BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0002.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1HMR0.1 B1HMR0_LYSSC Putative HTH-type transcriptional regulator     187   2e-46
C3AZV6.1 C3AZV6_BACMY Transcriptional regulator, HxlR                 187   4e-46
C3AHZ6.1 C3AHZ6_BACMY Transcriptional regulator, HxlR                 187   4e-46
A3IA27.1 A3IA27_9BACI Transcriptional regulator, MarR family pro...   186   7e-46
C2SFY3.1 C2SFY3_BACCE Transcriptional regulator, HxlR                 184   2e-45

>B1HMR0.1 B1HMR0_LYSSC Putative HTH-type transcriptional regulator
          Length = 112

 Score =  187 bits (476), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 102/112 (91%)

Query: 1   MDNTEPVILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPK 60
           M+  EPV+LTKGTPGE CPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLL+S++GISPK
Sbjct: 1   MNVIEPVVLTKGTPGETCPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLKSMDGISPK 60

Query: 61  TLALRLRELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYGLAL 112
           TL+LRL+ LE  GIL R VYPEVPPRVEYTLTKKG+ LEGIFIELKR+GL L
Sbjct: 61  TLSLRLKLLEDQGILERKVYPEVPPRVEYTLTKKGKGLEGIFIELKRFGLNL 112


>C3AZV6.1 C3AZV6_BACMY Transcriptional regulator, HxlR
          Length = 117

 Score =  187 bits (474), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 102/112 (91%)

Query: 1   MDNTEPVILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPK 60
           M N +P++LTKG+PG  CPIAKTLDVIGTKWTFLIIRDLLIEGT+RFSDL +S++GISPK
Sbjct: 6   MSNIDPIVLTKGSPGIPCPIAKTLDVIGTKWTFLIIRDLLIEGTLRFSDLQKSMDGISPK 65

Query: 61  TLALRLRELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYGLAL 112
           TL+LRL+ELES GI+ R VYPEVPPRVEYTLT KG+QLEGIFIELKR+GL L
Sbjct: 66  TLSLRLKELESQGIVTRKVYPEVPPRVEYTLTDKGKQLEGIFIELKRFGLTL 117


>C3AHZ6.1 C3AHZ6_BACMY Transcriptional regulator, HxlR
          Length = 117

 Score =  187 bits (474), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 102/112 (91%)

Query: 1   MDNTEPVILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPK 60
           M N +P++LTKG+PG  CPIAKTLDVIGTKWTFLIIRDLLIEGT+RFSDL +S++GISPK
Sbjct: 6   MSNIDPIVLTKGSPGIPCPIAKTLDVIGTKWTFLIIRDLLIEGTLRFSDLQKSMDGISPK 65

Query: 61  TLALRLRELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYGLAL 112
           TL+LRL+ELES GI+ R VYPEVPPRVEYTLT KG+QLEGIFIELKR+GL L
Sbjct: 66  TLSLRLKELESQGIVTRKVYPEVPPRVEYTLTDKGKQLEGIFIELKRFGLTL 117


>A3IA27.1 A3IA27_9BACI Transcriptional regulator, MarR family protein
          Length = 112

 Score =  186 bits (471), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 99/112 (88%)

Query: 1   MDNTEPVILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPK 60
           M   EPVILTKG P E CPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLL+S+ GISPK
Sbjct: 1   MSVIEPVILTKGAPDETCPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLKSMNGISPK 60

Query: 61  TLALRLRELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYGLAL 112
           TL+LRL+ LE HGIL + V+PEVPPRVEYTLT KG+QLEGIFIELKR+GL L
Sbjct: 61  TLSLRLKTLEDHGILNKKVFPEVPPRVEYTLTDKGKQLEGIFIELKRFGLNL 112


>C2SFY3.1 C2SFY3_BACCE Transcriptional regulator, HxlR
          Length = 117

 Score =  184 bits (467), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 101/112 (90%)

Query: 1   MDNTEPVILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPK 60
           M N +PV+LTKG PG  CPIAKTLDVI TKWTFLIIRDLLIEGT+RFSDL +S++GISPK
Sbjct: 6   MSNIDPVVLTKGLPGIPCPIAKTLDVISTKWTFLIIRDLLIEGTLRFSDLQKSMDGISPK 65

Query: 61  TLALRLRELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYGLAL 112
           TL+LRL+ELE+ GI+ R VYPEVPPRVEYTLT KG+QLEGIFIELKR+GL+L
Sbjct: 66  TLSLRLKELEAQGIITRKVYPEVPPRVEYTLTDKGKQLEGIFIELKRFGLSL 117


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 653,256,368
Number of extensions: 22619015
Number of successful extensions: 61040
Number of sequences better than 1.0e-05: 2865
Number of HSP's gapped: 59538
Number of HSP's successfully gapped: 2866
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)