BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0003.p (198 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8P0.1 C0Z8P0_BREBN ABC transporter substrate binding protein 282 1e-74 Q5WD22.1 Q5WD22_BACSK Spermidine/putrescine ABC transporter subs... 251 3e-65 B9JGX9.1 B9JGX9_AGRRK Spermidine/putrescine ABC transporter 149 1e-34 Q0TR20.1 Q0TR20_CLOP1 ABC transporter, substrate-binding protein 142 1e-32 B1BRM7.1 B1BRM7_CLOPE ABC transporter, substrate-binding protein 142 1e-32 >C0Z8P0.1 C0Z8P0_BREBN ABC transporter substrate binding protein Length = 357 Score = 282 bits (721), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 160/197 (81%), Gaps = 1/197 (0%) Query: 1 VKSWSDMWT-QFDKNLTLPAITATAGPMIVDAASVAAGGSEFNEDQAFTKLKELDSNVVK 59 +K W D+W + LTLP+IT+T GPM++D+AS AG EFNEDQAF K+KE++ NVVK Sbjct: 159 IKDWKDLWNPELTGKLTLPSITSTTGPMVLDSASAVAGSKEFNEDQAFAKMKEVNKNVVK 218 Query: 60 YYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDAKFVAPSEGAYAVMNTVNVVKGSD 119 +Y +TSEYVNMFGQEEI GPIMEMYFKD++AAVP+A FV P+ G YAVMNTVN+VKGS Sbjct: 219 FYDKTSEYVNMFGQEEIGVGPIMEMYFKDIKAAVPEAVFVQPASGGYAVMNTVNIVKGSK 278 Query: 120 NKELAEAFINWQLSKEVQEKSAKAKVDSPVNTEVVLTDEEAVGVTYGADVISKLRKLDMS 179 NK LAE FIN+QLSKEVQEK+AKAK+DSPVN V LT+EEA GVTYG + +SKL+ LDM Sbjct: 279 NKALAEDFINYQLSKEVQEKTAKAKIDSPVNKTVQLTEEEAKGVTYGEETVSKLKMLDMK 338 Query: 180 FVNQHITEWTDRFNREI 196 FVN+H W DR+NREI Sbjct: 339 FVNEHSKAWIDRWNREI 355 >Q5WD22.1 Q5WD22_BACSK Spermidine/putrescine ABC transporter substrate-binding protein Length = 348 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 126/197 (63%), Positives = 152/197 (77%), Gaps = 1/197 (0%) Query: 1 VKSWSDMWT-QFDKNLTLPAITATAGPMIVDAASVAAGGSEFNEDQAFTKLKELDSNVVK 59 ++SWSD+W NLT+P+IT+T GPM +DAAS+ AG EFN D AF + +L N+VK Sbjct: 150 IESWSDLWDDSLAGNLTIPSITSTTGPMFLDAASIVAGQEEFNADAAFAAIADLKGNIVK 209 Query: 60 YYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDAKFVAPSEGAYAVMNTVNVVKGSD 119 Y ++S++VNMF Q EIA GP MEMYF DLQAAVP+A+FV P+EG YAVMNTVNVVK SD Sbjct: 210 EYDKSSDFVNMFTQGEIAAGPFMEMYFHDLQAAVPEAEFVTPTEGGYAVMNTVNVVKDSD 269 Query: 120 NKELAEAFINWQLSKEVQEKSAKAKVDSPVNTEVVLTDEEAVGVTYGADVISKLRKLDMS 179 NKELAEAFINW LSKEVQE SAKAKVDSPVN +V L+++EA GVTYG + I L LDM Sbjct: 270 NKELAEAFINWHLSKEVQEASAKAKVDSPVNIDVELSEQEAEGVTYGEETIEALNLLDME 329 Query: 180 FVNQHITEWTDRFNREI 196 +VN EW DR+N+EI Sbjct: 330 YVNSESAEWIDRWNKEI 346 >B9JGX9.1 B9JGX9_AGRRK Spermidine/putrescine ABC transporter Length = 346 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 2/199 (1%) Query: 1 VKSWSDMWTQ-FDKNLTLPAITATAGPMIVDAASVAAGGSEFNE-DQAFTKLKELDSNVV 58 + SWSD+W +TLP IT TAGP+ V A AG + + D+AF + L NVV Sbjct: 147 ITSWSDLWRDDLKSAVTLPGITTTAGPLTVLEAGKHAGADAYEDTDKAFEAITALKPNVV 206 Query: 59 KYYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDAKFVAPSEGAYAVMNTVNVVKGS 118 K Y+ SE VN+ E + +QAAVP + + +G A +NTVN+ KGS Sbjct: 207 KNYNTGSELVNLISTGEAKVALAQDFTLASMQAAVPTMTWASLKDGDMATLNTVNIPKGS 266 Query: 119 DNKELAEAFINWQLSKEVQEKSAKAKVDSPVNTEVVLTDEEAVGVTYGADVISKLRKLDM 178 +N ELA FIN+ LSK+VQ+ A+ VD+PV+T+VVLT ++A TYGAD+I+KL ++D Sbjct: 267 ENVELAHQFINFILSKDVQQAEAEQGVDAPVSTKVVLTPDQAKLWTYGADMIAKLGRIDY 326 Query: 179 SFVNQHITEWTDRFNREIG 197 + +N ++W DR+N G Sbjct: 327 AKLNAAQSDWIDRWNEIFG 345 >Q0TR20.1 Q0TR20_CLOP1 ABC transporter, substrate-binding protein Length = 348 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 115/197 (58%), Gaps = 4/197 (2%) Query: 1 VKSWSDMWTQFDKN-LTLPAITATAGPMIVDAASVAAGG--SEFNEDQAFTKLKELDSNV 57 + SW D+W KN + +P IT T GP +V+ A+ AG N + AF +L+ L NV Sbjct: 150 INSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKTDNGEAAFKELEALKPNV 209 Query: 58 VKYYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDAKFVAPSEGAYAVMNTVNVVKG 117 VK YS++S+ NMF EI + F + A P+ V P G Y NT+N+ K Sbjct: 210 VKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKN 269 Query: 118 SDNKELAEAFINWQLSKEVQEKSAKAKVDSPVNTEVVLTDEEAVGVTYGADVISKLRKLD 177 S NK+LA FIN+ LSKEVQEK+AKA +SPVN EV L++EE +TYG V+ + +D Sbjct: 270 SKNKDLAYEFINYALSKEVQEKTAKALNESPVNKEVKLSEEETKNLTYGP-VVDNAKVID 328 Query: 178 MSFVNQHITEWTDRFNR 194 FVN + +W + +NR Sbjct: 329 FKFVNSVMDQWVNNWNR 345 >B1BRM7.1 B1BRM7_CLOPE ABC transporter, substrate-binding protein Length = 348 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 115/197 (58%), Gaps = 4/197 (2%) Query: 1 VKSWSDMWTQFDKN-LTLPAITATAGPMIVDAASVAAGG--SEFNEDQAFTKLKELDSNV 57 + SW D+W KN + +P IT T GP +V+ A+ AG N + AF +L+ L NV Sbjct: 150 INSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKTDNGEAAFKELEALKPNV 209 Query: 58 VKYYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDAKFVAPSEGAYAVMNTVNVVKG 117 VK YS++S+ NMF EI + F + A P+ V P G Y NT+N+ K Sbjct: 210 VKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKN 269 Query: 118 SDNKELAEAFINWQLSKEVQEKSAKAKVDSPVNTEVVLTDEEAVGVTYGADVISKLRKLD 177 S NK+LA FIN+ LSKEVQEK+AKA +SPVN EV L++EE +TYG V+ + +D Sbjct: 270 SKNKDLAYEFINYALSKEVQEKTAKALNESPVNKEVKLSEEETKNLTYGP-VVDNAKVID 328 Query: 178 MSFVNQHITEWTDRFNR 194 FVN + +W + +NR Sbjct: 329 FKFVNSVMDQWVNNWNR 345 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.127 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,163,498,635 Number of extensions: 43520976 Number of successful extensions: 97600 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 97637 Number of HSP's successfully gapped: 152 Length of query: 198 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 69 Effective length of database: 1,845,385,268 Effective search space: 127331583492 Effective search space used: 127331583492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)