BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0013.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8W9.1 B3K8W9_9BACI Primase/topoisomerase like protein 290 4e-77 B1DIJ1.1 B1DIJ1_9BACL Primase/topoisomerase like protein 243 4e-63 Q9KGK5.1 Q9KGK5_BACHD BH0056 protein 222 1e-56 C3BEG2.1 C3BEG2_9BACI Putative uncharacterized protein 206 8e-52 C3AG37.1 C3AG37_BACMY Putative uncharacterized protein 206 8e-52 >B3K8W9.1 B3K8W9_9BACI Primase/topoisomerase like protein Length = 181 Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 138/181 (76%), Positives = 159/181 (87%) Query: 1 MIKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAG 60 MIKE+IVVEG+ DTVAIKRAVEADTIETGGSA++++++ +IALA ERRGVIILTDPDHAG Sbjct: 1 MIKEVIVVEGRDDTVAIKRAVEADTIETGGSAINKQILKRIALAQERRGVIILTDPDHAG 60 Query: 61 ERIRKIVSSKVPGCKHAFIPEKDATRKGDIGVENASPEAIRHALEHVHTSFEGAPALIGM 120 ERIRKIV VPGCKHAFIPE DATRKGDIGVENASPEAIR ALE VHTSFEG +LI + Sbjct: 61 ERIRKIVDQGVPGCKHAFIPEADATRKGDIGVENASPEAIRRALERVHTSFEGGESLISL 120 Query: 121 EDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQIDQGG 180 ED++ AG+ HP AA RRMA+GNLLGIGYCN KQ +KRLAMF I+REEF ALAQ+++GG Sbjct: 121 EDMLEAGLSAHPEAAARRMAMGNLLGIGYCNSKQFHKRLAMFQISREEFLAALAQLEEGG 180 Query: 181 I 181 + Sbjct: 181 V 181 >B1DIJ1.1 B1DIJ1_9BACL Primase/topoisomerase like protein Length = 181 Score = 243 bits (621), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/179 (66%), Positives = 140/179 (78%) Query: 1 MIKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAG 60 MIKE+IVVEGK DTVA+KRAVEADTIET GSAV +V+ +I LAMERRGVII TDPDHAG Sbjct: 1 MIKEIIVVEGKDDTVAVKRAVEADTIETNGSAVGEEVLRRIELAMERRGVIIFTDPDHAG 60 Query: 61 ERIRKIVSSKVPGCKHAFIPEKDATRKGDIGVENASPEAIRHALEHVHTSFEGAPALIGM 120 ERIRKIV+ +VPGCKHAF+P++ A KGDIG+ENASPEAIR AL + T I Sbjct: 61 ERIRKIVARRVPGCKHAFLPQEKAMYKGDIGIENASPEAIRQALSELRTEMVAGEGDITW 120 Query: 121 EDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQIDQG 179 EDLM AG++VHP AA RR+ +G LLGIGY NGKQ +KR F I+REEF+ AL ++QG Sbjct: 121 EDLMEAGLIVHPDAANRRLQMGKLLGIGYANGKQFFKRCTSFRISREEFAEALRTMEQG 179 >Q9KGK5.1 Q9KGK5_BACHD BH0056 protein Length = 185 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/181 (62%), Positives = 138/181 (76%), Gaps = 2/181 (1%) Query: 2 IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61 IKE+IVVEG+ DT+AI+RAV ADTIET GSAV+ + + +IALA +RRGVIILTDPD+ GE Sbjct: 3 IKEMIVVEGRDDTIAIQRAVNADTIETNGSAVNEETLKRIALAQQRRGVIILTDPDYPGE 62 Query: 62 RIRKIVSSKVPGCKHAFIPEKDATRKG--DIGVENASPEAIRHALEHVHTSFEGAPALIG 119 RIR+IVS +VPGCKHAF+P+K A K D+GVENA+PEAIRHALE VH + E +I Sbjct: 63 RIRRIVSERVPGCKHAFLPKKAALSKNGDDLGVENAAPEAIRHALEKVHEAMEDPLEVIS 122 Query: 120 MEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQIDQG 179 +DL AG+M A +RR LG LLGIGY NGK LYKRL F IT+ EF+ A+AQI + Sbjct: 123 RQDLFDAGLMAGADAKKRREQLGILLGIGYANGKTLYKRLKAFQITKREFAEAIAQIVEE 182 Query: 180 G 180 G Sbjct: 183 G 183 >C3BEG2.1 C3BEG2_9BACI Putative uncharacterized protein Length = 189 Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 103/179 (57%), Positives = 133/179 (74%), Gaps = 2/179 (1%) Query: 2 IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61 IKE+IVVEGK DTVAIKRAV+ADTIET GSA+ VI ++ LA ++RGVIILTDPD+ GE Sbjct: 7 IKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGEHVIEQVKLAQQKRGVIILTDPDYPGE 66 Query: 62 RIRKIVSSKVPGCKHAFIPEKD--ATRKGDIGVENASPEAIRHALEHVHTSFEGAPALIG 119 RIRKI+S KVPGCKHAF+P+++ A RK +G+E+AS E+IR ALE+VH E + I Sbjct: 67 RIRKIISEKVPGCKHAFLPKEEALAKRKKGVGIEHASNESIRRALENVHEEMEAYTSEIS 126 Query: 120 MEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQIDQ 178 DL+ AG++ +A RR +G LL IGY N KQL+KRL MF +++E F+ A Q+ Q Sbjct: 127 WSDLVDAGLVGGEQAKSRREKMGKLLKIGYTNAKQLHKRLQMFQVSKEAFAEAYKQVLQ 185 >C3AG37.1 C3AG37_BACMY Putative uncharacterized protein Length = 189 Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 103/179 (57%), Positives = 133/179 (74%), Gaps = 2/179 (1%) Query: 2 IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61 IKE+IVVEGK DTVAIKRAV+ADTIET GSA+ VI ++ LA ++RGVIILTDPD+ GE Sbjct: 7 IKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGEHVIEQVKLAQQKRGVIILTDPDYPGE 66 Query: 62 RIRKIVSSKVPGCKHAFIPEKD--ATRKGDIGVENASPEAIRHALEHVHTSFEGAPALIG 119 RIRKI+S KVPGCKHAF+P+++ A RK +G+E+AS E+IR ALE+VH E + I Sbjct: 67 RIRKIISEKVPGCKHAFLPKEEALAKRKKGVGIEHASNESIRRALENVHEEMEAYTSEIS 126 Query: 120 MEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQIDQ 178 DL+ AG++ +A RR +G LL IGY N KQL+KRL MF +++E F+ A Q+ Q Sbjct: 127 WSDLVDAGLVGGEQAKSRREKMGKLLKIGYTNAKQLHKRLQMFQVSKEAFAEAYKQVLQ 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,018,952,784 Number of extensions: 39415713 Number of successful extensions: 106216 Number of sequences better than 1.0e-05: 379 Number of HSP's gapped: 105773 Number of HSP's successfully gapped: 379 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)