BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0002.p
         (167 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z8P0.1 C0Z8P0_BREBN ABC transporter substrate binding protein       175   1e-42
Q5WD22.1 Q5WD22_BACSK Spermidine/putrescine ABC transporter subs...   162   1e-38
B1REK2.1 B1REK2_CLOPE ABC transporter, substrate-binding protein      103   7e-21
Q0TR20.1 Q0TR20_CLOP1 ABC transporter, substrate-binding protein      102   1e-20
B1BRM7.1 B1BRM7_CLOPE ABC transporter, substrate-binding protein      102   1e-20

>C0Z8P0.1 C0Z8P0_BREBN ABC transporter substrate binding protein
          Length = 357

 Score =  175 bits (444), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/96 (83%), Positives = 89/96 (92%)

Query: 53  LVISTWGFSEDFFKESVYAPFEKEHNVKIVVEIGNNAERLNKIRQGSSDVDVVYLSDYYA 112
           LVISTWGFSEDFF++ VY PFEKEHNVKIV+EIGNNAERLNK+RQGSSDVD++YLSDYYA
Sbjct: 43  LVISTWGFSEDFFRKEVYEPFEKEHNVKIVLEIGNNAERLNKVRQGSSDVDLIYLSDYYA 102

Query: 113 QQAINEGLFETIDRSKIPNLDKIYDIAKAPLGKEYG 148
           QQ I  G FE IDRS+IPNLD+IYDIAKAPLG+EYG
Sbjct: 103 QQGIESGAFEKIDRSRIPNLDQIYDIAKAPLGEEYG 138


>Q5WD22.1 Q5WD22_BACSK Spermidine/putrescine ABC transporter
           substrate-binding protein
          Length = 348

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 86/96 (89%)

Query: 53  LVISTWGFSEDFFKESVYAPFEKEHNVKIVVEIGNNAERLNKIRQGSSDVDVVYLSDYYA 112
           LVISTWGF+EDFFKE VY PF++E+NV IVV+IGNNAERLNKIRQG+++VDVVYLSDYYA
Sbjct: 34  LVISTWGFAEDFFKEEVYKPFQEEYNVNIVVDIGNNAERLNKIRQGTANVDVVYLSDYYA 93

Query: 113 QQAINEGLFETIDRSKIPNLDKIYDIAKAPLGKEYG 148
           QQ I EGLF  IDRS I N+D +YDIAKAPLG+EYG
Sbjct: 94  QQGIEEGLFAEIDRSNIENIDNLYDIAKAPLGEEYG 129


>B1REK2.1 B1REK2_CLOPE ABC transporter, substrate-binding protein
          Length = 348

 Score =  103 bits (256), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 71/97 (73%), Gaps = 1/97 (1%)

Query: 53  LVISTWGFSEDFFKESVYAPFEKEHNVKIVVEIGNNAERLNKIRQG-SSDVDVVYLSDYY 111
           LV+STWG +ED  KE+V+ PF KEH V+IV++IGNN+ERL KI+   +S +D+ YL++ +
Sbjct: 34  LVVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNSERLTKIKNNPNSQIDITYLAESF 93

Query: 112 AQQAINEGLFETIDRSKIPNLDKIYDIAKAPLGKEYG 148
           A+Q +  G+F+ +D SKIPN  ++ + AK+ +   YG
Sbjct: 94  AEQGVEAGIFDKLDYSKIPNASEMNEKAKSTVEAGYG 130


>Q0TR20.1 Q0TR20_CLOP1 ABC transporter, substrate-binding protein
          Length = 348

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 71/97 (73%), Gaps = 1/97 (1%)

Query: 53  LVISTWGFSEDFFKESVYAPFEKEHNVKIVVEIGNNAERLNKIRQG-SSDVDVVYLSDYY 111
           LV+STWG +ED  KE+V+ PF KEH V+IV++IGNN+ERL K++   +S +D+ YL++ +
Sbjct: 34  LVVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNSERLTKMKNNPNSQIDITYLAESF 93

Query: 112 AQQAINEGLFETIDRSKIPNLDKIYDIAKAPLGKEYG 148
           A+Q +  G+F+ +D SKIPN  ++ + AK+ +   YG
Sbjct: 94  AEQGVEAGIFDKLDYSKIPNASEMNEKAKSTVEAGYG 130


>B1BRM7.1 B1BRM7_CLOPE ABC transporter, substrate-binding protein
          Length = 348

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 71/97 (73%), Gaps = 1/97 (1%)

Query: 53  LVISTWGFSEDFFKESVYAPFEKEHNVKIVVEIGNNAERLNKIRQG-SSDVDVVYLSDYY 111
           LV+STWG +ED  KE+V+ PF KEH V+IV++IGNN+ERL K++   +S +D+ YL++ +
Sbjct: 34  LVVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNSERLTKMKNNPNSQIDITYLAESF 93

Query: 112 AQQAINEGLFETIDRSKIPNLDKIYDIAKAPLGKEYG 148
           A+Q +  G+F+ +D SKIPN  ++ + AK+ +   YG
Sbjct: 94  AEQGVEAGIFDKLDYSKIPNASEMNEKAKSTVEAGYG 130


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 677,418,456
Number of extensions: 23790191
Number of successful extensions: 60366
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 60967
Number of HSP's successfully gapped: 76
Length of query: 167
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 42
Effective length of database: 1,883,069,328
Effective search space: 79088911776
Effective search space used: 79088911776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)