BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0004.p (424 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3B434.1 C3B434_BACMY Major facilitator superfamily MFS_1 441 e-122 C3ALZ6.1 C3ALZ6_BACMY Major facilitator superfamily MFS_1 441 e-122 C3BKV1.1 C3BKV1_9BACI Major facilitator superfamily MFS_1 436 e-120 C1EWS1.1 C1EWS1_BACC3 Putative oxalate:formate antiporter 431 e-119 A0RER1.1 A0RER1_BACAH Oxalate:formate antiporter 431 e-119 >C3B434.1 C3B434_BACMY Major facilitator superfamily MFS_1 Length = 402 Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/408 (54%), Positives = 267/408 (65%), Gaps = 18/408 (4%) Query: 5 AGSKRWLIVLGTVIMQMGLGTIYTWSLFNAQLVSKFGWELXXXXXXXXXXXXXXXXXXXX 64 A WLIVLGT+I+Q+GLGTIYTWSLFN LVSKFGWEL Sbjct: 4 ASVNPWLIVLGTIIVQIGLGTIYTWSLFNQPLVSKFGWELHTVAITFSITSFSLSFSTLF 63 Query: 65 XGKLQDRLGLRRLTAAAGIMLGLGLIFSSQARSLPMLYLLAGVVVGYADGTAYITSLSNL 124 GKLQ ++GLR+L A AGI+LG+GLI SSQ SLP+LYLLAGVVVGYADGTAYITSLSNL Sbjct: 64 AGKLQQKMGLRKLIATAGIVLGVGLILSSQVSSLPLLYLLAGVVVGYADGTAYITSLSNL 123 Query: 125 IKWFPKNKGLISGVSVGAYGTGSLLFKYINGSLIDSAGVSNAFLYWGLMVMAMIVIGSML 184 IKWFP KGLISG+SV AYG GSL+FKY+NG LID+ GVS AFLYWG++V+ +I+ GS Sbjct: 124 IKWFPNRKGLISGISVSAYGMGSLIFKYVNGKLIDTVGVSEAFLYWGIIVLIVILAGSFF 183 Query: 185 VREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDYTVKEMLRTKEAYLLFVVFFTACMS 244 +RE DY+ KEMLRTK+ YLLF + FT+CMS Sbjct: 184 LRE------------------AATNETVSETLSNDYSTKEMLRTKQVYLLFFMLFTSCMS 225 Query: 245 GLYLIGVVKDIGVQLXXXXXXXXXXXXXXXXXXXTAGRLILGALSDRMSRLKXXXXXXXX 304 GLYLIG+VKDIGVQL T GR++LG LSD++ RLK Sbjct: 226 GLYLIGMVKDIGVQLVGLSVATAANAVAMIAVFNTVGRIVLGTLSDKIGRLKIVSATFIV 285 Query: 305 XXXXXXXXXYATLSYGLFFTCVAAIAFCFGGNITVFPAIVGDFFGLANHSKNYGIVYQGF 364 + L+Y ++FTCVA++AFCFGGNIT+FPAIVGDFFGL NHS NYGIVYQGF Sbjct: 286 IGLSVFTLSFMNLNYAIYFTCVASVAFCFGGNITIFPAIVGDFFGLKNHSTNYGIVYQGF 345 Query: 365 GIGALSGSFVAAFLGGFKPTFTVIGXXXXXXXXXXVSLKPPVQKQARE 412 G GAL+GSF+ A LGGF+PTF IG + ++PP +++ +E Sbjct: 346 GFGALAGSFIGALLGGFQPTFITIGILCIVSFIISILIRPPSKEKKKE 393 >C3ALZ6.1 C3ALZ6_BACMY Major facilitator superfamily MFS_1 Length = 402 Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/408 (54%), Positives = 267/408 (65%), Gaps = 18/408 (4%) Query: 5 AGSKRWLIVLGTVIMQMGLGTIYTWSLFNAQLVSKFGWELXXXXXXXXXXXXXXXXXXXX 64 A WLIVLGT+I+Q+GLGTIYTWSLFN LVSKFGWEL Sbjct: 4 ASVNPWLIVLGTIIVQIGLGTIYTWSLFNQPLVSKFGWELHTVAITFSITSFSLSFSTLF 63 Query: 65 XGKLQDRLGLRRLTAAAGIMLGLGLIFSSQARSLPMLYLLAGVVVGYADGTAYITSLSNL 124 GKLQ ++GLR+L A AGI+LG+GLI SSQ SLP+LYLLAGVVVGYADGTAYITSLSNL Sbjct: 64 AGKLQQKMGLRKLIATAGIVLGVGLILSSQVSSLPLLYLLAGVVVGYADGTAYITSLSNL 123 Query: 125 IKWFPKNKGLISGVSVGAYGTGSLLFKYINGSLIDSAGVSNAFLYWGLMVMAMIVIGSML 184 IKWFP KGLISG+SV AYG GSL+FKY+NG LID+ GVS AFLYWG++V+ +I+ GS Sbjct: 124 IKWFPNRKGLISGISVSAYGMGSLIFKYVNGKLIDTVGVSEAFLYWGIIVLIVILAGSFF 183 Query: 185 VREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDYTVKEMLRTKEAYLLFVVFFTACMS 244 +RE DY+ KEMLRTK+ YLLF + FT+CMS Sbjct: 184 LRE------------------AATNETVSETLSNDYSTKEMLRTKQVYLLFFMLFTSCMS 225 Query: 245 GLYLIGVVKDIGVQLXXXXXXXXXXXXXXXXXXXTAGRLILGALSDRMSRLKXXXXXXXX 304 GLYLIG+VKDIGVQL T GR++LG LSD++ RLK Sbjct: 226 GLYLIGMVKDIGVQLVGLSVATAANAVAMIAVFNTVGRIVLGTLSDKIGRLKIVSATFIV 285 Query: 305 XXXXXXXXXYATLSYGLFFTCVAAIAFCFGGNITVFPAIVGDFFGLANHSKNYGIVYQGF 364 + L+Y ++FTCVA++AFCFGGNIT+FPAIVGDFFGL NHS NYGIVYQGF Sbjct: 286 IGLSVFTLSFMNLNYAIYFTCVASVAFCFGGNITIFPAIVGDFFGLKNHSTNYGIVYQGF 345 Query: 365 GIGALSGSFVAAFLGGFKPTFTVIGXXXXXXXXXXVSLKPPVQKQARE 412 G GAL+GSF+ A LGGF+PTF IG + ++PP +++ +E Sbjct: 346 GFGALAGSFIGALLGGFQPTFITIGILCIVSFIISILIRPPSKEKKKE 393 >C3BKV1.1 C3BKV1_9BACI Major facilitator superfamily MFS_1 Length = 402 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 221/403 (54%), Positives = 266/403 (66%), Gaps = 18/403 (4%) Query: 10 WLIVLGTVIMQMGLGTIYTWSLFNAQLVSKFGWELXXXXXXXXXXXXXXXXXXXXXGKLQ 69 WLIVLGT+I+Q+GLGTIYTWSLFN LVSKFGWEL GKLQ Sbjct: 9 WLIVLGTIIVQIGLGTIYTWSLFNQPLVSKFGWELHTVAITFSITSFSLSFSTLFAGKLQ 68 Query: 70 DRLGLRRLTAAAGIMLGLGLIFSSQARSLPMLYLLAGVVVGYADGTAYITSLSNLIKWFP 129 ++GLR+L A AGI+LG+GLI SSQ SLP+LYLLAGVVVGYADGTAYITSLSNLIKWFP Sbjct: 69 RKMGLRKLIATAGIVLGVGLILSSQVSSLPLLYLLAGVVVGYADGTAYITSLSNLIKWFP 128 Query: 130 KNKGLISGVSVGAYGTGSLLFKYINGSLIDSAGVSNAFLYWGLMVMAMIVIGSMLVREXX 189 KGLISG+SV AYG GSL+FKY+NG LID+ GVS AFLYWG++V+ +I+ GS +RE Sbjct: 129 NRKGLISGISVSAYGMGSLIFKYVNGKLIDTVGVSEAFLYWGIIVLIVILAGSFFLRE-- 186 Query: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKDYTVKEMLRTKEAYLLFVVFFTACMSGLYLI 249 DY+ KEMLRTK+ YLLF + FT+CMSGLYLI Sbjct: 187 ----------------AATNETVSETLSNDYSTKEMLRTKQVYLLFFMLFTSCMSGLYLI 230 Query: 250 GVVKDIGVQLXXXXXXXXXXXXXXXXXXXTAGRLILGALSDRMSRLKXXXXXXXXXXXXX 309 G+VKDIGVQL T GR++LG LSD++ RLK Sbjct: 231 GMVKDIGVQLVGLSVATAANAVAMIAVFNTVGRIVLGTLSDKIGRLKIVSATFIVIGLSV 290 Query: 310 XXXXYATLSYGLFFTCVAAIAFCFGGNITVFPAIVGDFFGLANHSKNYGIVYQGFGIGAL 369 + L+Y ++FTCVA++AFCFGGNIT+FPAIVGDFFGL NHS NYGIVYQGFG GAL Sbjct: 291 FTLSFMNLNYAIYFTCVASVAFCFGGNITIFPAIVGDFFGLKNHSTNYGIVYQGFGFGAL 350 Query: 370 SGSFVAAFLGGFKPTFTVIGXXXXXXXXXXVSLKPPVQKQARE 412 +GSF+ A LGGF+PTF IG + ++PP +++ +E Sbjct: 351 AGSFIGALLGGFQPTFITIGILCIISFIISILIRPPSKEKKKE 393 >C1EWS1.1 C1EWS1_BACC3 Putative oxalate:formate antiporter Length = 402 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 220/402 (54%), Positives = 264/402 (65%), Gaps = 18/402 (4%) Query: 11 LIVLGTVIMQMGLGTIYTWSLFNAQLVSKFGWELXXXXXXXXXXXXXXXXXXXXXGKLQD 70 LIVLGT+I+Q+GLGTIYTWSLFN LVSKFGW L GKLQ Sbjct: 10 LIVLGTIIVQIGLGTIYTWSLFNQPLVSKFGWNLNSVAITFSITSFSLSFSTLFAGKLQQ 69 Query: 71 RLGLRRLTAAAGIMLGLGLIFSSQARSLPMLYLLAGVVVGYADGTAYITSLSNLIKWFPK 130 +LGLR+L A AGI+LGLGLI SSQ SLP+LYLLAGVVVGYADGTAYITSLSNLIKWFP Sbjct: 70 KLGLRKLIATAGIVLGLGLILSSQVSSLPLLYLLAGVVVGYADGTAYITSLSNLIKWFPN 129 Query: 131 NKGLISGVSVGAYGTGSLLFKYINGSLIDSAGVSNAFLYWGLMVMAMIVIGSMLVREXXX 190 KGLISG+SV AYG GSL+F+YINGSLIDS GVS AFLYWG++V+ +++IGS +RE Sbjct: 130 RKGLISGISVSAYGMGSLIFRYINGSLIDSLGVSQAFLYWGIIVLLLVLIGSFFLRE--- 186 Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXKDYTVKEMLRTKEAYLLFVVFFTACMSGLYLIG 250 DYT +EM+RTK+ YLLF + FT+CM GLYLIG Sbjct: 187 ---------------AIVSNTVTETLHNDYTPREMMRTKQVYLLFFMLFTSCMGGLYLIG 231 Query: 251 VVKDIGVQLXXXXXXXXXXXXXXXXXXXTAGRLILGALSDRMSRLKXXXXXXXXXXXXXX 310 +VKDIGVQL T GR++LG LSD++ R+K Sbjct: 232 MVKDIGVQLVGLSAATAANAVAMIAIFNTVGRIVLGTLSDKIGRMKIVSATFIIIGLSVF 291 Query: 311 XXXYATLSYGLFFTCVAAIAFCFGGNITVFPAIVGDFFGLANHSKNYGIVYQGFGIGALS 370 Y L+YG++F CVA++AFCFGGNIT+FPAIVGD+FGL NHS NYGIVYQGFG GAL+ Sbjct: 292 TLSYIPLNYGIYFACVASVAFCFGGNITIFPAIVGDYFGLKNHSTNYGIVYQGFGFGALA 351 Query: 371 GSFVAAFLGGFKPTFTVIGXXXXXXXXXXVSLKPPVQKQARE 412 GSF+ A LGGF+PTF IG + ++PP ++ +E Sbjct: 352 GSFIGALLGGFQPTFITIGVLSVISFIISLVIRPPKTEKKKE 393 >A0RER1.1 A0RER1_BACAH Oxalate:formate antiporter Length = 402 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 220/402 (54%), Positives = 264/402 (65%), Gaps = 18/402 (4%) Query: 11 LIVLGTVIMQMGLGTIYTWSLFNAQLVSKFGWELXXXXXXXXXXXXXXXXXXXXXGKLQD 70 LIVLGT+I+Q+GLGTIYTWSLFN LVSKFGW L GKLQ Sbjct: 10 LIVLGTIIVQIGLGTIYTWSLFNQPLVSKFGWNLNSVAITFSITSFSLSFSTLFAGKLQQ 69 Query: 71 RLGLRRLTAAAGIMLGLGLIFSSQARSLPMLYLLAGVVVGYADGTAYITSLSNLIKWFPK 130 +LGLR+L A AGI+LGLGLI SSQ SLP+LYLLAGVVVGYADGTAYITSLSNLIKWFP Sbjct: 70 KLGLRKLIATAGIVLGLGLILSSQVSSLPLLYLLAGVVVGYADGTAYITSLSNLIKWFPN 129 Query: 131 NKGLISGVSVGAYGTGSLLFKYINGSLIDSAGVSNAFLYWGLMVMAMIVIGSMLVREXXX 190 KGLISG+SV AYG GSL+F+YINGSLIDS GVS AFLYWG++V+ +++IGS +RE Sbjct: 130 RKGLISGISVSAYGMGSLIFRYINGSLIDSLGVSQAFLYWGIIVLLLVLIGSFFLRE--- 186 Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXKDYTVKEMLRTKEAYLLFVVFFTACMSGLYLIG 250 DYT +EM+RTK+ YLLF + FT+CM GLYLIG Sbjct: 187 ---------------AIVSNTVTETLHNDYTPREMMRTKQVYLLFFMLFTSCMGGLYLIG 231 Query: 251 VVKDIGVQLXXXXXXXXXXXXXXXXXXXTAGRLILGALSDRMSRLKXXXXXXXXXXXXXX 310 +VKDIGVQL T GR++LG LSD++ R+K Sbjct: 232 MVKDIGVQLVGLSAATAANAVAMIAIFNTVGRIVLGTLSDKIGRMKIVSATFIIIGLSVF 291 Query: 311 XXXYATLSYGLFFTCVAAIAFCFGGNITVFPAIVGDFFGLANHSKNYGIVYQGFGIGALS 370 Y L+YG++F CVA++AFCFGGNIT+FPAIVGD+FGL NHS NYGIVYQGFG GAL+ Sbjct: 292 TLSYIPLNYGIYFACVASVAFCFGGNITIFPAIVGDYFGLKNHSTNYGIVYQGFGFGALA 351 Query: 371 GSFVAAFLGGFKPTFTVIGXXXXXXXXXXVSLKPPVQKQARE 412 GSF+ A LGGF+PTF IG + ++PP ++ +E Sbjct: 352 GSFIGALLGGFQPTFITIGVLSVISFIISLVIRPPKTEKKKE 393 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.142 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,831,066,153 Number of extensions: 64238829 Number of successful extensions: 274204 Number of sequences better than 1.0e-05: 889 Number of HSP's gapped: 273082 Number of HSP's successfully gapped: 1261 Length of query: 424 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 286 Effective length of database: 1,760,596,133 Effective search space: 503530494038 Effective search space used: 503530494038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)