BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0015.p
         (54 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8W8.1 B3K8W8_9BACI 3D domain protein                               100   6e-20
B1DIJ2.1 B1DIJ2_9BACL 3D domain protein                                79   2e-13
C0ZHC4.1 C0ZHC4_BREBN Putative uncharacterized protein yabE            76   1e-12
C2HJW6.1 C2HJW6_PEPMA N-acetylmuramoyl-L-alanine amidase               59   1e-07
B0S0N7.1 B0S0N7_FINM2 N-acetylmuramoyl-L-alanine amidase               59   2e-07

>B3K8W8.1 B3K8W8_9BACI 3D domain protein
          Length = 395

 Score =  100 bits (248), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 51/55 (92%), Gaps = 1/55 (1%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKS-RTIYVIGPVKPELN 54
           VYIEG+GFRRAEDTGGAIKGNK+DVYY+SL  A NFGRKS RT+YVIGPVKPELN
Sbjct: 341 VYIEGIGFRRAEDTGGAIKGNKIDVYYDSLKSAMNFGRKSGRTVYVIGPVKPELN 395


>B1DIJ2.1 B1DIJ2_9BACL 3D domain protein
          Length = 377

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 1/52 (1%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKS-RTIYVIGPVKP 51
           VYIEG+GFRRAEDTG AI GNK+DVY++S S+A  FGRK   T+YV+GP KP
Sbjct: 323 VYIEGIGFRRAEDTGSAINGNKIDVYFDSTSYANKFGRKKGYTVYVLGPTKP 374


>C0ZHC4.1 C0ZHC4_BREBN Putative uncharacterized protein yabE
          Length = 365

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 45/52 (86%), Gaps = 1/52 (1%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRK-SRTIYVIGPVKP 51
           VYIEG+G+RRAEDTGGA+KG K+DV+  + S ARNFGRK ++T+Y+IGP KP
Sbjct: 314 VYIEGVGYRRAEDTGGAMKGGKIDVFVGTESEARNFGRKRNKTVYIIGPQKP 365


>C2HJW6.1 C2HJW6_PEPMA N-acetylmuramoyl-L-alanine amidase
          Length = 572

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
           VY+EG GF  AEDTGGAIKGNK+DV  ++ + +RN+G ++  IY++
Sbjct: 527 VYVEGYGFATAEDTGGAIKGNKIDVVMDTKAQSRNWGVRNVKIYIL 572


>B0S0N7.1 B0S0N7_FINM2 N-acetylmuramoyl-L-alanine amidase
          Length = 571

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
           VY+EG GF  AEDTGGAIKGNK+DV  ++ + +RN+G ++  IY++
Sbjct: 526 VYVEGYGFATAEDTGGAIKGNKIDVVMDTNAQSRNWGVRNVKIYIL 571


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 343,919,934
Number of extensions: 10286495
Number of successful extensions: 18585
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 18666
Number of HSP's successfully gapped: 50
Length of query: 54
Length of database: 3,060,696,203
Length adjustment: 27
Effective length of query: 27
Effective length of database: 2,806,328,798
Effective search space: 75770877546
Effective search space used: 75770877546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)