BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0008.p (210 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P42103.1 YXAD_BACSU Uncharacterized HTH-type transcriptional reg... 102 1e-20 C2XK83.1 C2XK83_BACCE Putative uncharacterized protein 102 2e-20 B1YG51.1 B1YG51_EXIS2 Transcriptional regulator, MarR family 102 3e-20 A7Z0W8.1 A7Z0W8_BACA2 YxaD 101 5e-20 Q2BDA1.1 Q2BDA1_9BACI Putative uncharacterized protein 95 3e-18 >P42103.1 YXAD_BACSU Uncharacterized HTH-type transcriptional regulator yxaD Length = 143 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 77/133 (57%), Gaps = 4/133 (3%) Query: 60 LESLNNELMTLIRRS----SLDKKHGGLDRSTYTLLYHLAHHEKVGVKALAEEFGLDTST 115 +E + EL T IRR+ +K+ G L+RS+Y LL L VK LAE F LD ST Sbjct: 7 VELIEYELTTFIRRAVYLDQSEKRTGNLERSSYLLLRQLDEFGPARVKELAESFKLDIST 66 Query: 116 ISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERYGEIFADWSPED 175 +SRQ + LEAK R DP DGR S F IT LG + L+ + RLERY ++ +WS ++ Sbjct: 67 LSRQAAALEAKELIYRFSDPSDGRVSLFTITKLGKQLLKADQQKRLERYEQMLKEWSTQE 126 Query: 176 CHTFSGLLARLNR 188 F LL R+N+ Sbjct: 127 KEMFGELLQRMNK 139 >C2XK83.1 C2XK83_BACCE Putative uncharacterized protein Length = 150 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 4/144 (2%) Query: 54 KKDDKNLESLNNELMTLIRRS----SLDKKHGGLDRSTYTLLYHLAHHEKVGVKALAEEF 109 KK+ ++E + +E++TL+RR+ +LD LDRS Y +L LA + ++A+AE F Sbjct: 3 KKEKDSIEIIEHEIVTLMRRADFKRTLDGHKDSLDRSGYLILKLLAAEGPLSIRAIAEIF 62 Query: 110 GLDTSTISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERYGEIFA 169 L+ ST+SRQ LE+ G R P+ D R S +T +G KLE + R E Y E A Sbjct: 63 HLNMSTVSRQVRTLESGGLVNRKPEKSDARVSIISMTDVGKNKLESSSKYRCESYMEALA 122 Query: 170 DWSPEDCHTFSGLLARLNRKLAQR 193 DWS ++ + F+ LL RLNR + +R Sbjct: 123 DWSEDEKNIFASLLTRLNRAIEKR 146 >B1YG51.1 B1YG51_EXIS2 Transcriptional regulator, MarR family Length = 147 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 1/138 (0%) Query: 57 DKNLESLNNELMTLIRR-SSLDKKHGGLDRSTYTLLYHLAHHEKVGVKALAEEFGLDTST 115 +K+LE++ EL LIRR ++ + LDR++Y LL L H +VGVK LA E LD ST Sbjct: 10 NKSLETIELELAILIRRLTTATADNRNLDRASYLLLRQLLHSGQVGVKTLARELQLDVST 69 Query: 116 ISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERYGEIFADWSPED 175 +SRQ + L+ K ++ DP DGR+ ++ IT G ++LE R RL + +W ED Sbjct: 70 VSRQAAALDQKKLVEKIKDPTDGRAFFYNITDYGQQELEIYRTARLTSIERLLTNWPDED 129 Query: 176 CHTFSGLLARLNRKLAQR 193 +F LL + N+ L +R Sbjct: 130 TESFGRLLKQFNQALRER 147 >A7Z0W8.1 A7Z0W8_BACA2 YxaD Length = 143 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/132 (43%), Positives = 77/132 (58%), Gaps = 4/132 (3%) Query: 60 LESLNNELMTLIRRS----SLDKKHGGLDRSTYTLLYHLAHHEKVGVKALAEEFGLDTST 115 +E + EL T IRR+ + D+K G L+R+ Y LL L VK LAE F LD ST Sbjct: 7 IELIEYELTTFIRRAVYLDNSDRKIGHLERAAYLLLRQLDEFGPARVKELAESFKLDIST 66 Query: 116 ISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERYGEIFADWSPED 175 +SRQ + LE+K R DP DGR S F IT LG ++L+ + +RL+RY + DWS ++ Sbjct: 67 LSRQAAALESKELIQRFSDPSDGRVSLFAITKLGKQRLKADKKMRLDRYRHMLDDWSGDE 126 Query: 176 CHTFSGLLARLN 187 F LL RLN Sbjct: 127 KEKFGRLLLRLN 138 >Q2BDA1.1 Q2BDA1_9BACI Putative uncharacterized protein Length = 145 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 54 KKDDKNLESLNNELMTLIRRS----SLDKKHGGLDRSTYTLLYHLAHHEKVGVKALAEEF 109 K+ ++E + EL T IR++ +KK G L+RS Y LL L VK LAE F Sbjct: 3 KEKQNDVELIEYELATFIRKAVYLEQSEKKIGQLERSAYLLLRQLDEFGPARVKELAEAF 62 Query: 110 GLDTSTISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERYGEIFA 169 LD ST+SRQ + LE+K R DP DGR S F IT LG KLE R Y ++ Sbjct: 63 KLDISTLSRQAASLESKDLIKRCSDPKDGRVSVFSITDLGKEKLEADIANRRAHYFKVLN 122 Query: 170 DWSPEDCHTFSGLLARLN 187 DW+ E+ F L+ RLN Sbjct: 123 DWTEEEKEIFGKLVVRLN 140 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,191,763,791 Number of extensions: 46646713 Number of successful extensions: 138804 Number of sequences better than 1.0e-05: 103 Number of HSP's gapped: 138907 Number of HSP's successfully gapped: 103 Length of query: 210 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 80 Effective length of database: 1,835,964,253 Effective search space: 146877140240 Effective search space used: 146877140240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)