181 PNIRSGILAAVLIAFLESFNNVDISVFMTGPGISTLPIQMLTYVQNYFDPTIAAISVILM 240 PNI SG++AA ++AF+ SFNNV +S+F+TGPG+STLP M+ YV+ +DPT++A+SVILM Sbjct: 180 PNITSGVMAAFMLAFINSFNNVPVSIFLTGPGVSTLPTTMMNYVEYNYDPTVSALSVILM 239 Query: 241 VLTAALMFIIERLMGFAYF 259 +LT +M+I+E+ +G F Sbjct: 240 ILTIGIMYILEKTLGLNNF 258 >Q8XKX1.1 Q8XKX1_CLOPE Probable ABC transporter Length = 260 Score = 264 bits (675), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 126/259 (48%), Positives = 187/259 (72%), Gaps = 1/259 (0%) Query: 1 MKEGNRALSLYTLLVFIFLLGPLVIISITSFEPGTVLKFPPEGFSLRWYKNIFEVSAFME 60 MK+ ++ L+ + +LV+IFL PLVII++TS + FPP+GFSL+W+ +F+ AF++ Sbjct: 1 MKK-SKVLTTFVVLVYIFLFAPLVIIAMTSIGTENYIAFPPKGFSLQWFITVFKSEAFIK 59 Query: 61 TFRTSIVISXXXXXXXXXXXXXXXXXXSRYRFRGRDTLNAVFLSPVLIPGIVLGFTLLRY 120 + TS +IS SRY F+G+D L + F SP+++PGIV+GF+L ++ Sbjct: 60 SMGTSFLISTVSTLSALVIGMPAVYGLSRYNFKGKDILKSFFFSPLIVPGIVVGFSLFQF 119 Query: 121 LIVVYNLPIVAGLLIGHTVIMLPFIIRVIASSLENFDFAVEEAAQSLGATRLFTFFKVVL 180 L+V NL + A L IGHT+I++P+IIRV+ SSLE FD+++EEAA SLG + TFFKVVL Sbjct: 120 LLVKMNLSVYASLFIGHTLIIIPYIIRVVGSSLEGFDYSIEEAAMSLGCKKSQTFFKVVL 179 Query: 181 PNIRSGILAAVLIAFLESFNNVDISVFMTGPGISTLPIQMLTYVQNYFDPTIAAISVILM 240 PNI SG++AA ++AF+ SFNNV +S+F+TGPG+STLP M+ YV+ +DPT++A+SVILM Sbjct: 180 PNITSGVMAAFMLAFINSFNNVPVSIFLTGPGVSTLPTTMMNYVEYNYDPTVSALSVILM 239 Query: 241 VLTAALMFIIERLMGFAYF 259 +LT +M+I+E+ +G F Sbjct: 240 ILTIGIMYILEKTLGLNNF 258 >Q0TR18.1 Q0TR18_CLOP1 ABC transporter, permease protein Length = 260 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 125/259 (48%), Positives = 187/259 (72%), Gaps = 1/259 (0%) Query: 1 MKEGNRALSLYTLLVFIFLLGPLVIISITSFEPGTVLKFPPEGFSLRWYKNIFEVSAFME 60 MK+ ++ L+ + +LV+IFL PLVII++TS + FPP+GFSL+W+ +F+ +F++ Sbjct: 1 MKK-SKVLTTFVVLVYIFLFAPLVIIAMTSIGTENYIAFPPKGFSLQWFITVFKSESFIK 59 Query: 61 TFRTSIVISXXXXXXXXXXXXXXXXXXSRYRFRGRDTLNAVFLSPVLIPGIVLGFTLLRY 120 + TS +IS SRY F+G+D L + F SP+++PGIV+GF+L ++ Sbjct: 60 SMGTSFLISTVSTLSALVIGMPAAYGLSRYNFKGKDILKSFFFSPLIVPGIVVGFSLFQF 119 Query: 121 LIVVYNLPIVAGLLIGHTVIMLPFIIRVIASSLENFDFAVEEAAQSLGATRLFTFFKVVL 180 L+V NL + A L IGHT+I++P+IIRV+ SSLE FD+++EEAA SLG + TFFKVVL Sbjct: 120 LLVKMNLSVYASLFIGHTLIIIPYIIRVVGSSLEGFDYSIEEAAMSLGCKKSQTFFKVVL 179 Query: 181 PNIRSGILAAVLIAFLESFNNVDISVFMTGPGISTLPIQMLTYVQNYFDPTIAAISVILM 240 PNI SG++AA ++AF+ SFNNV +S+F+TGPG+STLP M+ YV+ +DPT++A+SVILM Sbjct: 180 PNITSGVMAAFMLAFINSFNNVPVSIFLTGPGVSTLPTTMMNYVEYNYDPTVSALSVILM 239 Query: 241 VLTAALMFIIERLMGFAYF 259 +LT +M+I+E+ +G F Sbjct: 240 ILTIGIMYILEKTLGLNNF 258 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.146 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,298,801,710 Number of extensions: 46871422 Number of successful extensions: 209828 Number of sequences better than 1.0e-05: 6472 Number of HSP's gapped: 208239 Number of HSP's successfully gapped: 6606 Length of query: 262 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 129 Effective length of database: 1,807,701,208 Effective search space: 233193455832 Effective search space used: 233193455832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)