BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0002.p
         (49 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A5KRL0.1 A5KRL0_9FIRM Putative uncharacterized protein (Fragment)      71   3e-11

>A5KRL0.1 A5KRL0_9FIRM Putative uncharacterized protein (Fragment)
          Length = 79

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1  LRDLTQHLTTRADDNHAPPVSTFPEGHLMHLCFVSWMSRPGKVLRVASN 49
          +RDLTQHLTTRADDNHAPPVS  P+G   H   VS MSR GKVLRVASN
Sbjct: 32 VRDLTQHLTTRADDNHAPPVSAAPKGR-THYRPVSGMSRAGKVLRVASN 79


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.134    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 315,938,757
Number of extensions: 7426103
Number of successful extensions: 15488
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 15487
Number of HSP's successfully gapped: 1
Length of query: 49
Length of database: 3,060,696,203
Length adjustment: 22
Effective length of query: 27
Effective length of database: 2,853,433,873
Effective search space: 77042714571
Effective search space used: 77042714571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)