BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0003.p (239 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZK11.1 C0ZK11_BREBN Putative uncharacterized protein 255 3e-66 A3IA25.1 A3IA25_9BACI Short chain dehydrogenase EC=1.1.1.- 254 5e-66 B1HMQ9.1 B1HMQ9_LYSSC 3-oxoacyl-[acyl-carrier-protein] reductase... 244 4e-63 C3BGD5.1 C3BGD5_9BACI Short chain dehydrogenase 243 8e-63 A3I724.1 A3I724_9BACI Short chain dehydrogenase EC=1.1.1.- 243 1e-62 >C0ZK11.1 C0ZK11_BREBN Putative uncharacterized protein Length = 237 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 125/205 (60%), Positives = 148/205 (72%), Gaps = 2/205 (0%) Query: 35 SRSAQKLEQXXXXXXXXXXXXTYTLDITSEAQVQSLFAELGAFDHLVITAAETSGGPFLT 94 SRS +KL++ YTLDIT E QVQ+ F ++G FDHLV++AAETSGG FL Sbjct: 35 SRSEEKLQKAKESLGSKAS--AYTLDITDEQQVQAFFEKVGTFDHLVVSAAETSGGSFLQ 92 Query: 95 TATRAARQLMDNKFWGQYYAAKYAAPHLNPHGSITLFSGVVAFKAMTXXXXXXXXXXXXX 154 T T AR+L DNKFWGQYYAAKY AP ++ +GSITLFSGVVA+KAM Sbjct: 93 TDTAQARKLFDNKFWGQYYAAKYGAPKISTNGSITLFSGVVAYKAMIGSSALGAVNAAVS 152 Query: 155 XXXQTLALELAPLRVNTVSPGIIDTPSRAGMAEEARSAFYSSVAAKLPVKRVGTASDVAE 214 QTLALELAP+RVN VSPGIIDTPSR+ M E+ R FY+++A KLPVKRVG A DVA+ Sbjct: 153 NLGQTLALELAPIRVNIVSPGIIDTPSRSKMPEDVRENFYATLADKLPVKRVGQAKDVAQ 212 Query: 215 GVLYLIRNGFVTGTVLHVEGGHTLI 239 VLYL++N FVTGTVLHVEGGH L+ Sbjct: 213 SVLYLLQNSFVTGTVLHVEGGHILL 237 >A3IA25.1 A3IA25_9BACI Short chain dehydrogenase EC=1.1.1.- Length = 237 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/182 (66%), Positives = 140/182 (76%) Query: 57 YTLDITSEAQVQSLFAELGAFDHLVITAAETSGGPFLTTATRAARQLMDNKFWGQYYAAK 116 YTLD T E QVQS F ++G FDHLV++AAETSGG FL T T AR+L +NKFWGQYYAAK Sbjct: 55 YTLDTTQEQQVQSFFEKIGQFDHLVVSAAETSGGSFLQTDTAQARKLFENKFWGQYYAAK 114 Query: 117 YAAPHLNPHGSITLFSGVVAFKAMTXXXXXXXXXXXXXXXXQTLALELAPLRVNTVSPGI 176 Y A + P+GSITLFSGVVA+K+M QTLALELAP+RVN VSPGI Sbjct: 115 YGASKILPNGSITLFSGVVAYKSMVGSAILGAVNAAISNLGQTLALELAPIRVNIVSPGI 174 Query: 177 IDTPSRAGMAEEARSAFYSSVAAKLPVKRVGTASDVAEGVLYLIRNGFVTGTVLHVEGGH 236 IDTPSR+ MAEEAR+ FY++V KLPVKR+G A DVA+ VLYL++NGFVTGTVLHVEGGH Sbjct: 175 IDTPSRSKMAEEARNNFYNAVENKLPVKRIGRAEDVAQSVLYLLQNGFVTGTVLHVEGGH 234 Query: 237 TL 238 L Sbjct: 235 IL 236 >B1HMQ9.1 B1HMQ9_LYSSC 3-oxoacyl-[acyl-carrier-protein] reductase EC=1.1.1.100 Length = 237 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 116/182 (63%), Positives = 136/182 (74%) Query: 57 YTLDITSEAQVQSLFAELGAFDHLVITAAETSGGPFLTTATRAARQLMDNKFWGQYYAAK 116 Y LD T E QV S F ++G FDHLV++AAETSGG FL T+T ARQL +NKFWGQYYAAK Sbjct: 55 YILDTTQEQQVVSFFEKVGPFDHLVVSAAETSGGSFLQTSTAQARQLFENKFWGQYYAAK 114 Query: 117 YAAPHLNPHGSITLFSGVVAFKAMTXXXXXXXXXXXXXXXXQTLALELAPLRVNTVSPGI 176 Y A ++ P+GSITLFSGVVA+K+M QTLALELAP+RVN +SPGI Sbjct: 115 YGALNILPNGSITLFSGVVAYKSMIGSANLGAVNAAVSNLGQTLALELAPIRVNIISPGI 174 Query: 177 IDTPSRAGMAEEARSAFYSSVAAKLPVKRVGTASDVAEGVLYLIRNGFVTGTVLHVEGGH 236 IDTPSR M EE R+ FY+SV KLPVKR+G A DVA+ VLYL++N FVTGT+LHVEGGH Sbjct: 175 IDTPSRNKMPEEVRNNFYASVENKLPVKRIGRAEDVAQSVLYLLKNSFVTGTILHVEGGH 234 Query: 237 TL 238 L Sbjct: 235 IL 236 >C3BGD5.1 C3BGD5_9BACI Short chain dehydrogenase Length = 237 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 139/205 (67%), Gaps = 2/205 (0%) Query: 35 SRSAQKLEQXXXXXXXXXXXXTYTLDITSEAQVQSLFAELGAFDHLVITAAETSGGPFLT 94 SRS KL++ TYTLDIT+E QVQS F E+ HLVITAAET GG FL Sbjct: 35 SRSEDKLKEAQKVLAGNVT--TYTLDITNEQQVQSFFEEINTIHHLVITAAETFGGAFLD 92 Query: 95 TATRAARQLMDNKFWGQYYAAKYAAPHLNPHGSITLFSGVVAFKAMTXXXXXXXXXXXXX 154 T RQL +NKFWGQ+YAAKY AP + GSITLFSGVVA+K M Sbjct: 93 TEVSKTRQLFENKFWGQFYAAKYGAPKITKDGSITLFSGVVAYKTMAGSATLGAVNAAVS 152 Query: 155 XXXQTLALELAPLRVNTVSPGIIDTPSRAGMAEEARSAFYSSVAAKLPVKRVGTASDVAE 214 +TLALELAP+RVN VSPGIIDTPSR+ M +AR FY +A KLPVKRVG A DVA+ Sbjct: 153 NLGETLALELAPIRVNIVSPGIIDTPSRSKMPLKARDKFYKEIANKLPVKRVGQAKDVAD 212 Query: 215 GVLYLIRNGFVTGTVLHVEGGHTLI 239 GVLYL++N FVTGT LHVEGGHTLI Sbjct: 213 GVLYLMQNQFVTGTTLHVEGGHTLI 237 >A3I724.1 A3I724_9BACI Short chain dehydrogenase EC=1.1.1.- Length = 237 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/204 (58%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 35 SRSAQKLEQXXXXXXXXXXXXTYTLDITSEAQVQSLFAELGAFDHLVITAAETSGGPFLT 94 SRS KL + YTLD T E QV S F ++G FDHLV++AAETSGG F+ Sbjct: 35 SRSEDKLRKAKEQLGVKAI--AYTLDTTQEQQVVSFFEKVGPFDHLVVSAAETSGGSFIQ 92 Query: 95 TATRAARQLMDNKFWGQYYAAKYAAPHLNPHGSITLFSGVVAFKAMTXXXXXXXXXXXXX 154 T+T ARQL +NKFWGQYYAAKY A + P+GSITLFSGVVA+K+M Sbjct: 93 TSTVQARQLFENKFWGQYYAAKYGALKILPNGSITLFSGVVAYKSMVGSATLGAVNAAVS 152 Query: 155 XXXQTLALELAPLRVNTVSPGIIDTPSRAGMAEEARSAFYSSVAAKLPVKRVGTASDVAE 214 QTLALELAP+RVN VSPGIIDTPSR M EE R+ FY+SV KLPVKR+G DVA+ Sbjct: 153 NLGQTLALELAPIRVNIVSPGIIDTPSRNKMPEEIRNNFYASVENKLPVKRIGRVEDVAQ 212 Query: 215 GVLYLIRNGFVTGTVLHVEGGHTL 238 +LYL++N FVTGT+LHVEGGH L Sbjct: 213 SILYLLQNSFVTGTILHVEGGHIL 236 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 948,710,902 Number of extensions: 29578621 Number of successful extensions: 96067 Number of sequences better than 1.0e-05: 1556 Number of HSP's gapped: 100508 Number of HSP's successfully gapped: 1559 Length of query: 239 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 107 Effective length of database: 1,817,122,223 Effective search space: 194432077861 Effective search space used: 194432077861 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)