BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0001.p (186 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4BT81.1 B4BT81_9BACI Putative uncharacterized protein 212 1e-53 A6CJC8.1 A6CJC8_9BACI Putative uncharacterized protein 196 6e-49 B1D557.1 B1D557_9BACL Putative uncharacterized protein 193 5e-48 C2W7L0.1 C2W7L0_BACCE Putative uncharacterized protein 188 2e-46 Q5WAS6.1 Q5WAS6_BACSK Putative uncharacterized protein 185 1e-45 >B4BT81.1 B4BT81_9BACI Putative uncharacterized protein Length = 193 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 91/182 (50%), Positives = 130/182 (71%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 D+++++KED WM++IL AV+ L+LPD WVCAGFVRSK+WD HGF ERTP+ Sbjct: 8 DIIQLIKEDEWMIDILKAVKSLNLPDWWVCAGFVRSKIWDTLHGFKERTPIPDIDVIYFD 67 Query: 62 XXXXREEVEKSWEAQLRSTAPSVPWSVKNQARMHTVNGLAPYSSSTDGMSKFPETATALG 121 E EK +E +LR+ P+VPWSVKN+ARMH VN ++PYSSS D +SKFPETAT+LG Sbjct: 68 DTNMDELEEKKFEMRLRNILPNVPWSVKNEARMHIVNNISPYSSSVDAISKFPETATSLG 127 Query: 122 LAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQLQVL 181 + +DE ++ L AP GV D + + V+P+P+F+ + +L IYE R+ KNW+ +W +++V Sbjct: 128 VKLDEKDDIILVAPWGVDDVINMEVKPTPYFKESKELSQIYEERITKKNWKDIWYKVKVF 187 Query: 182 SV 183 + Sbjct: 188 HI 189 >A6CJC8.1 A6CJC8_9BACI Putative uncharacterized protein Length = 186 Score = 196 bits (499), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 87/179 (48%), Positives = 122/179 (68%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 ++L V+KED+WMM+IL A + L LPD W+CAGFVRSK+WD HGF++RT L Sbjct: 6 EVLMVIKEDKWMMDILKAAQTLDLPDWWICAGFVRSKIWDSLHGFSKRTSLPDVDVVYFD 65 Query: 62 XXXXREEVEKSWEAQLRSTAPSVPWSVKNQARMHTVNGLAPYSSSTDGMSKFPETATALG 121 E EK E L+ P+VPWSVKN+ARMH +N + PY+S+ D +SKFPETATALG Sbjct: 66 QSNCDEAHEKKLENCLKQLLPNVPWSVKNEARMHIINNIPPYTSTVDAISKFPETATALG 125 Query: 122 LAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQLQV 180 + +D+ +L L APHG+ D L + +RP+P+ + + +L +YE R+ KNW A W +++V Sbjct: 126 VKLDKNDDLVLTAPHGLEDVLNMELRPTPYMKTSKELTALYEKRILKKNWSAAWPKVKV 184 >B1D557.1 B1D557_9BACL Putative uncharacterized protein Length = 379 Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 94/188 (50%), Positives = 120/188 (63%), Gaps = 5/188 (2%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 D+ +V ED WMM +L ++LPD WVCAGFVRSKVWD HG+ ER L Sbjct: 9 DVKALVLEDEWMMKVLHTAGSMNLPDWWVCAGFVRSKVWDYLHGYPERFALPDVDLIYYD 68 Query: 62 XXXXREEVEKSWEAQLRSTAPSVPWSVKNQARMHTVNGLAPYSSSTDGMSKFPETATALG 121 E EK+ E +LR P VPWSVKN+ARMH VN + PY+S+ D MSKFPET TALG Sbjct: 69 PSQTDEAAEKALEQKLRDVMPDVPWSVKNEARMHLVNEIEPYASAVDAMSKFPETVTALG 128 Query: 122 LAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQL--- 178 L +DE + L+APHG+ D L+ VRP+PHF+ + L PIYE R+ KNW++ W+++ Sbjct: 129 LTLDEQNGVVLSAPHGIQDLLDFLVRPTPHFKQSPALMPIYEKRLLQKNWKSRWNKVDAA 188 Query: 179 --QVLSVR 184 QV VR Sbjct: 189 LTQVYMVR 196 >C2W7L0.1 C2W7L0_BACCE Putative uncharacterized protein Length = 191 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 115/180 (63%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 D++++++ D WM+ +L V+ L LPD WVCAGFVRSK+WDV HG+ RTP Sbjct: 8 DIIKLIQNDTWMIEVLQTVKSLQLPDWWVCAGFVRSKIWDVLHGYEVRTPTPDIDIIYFD 67 Query: 62 XXXXREEVEKSWEAQLRSTAPSVPWSVKNQARMHTVNGLAPYSSSTDGMSKFPETATALG 121 E E+ E +L++ ++PWSVKNQARMH VN + PYSSS D +SKFPETATALG Sbjct: 68 PLHISESAEEKLENKLKNIDSTIPWSVKNQARMHVVNNMPPYSSSIDAISKFPETATALG 127 Query: 122 LAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQLQVL 181 + +D+ + L AP G+ D L L V+P+PHF + +YE R+ KNWQ+ W + + Sbjct: 128 VTLDDQNHVVLTAPCGIEDVLTLQVKPTPHFLETKERTNMYEKRLQKKNWQSKWPYITIF 187 >Q5WAS6.1 Q5WAS6_BACSK Putative uncharacterized protein Length = 187 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 83/179 (46%), Positives = 114/179 (63%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 D+L++++ D+ MM I+ L LPD W+CAGFVRSK+WD HGF +RT Sbjct: 7 DILKLIQSDKKMMQIIKTTSSLDLPDWWICAGFVRSKIWDTLHGFNDRTETPDVDVIYFD 66 Query: 62 XXXXREEVEKSWEAQLRSTAPSVPWSVKNQARMHTVNGLAPYSSSTDGMSKFPETATALG 121 E VEK E+ L+ P +PWSVKNQARMH +N PY+SS D +SKFPETATALG Sbjct: 67 NTNIDENVEKGLESNLKRLMPGIPWSVKNQARMHVMNHFPPYTSSEDAISKFPETATALG 126 Query: 122 LAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQLQV 180 + +D+ L LA+P G+ D L L ++P+P+F + IY R+ KNW+A+W +L+V Sbjct: 127 VTLDKDNHLVLASPCGIEDVLHLELKPTPYFTETKERAAIYRERMMKKNWKAIWHKLKV 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.130 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,070,991,180 Number of extensions: 37168451 Number of successful extensions: 72307 Number of sequences better than 1.0e-05: 260 Number of HSP's gapped: 71961 Number of HSP's successfully gapped: 260 Length of query: 186 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 58 Effective length of database: 1,854,806,283 Effective search space: 107578764414 Effective search space used: 107578764414 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)