BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0004.p (194 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8D0.1 B3K8D0_9BACI Transcription elongation factor 221 3e-56 B1DMK0.1 B1DMK0_9BACL Transcription elongation factor 203 8e-51 C0ZIE0.1 C0ZIE0_BREBN Transcription elongation factor 185 2e-45 B1DIC8.1 B1DIC8_9BACL Transcription elongation factor 183 6e-45 B3K916.1 B3K916_9BACI Transcription elongation factor 177 6e-43 >B3K8D0.1 B3K8D0_9BACI Transcription elongation factor Length = 158 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 110/156 (70%), Positives = 130/156 (83%) Query: 39 EEVFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFMETR 98 EE+ LT+EG KL+EEL DLK VKRKELA R+KLAISYGDLKENSEYHSAK DQ+FMETR Sbjct: 3 EELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFMETR 62 Query: 99 IMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNKISY 158 I+ILEK L A+IVD + + V+VGS V LND+E+ EK+EY+VVGPAEADV +NK+SY Sbjct: 63 IIILEKTLNSARIVDAKDVSSTTVNVGSNVVLNDIEFGEKLEYQVVGPAEADVSNNKVSY 122 Query: 159 ESPLGKELLGKKVGDIISVNAPMGIIQYELLEIKLL 194 ESPLGK L+GK VGD + V APMGI++YELLEIK L Sbjct: 123 ESPLGKALMGKAVGDQVHVEAPMGIVKYELLEIKAL 158 >B1DMK0.1 B1DMK0_9BACL Transcription elongation factor Length = 149 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 100/145 (68%), Positives = 121/145 (83%), Gaps = 2/145 (1%) Query: 36 MSNEEVFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFM 95 M+ E+ LT EGL KLE+EL +LKTVKR ELA RLK+AISYGDLKENSEYHSAK+DQ+FM Sbjct: 1 MAKNEIILTPEGLKKLEDELEELKTVKRSELAHRLKVAISYGDLKENSEYHSAKDDQAFM 60 Query: 96 ETRIMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNK 155 ETRI LEKML A++ +S D +KV VG++V LND+E +EKIEYR+VGPAEADV +NK Sbjct: 61 ETRITQLEKMLKTARV--SNSKDTTKVGVGAIVVLNDIEVAEKIEYRLVGPAEADVFENK 118 Query: 156 ISYESPLGKELLGKKVGDIISVNAP 180 ISYESP+G+ L+GK VGD ISV+AP Sbjct: 119 ISYESPMGQALMGKSVGDTISVDAP 143 >C0ZIE0.1 C0ZIE0_BREBN Transcription elongation factor Length = 158 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/158 (58%), Positives = 120/158 (75%) Query: 36 MSNEEVFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFM 95 MS +EV LT EGL KLE+EL DLKTVKRKE+AAR+K AIS+GD+ ENSEY AK +Q+F+ Sbjct: 1 MSEKEVILTPEGLTKLEQELEDLKTVKRKEVAARIKEAISFGDISENSEYEEAKNEQAFI 60 Query: 96 ETRIMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNK 155 E RI+ LEKML A+I+ +D VSVGS V L D+E+ + ++Y +VG AE+D ++NK Sbjct: 61 EGRILTLEKMLRNARIITNEDVDTGVVSVGSRVKLKDLEFGDVMDYTIVGSAESDPMNNK 120 Query: 156 ISYESPLGKELLGKKVGDIISVNAPMGIIQYELLEIKL 193 IS ESP+G+ LLGK G I+ VN P G+IQYE+L+I L Sbjct: 121 ISNESPVGQALLGKAKGAIVDVNVPAGVIQYEILDINL 158 >B1DIC8.1 B1DIC8_9BACL Transcription elongation factor Length = 158 Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 86/157 (54%), Positives = 124/157 (78%) Query: 36 MSNEEVFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFM 95 MS++E+ LT++GL KLEEEL +LK+VKR+E+A R+K+AI YGD+ ENSEY AK +Q+F+ Sbjct: 1 MSDKEIILTQDGLKKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 96 ETRIMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNK 155 E RI+ LEKML A+I++ +D VS+GS+VT+ D+E+ + +EY +VG AE+D L NK Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSVVTVEDLEFGDTMEYAIVGSAESDPLRNK 120 Query: 156 ISYESPLGKELLGKKVGDIISVNAPMGIIQYELLEIK 192 IS ESP+GK +LGKK G ++ V+ P GIIQY++++IK Sbjct: 121 ISNESPVGKAILGKKRGTVVDVSVPAGIIQYKIVDIK 157 >B3K916.1 B3K916_9BACI Transcription elongation factor Length = 158 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 122/157 (77%) Query: 36 MSNEEVFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFM 95 MS++EV LT++GL KLE+EL +LK+VKR+E+A R+K+AI YGD+ ENSEY AK +Q+F+ Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 96 ETRIMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNK 155 E RI+ LEKML A+I++ ++ V VG+ V + D+E+ + +EY +VG AE+D L+NK Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDVVGVGNTVIVEDLEFGDTMEYTIVGTAESDPLNNK 120 Query: 156 ISYESPLGKELLGKKVGDIISVNAPMGIIQYELLEIK 192 IS ESP+GK ++GK+ G ++ VN P G+IQY++++IK Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDIK 157 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 998,939,294 Number of extensions: 37699178 Number of successful extensions: 114886 Number of sequences better than 1.0e-05: 2014 Number of HSP's gapped: 113620 Number of HSP's successfully gapped: 2014 Length of query: 194 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 66 Effective length of database: 1,854,806,283 Effective search space: 122417214678 Effective search space used: 122417214678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)