BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0005.p (272 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8N8.1 C0Z8N8_BREBN ABC transporter permease protein 318 3e-85 Q5WD20.1 Q5WD20_BACSK Spermidine/putrescine ABC transporter perm... 278 3e-73 B9Y3T3.1 B9Y3T3_9FIRM Putative uncharacterized protein 219 3e-55 Q0TR17.1 Q0TR17_CLOP1 ABC transporter, permease protein 218 3e-55 B1REJ9.1 B1REJ9_CLOPE ABC transporter, permease protein 216 1e-54 >C0Z8N8.1 C0Z8N8_BREBN ABC transporter permease protein Length = 273 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 157/251 (62%), Positives = 188/251 (74%) Query: 22 IPITLTIASTFVQDGKLTLEGYLHFFRDGYFNRILLTTLRVSAVTTLVCMVLGYPVAYYI 81 IPI +TIASTF Q+G T++GYL F D YF +I+LTTL+VS VTT+ C+++G+P AYYI Sbjct: 23 IPIVMTIASTFYQEGSFTIQGYLQFLTDAYFLKIMLTTLQVSLVTTIACVLIGFPAAYYI 82 Query: 82 SRTSVRKKSVLLALSIFPLLTSPVVRSFSWMIILGKKGLVNSLLVNTGIIDKPLDILYTP 141 S+ RKK +LLAL+IFPLLTS VVRSFSWMIILGKKGL+NS L+ G+IDKPL+ILYTP Sbjct: 83 SKLGPRKKGILLALAIFPLLTSSVVRSFSWMIILGKKGLLNSSLLAIGLIDKPLEILYTP 142 Query: 142 TAMMIGLVHLFLPLIIITLLGVMENLDHELVRAARSLGASPFTAFRKITFPXXXXXXXXX 201 TAMMIGL+HLFLPLIIITL+GVMEN+D +L++AA SLGAS TAF K+ P Sbjct: 143 TAMMIGLIHLFLPLIIITLVGVMENIDPDLLKAAESLGASKLTAFWKVIVPLSVPGLIIG 202 Query: 202 XXXXXXXXXTAYTTPALLGGKERVVSTFLYQNAMTLNDWQXXXXXXXXXXXXTFVVVGLM 261 TAYTTPALLGGK+RV+STFLYQNA+TLNDW TFVV+ M Sbjct: 203 SILVFVGSLTAYTTPALLGGKQRVISTFLYQNAITLNDWHLASVIATIMIVITFVVIYFM 262 Query: 262 NAWANRLNPKG 272 N A +LNPKG Sbjct: 263 NKLATKLNPKG 273 >Q5WD20.1 Q5WD20_BACSK Spermidine/putrescine ABC transporter permease Length = 273 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 138/251 (54%), Positives = 174/251 (69%) Query: 22 IPITLTIASTFVQDGKLTLEGYLHFFRDGYFNRILLTTLRVSAVTTLVCMVLGYPVAYYI 81 IP+ LTI+STFV++G +L+GY F D YF IL TTL V+ +TT C++L +P AYYI Sbjct: 23 IPLVLTISSTFVENGSFSLDGYFRFLGDAYFLEILWTTLFVALLTTFCCVILAFPAAYYI 82 Query: 82 SRTSVRKKSVLLALSIFPLLTSPVVRSFSWMIILGKKGLVNSLLVNTGIIDKPLDILYTP 141 S+ + KK+++L L+IFPLL SPVVRSFSWMIILG+ GL+N L+ TG+I++PL ILYTP Sbjct: 83 SKLNGGKKAIMLMLAIFPLLVSPVVRSFSWMIILGRNGLLNEFLLATGLINEPLSILYTP 142 Query: 142 TAMMIGLVHLFLPLIIITLLGVMENLDHELVRAARSLGASPFTAFRKITFPXXXXXXXXX 201 A+ IGL+HLFLPL+I+TL+GVMEN+D +L AA SLGAS AF K+ P Sbjct: 143 AAVAIGLIHLFLPLMIVTLVGVMENIDADLFLAAESLGASKAKAFLKVMVPLCVPGLVIG 202 Query: 202 XXXXXXXXXTAYTTPALLGGKERVVSTFLYQNAMTLNDWQXXXXXXXXXXXXTFVVVGLM 261 TAYTTPALLGG++RV+STFLYQNA+TLNDW TFVV GL Sbjct: 203 STLVFVGSFTAYTTPALLGGQQRVISTFLYQNAITLNDWHAAAMIATIMIVITFVVTGLF 262 Query: 262 NAWANRLNPKG 272 A LNP+G Sbjct: 263 QKIAAILNPRG 273 >B9Y3T3.1 B9Y3T3_9FIRM Putative uncharacterized protein Length = 276 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 107/243 (44%), Positives = 161/243 (66%), Gaps = 1/243 (0%) Query: 31 TFVQDGKLTLEGYLHFFRDGYFNRILLTTLRVSAVTTLVCMVLGYPVAYYISRTSVRKKS 90 T + G +TL Y+ FF+D Y+ +I + TLR++ V TLVCM+LG P AY+ISR S + + Sbjct: 32 TVFEGGAVTLSRYIAFFQDPYYIKIFVRTLRIALVCTLVCMILGIPTAYFISRVSKKWRG 91 Query: 91 VLLALSIFPLLTSPVVRSFSWMIILGKKGLVNSLLVNTGIIDKPLDILYTPTAMMIGLVH 150 +L+++++FP+LT+ V+R+F+W+ ILGK G+VN +L ++D+PL +LYT ++++G ++ Sbjct: 92 ILMSVALFPMLTNSVIRAFAWINILGKNGIVNQILSALHLVDQPLSMLYTEFSVLVGTIY 151 Query: 151 LFLPLIIITLLGVMENLDHELVRAARSLGASPFTAFRKITFPXXXXXXXXXXXXXXXXXX 210 LFLPL+IITL+GVMEN+D++++ AA SLGAS +F K+ P Sbjct: 152 LFLPLMIITLVGVMENIDNDMMEAAESLGASRLLSFFKVILPMSIPGIITGAVLVFTGAM 211 Query: 211 TAYTTPALLGG-KERVVSTFLYQNAMTLNDWQXXXXXXXXXXXXTFVVVGLMNAWANRLN 269 TAYTTP LLGG K ++ST +YQ AMTLNDW T +V+ +NA A RL+ Sbjct: 212 TAYTTPQLLGGPKNMLLSTLIYQRAMTLNDWTGASVVALVMIVTTLIVMKGLNAIAGRLD 271 Query: 270 PKG 272 +G Sbjct: 272 KRG 274 >Q0TR17.1 Q0TR17_CLOP1 ABC transporter, permease protein Length = 276 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 110/252 (43%), Positives = 158/252 (62%), Gaps = 1/252 (0%) Query: 22 IPITLTIASTFVQDGKLTLEGYLHFFRDGYFNRILLTTLRVSAVTTLVCMVLGYPVAYYI 81 +P+ I TF Y FF D Y I L T+++S V++++CM +G PV+YYI Sbjct: 23 VPLLDVIIPTFTNTNGGMFSAYKEFFTDSYMMSIFLRTIKISLVSSIICMFIGVPVSYYI 82 Query: 82 SRTSVRKKSVLLALSIFPLLTSPVVRSFSWMIILGKKGLVNSLLVNTGIIDKPLDILYTP 141 SR S + + L+AL++FP+LT+ VVRSF+WM ILGK G++NSLL+ +I +PL +LYT Sbjct: 83 SRVSKKVRGFLIALTVFPILTNSVVRSFAWMSILGKNGIINSLLMKFNLIQEPLSLLYTE 142 Query: 142 TAMMIGLVHLFLPLIIITLLGVMENLDHELVRAARSLGASPFTAFRKITFPXXXXXXXXX 201 A++IG +++FLPL+II+L+GVMEN+D++L+ AA SLGA+ AF K+ FP Sbjct: 143 GAIIIGTIYIFLPLMIISLVGVMENIDNDLLEAAESLGANRLKAFFKVVFPLSLPGLIVG 202 Query: 202 XXXXXXXXXTAYTTPALLGG-KERVVSTFLYQNAMTLNDWQXXXXXXXXXXXXTFVVVGL 260 TAYTTP LLGG K V++T +YQ MTL DWQ T +V+ Sbjct: 203 TVLVFTGSLTAYTTPQLLGGNKNTVLATLIYQKTMTLGDWQGAAVVATIMIVVTLIVIKG 262 Query: 261 MNAWANRLNPKG 272 +N A+RL+ +G Sbjct: 263 INFLASRLDKRG 274 >B1REJ9.1 B1REJ9_CLOPE ABC transporter, permease protein Length = 276 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/252 (43%), Positives = 157/252 (62%), Gaps = 1/252 (0%) Query: 22 IPITLTIASTFVQDGKLTLEGYLHFFRDGYFNRILLTTLRVSAVTTLVCMVLGYPVAYYI 81 +P+ I TF Y FF D Y I T+++S V++++CM +G PV+YYI Sbjct: 23 VPLVDVIIPTFTNTNGGMFSAYKEFFTDSYMMSIFWRTIKISLVSSIICMFIGVPVSYYI 82 Query: 82 SRTSVRKKSVLLALSIFPLLTSPVVRSFSWMIILGKKGLVNSLLVNTGIIDKPLDILYTP 141 SR S + + L+AL++FP+LT+ VVRSF+WM ILGK G++NSLL+ +I +PL +LYT Sbjct: 83 SRVSKKVRGFLIALTVFPILTNSVVRSFAWMSILGKNGIINSLLMKFNLIQEPLSLLYTE 142 Query: 142 TAMMIGLVHLFLPLIIITLLGVMENLDHELVRAARSLGASPFTAFRKITFPXXXXXXXXX 201 A++IG +++FLPL+II+L+GVMEN+D++L+ AA SLGA+ AF K+ FP Sbjct: 143 GAIIIGTIYIFLPLMIISLVGVMENIDNDLLEAAESLGANRLKAFFKVVFPLSLPGLIVG 202 Query: 202 XXXXXXXXXTAYTTPALLGG-KERVVSTFLYQNAMTLNDWQXXXXXXXXXXXXTFVVVGL 260 TAYTTP LLGG K V++T +YQ MTL DWQ T +V+ Sbjct: 203 TVLVFTGSLTAYTTPQLLGGNKNTVLATLIYQKTMTLGDWQGAAVVATIMIVVTLIVIKG 262 Query: 261 MNAWANRLNPKG 272 +N A+RL+ +G Sbjct: 263 INFLASRLDKRG 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,271,731,208 Number of extensions: 44737066 Number of successful extensions: 165430 Number of sequences better than 1.0e-05: 4323 Number of HSP's gapped: 166025 Number of HSP's successfully gapped: 4339 Length of query: 272 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 139 Effective length of database: 1,807,701,208 Effective search space: 251270467912 Effective search space used: 251270467912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)