BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0012.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8X0.1 B3K8X0_9BACI Dimethyladenosine transferase 447 e-124 C0ZHC6.1 C0ZHC6_BREBN Dimethyladenosine transferase EC=2.1.1.- 353 1e-95 A7GJV3.1 KSGA_BACCN Dimethyladenosine transferase EC=2.1.1.- 334 5e-90 A9VN54.1 KSGA_BACWK Dimethyladenosine transferase EC=2.1.1.- 334 6e-90 Q4MI11.1 Q4MI11_BACCE Dimethyladenosine transferase EC=2.1.1.- 333 1e-89 >B3K8X0.1 B3K8X0_9BACI Dimethyladenosine transferase Length = 294 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/293 (77%), Positives = 248/293 (84%) Query: 1 MSGNNNISSPARTKEIIQRYGFSFKKSLGQNFLIDQNILDKIVXXXXXXXXXXXXEIGPG 60 M+ +IS+P RTKEII R+GFSFKKSLGQNFLIDQNIL KIV EIGPG Sbjct: 1 MNRIEDISTPRRTKEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPG 60 Query: 61 IGALTERLAATAGAVTAVEIDRRLIPILRDVLASYPHVTIRNDDVLKVNLQELFAEDFAA 120 IGALTE+LA TAG VTAVEID+RLIPILR+VL Y +V + + DVLKV+L ELF +DFA Sbjct: 61 IGALTEKLAQTAGTVTAVEIDQRLIPILREVLEPYGNVRVHHGDVLKVDLHELFRQDFAD 120 Query: 121 VERVSVVANLPYYVTTPILMKLLEEKLPLDNIVVMIQKEVAERMAASPGGKEYGSLSIAV 180 V +VSVVANLPYYVTTPILMKLLEEKLPL+NIVVMIQKEVAERMAA+PG K+YGSLSIAV Sbjct: 121 VSKVSVVANLPYYVTTPILMKLLEEKLPLENIVVMIQKEVAERMAAAPGSKDYGSLSIAV 180 Query: 181 QYYSEPELVCIVPRTVFIPQPNVESAVIRLKVRERPPVEVADEKHFFEVVQASFTQRRKT 240 QYYSEP+LVCIVP TVFIPQPNVESAVIRL VRE+PPV V DE+ FFEVVQASF QRRKT Sbjct: 181 QYYSEPKLVCIVPHTVFIPQPNVESAVIRLAVREQPPVRVEDERFFFEVVQASFAQRRKT 240 Query: 241 IANNLKARFFPEEGRERLESLLAAAGIEPSRRGETLSLEEYARLSAVLLAAGI 293 IANNLK+RFFP EGRERLE LL AGIEPSRRGETLS+EEYARLS VL A I Sbjct: 241 IANNLKSRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVLFGANI 293 >C0ZHC6.1 C0ZHC6_BREBN Dimethyladenosine transferase EC=2.1.1.- Length = 297 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 171/292 (58%), Positives = 223/292 (76%) Query: 3 GNNNISSPARTKEIIQRYGFSFKKSLGQNFLIDQNILDKIVXXXXXXXXXXXXEIGPGIG 62 +I++P RTKEI+++YGF+FKKSLGQNFLID NIL IV EIGPGIG Sbjct: 5 AGKDIATPTRTKEILEKYGFAFKKSLGQNFLIDTNILHNIVSEADLTKEKGAIEIGPGIG 64 Query: 63 ALTERLAATAGAVTAVEIDRRLIPILRDVLASYPHVTIRNDDVLKVNLQELFAEDFAAVE 122 ALTE+L A V A+EID+RL+PIL+D L+ Y ++ + + DVL ++L++L E VE Sbjct: 65 ALTEQLGRAAKKVMAIEIDQRLLPILQDTLSPYENIEVVHGDVLGLDLKKLIEEKMTGVE 124 Query: 123 RVSVVANLPYYVTTPILMKLLEEKLPLDNIVVMIQKEVAERMAASPGGKEYGSLSIAVQY 182 ++SVVANLPYYVTTPILMKLLEE+LPL+NIVVMIQKEVAER+AA PG K+YGSLS+A Q+ Sbjct: 125 KLSVVANLPYYVTTPILMKLLEERLPLENIVVMIQKEVAERIAAKPGTKDYGSLSVAAQF 184 Query: 183 YSEPELVCIVPRTVFIPQPNVESAVIRLKVRERPPVEVADEKHFFEVVQASFTQRRKTIA 242 Y++ E+ IVP +VFIP+PNV+SAVIRLKVR+RPPVEV D+ FF VV+ SF QRRKT+ Sbjct: 185 YADTEVAMIVPASVFIPRPNVDSAVIRLKVRDRPPVEVDDQDVFFRVVRCSFAQRRKTLL 244 Query: 243 NNLKARFFPEEGRERLESLLAAAGIEPSRRGETLSLEEYARLSAVLLAAGIV 294 NNL FP+ ++ + +L GI+P+RRGETLSL+E+ARL+ + G++ Sbjct: 245 NNLMNGLFPKTQKDEVIQMLTDIGIDPTRRGETLSLDEFARLANEGMRRGLI 296 >A7GJV3.1 KSGA_BACCN Dimethyladenosine transferase EC=2.1.1.- Length = 292 Score = 334 bits (857), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 177/287 (61%), Positives = 216/287 (75%), Gaps = 3/287 (1%) Query: 5 NNISSPARTKEIIQRYGFSFKKSLGQNFLIDQNILDKIVXXXXXXXXXXXXEIGPGIGAL 64 +I++P RTK+I+++YGFSFKKSLGQNFLID N+L++IV EIGPGIGAL Sbjct: 2 KDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDYAEIGPKGGAIEIGPGIGAL 61 Query: 65 TERLAATAGAVTAVEIDRRLIPILRDVLASYPHVTIRNDDVLKVNLQELFAEDFAAVERV 124 TE+LA A V A EID+RL+PIL + LA Y +VTI N DVLK N+ E+F E F + V Sbjct: 62 TEQLAKRAKKVVAFEIDQRLLPILDETLAPYDNVTIINKDVLKANVHEVFQEQFEEGQDV 121 Query: 125 SVVANLPYYVTTPILMKLLEEKLPLDNIVVMIQKEVAERMAASPGGKEYGSLSIAVQYYS 184 VVANLPYYVTTPIL KLLEEKLP+ VVM+QKEV +R+AA PG K+YGSLSIA+QYY+ Sbjct: 122 MVVANLPYYVTTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKDYGSLSIAIQYYT 181 Query: 185 EPELVCIVPRTVFIPQPNVESAVIRLKVRERPPVEVADEKHFFEVVQASFTQRRKTIANN 244 E E V VPRTVF+PQPNV+S+VIRL R +P VEV DEK FFEVV+ASF QRRKT+ NN Sbjct: 182 EVETVMTVPRTVFVPQPNVDSSVIRLLKRPKPIVEVIDEKFFFEVVRASFAQRRKTLMNN 241 Query: 245 LKARF--FPEEGRERLESLLAAAGIEPSRRGETLSLEEYARLSAVLL 289 L FP++ +E LE +L GI+P RRGETLS+EE+A LS L+ Sbjct: 242 LSNNLNDFPKD-KELLERILTEIGIDPKRRGETLSIEEFAMLSNALV 287 >A9VN54.1 KSGA_BACWK Dimethyladenosine transferase EC=2.1.1.- Length = 292 Score = 334 bits (856), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 173/287 (60%), Positives = 216/287 (75%), Gaps = 3/287 (1%) Query: 5 NNISSPARTKEIIQRYGFSFKKSLGQNFLIDQNILDKIVXXXXXXXXXXXXEIGPGIGAL 64 +I++P RTK+I+++YGFSFKKSLGQNFLID N+L++IV EIGPGIGAL Sbjct: 2 KDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGAL 61 Query: 65 TERLAATAGAVTAVEIDRRLIPILRDVLASYPHVTIRNDDVLKVNLQELFAEDFAAVERV 124 TE+LA A V A EID+RL+PIL + LA Y +VT+ N DVLK ++ E+F+E F + V Sbjct: 62 TEQLAKRAKKVVAFEIDQRLLPILDETLAPYSNVTVINKDVLKADVHEVFSEQFEEGQDV 121 Query: 125 SVVANLPYYVTTPILMKLLEEKLPLDNIVVMIQKEVAERMAASPGGKEYGSLSIAVQYYS 184 VVANLPYY+TTPIL KLLEEKLP+ VVM+QKEV +R+AA PG KEYGSLSIA+QYY+ Sbjct: 122 MVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYT 181 Query: 185 EPELVCIVPRTVFIPQPNVESAVIRLKVRERPPVEVADEKHFFEVVQASFTQRRKTIANN 244 E E V VPRTVF+PQPNV+SA+IRL R +P VEV DE FFEVV+ASF QRRKT+ NN Sbjct: 182 EVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNN 241 Query: 245 LKARF--FPEEGRERLESLLAAAGIEPSRRGETLSLEEYARLSAVLL 289 L FP++ +E L+ +L GI+P RRGETLS+EE+A LS L+ Sbjct: 242 LSNNLNGFPKD-KELLDRILTEVGIDPKRRGETLSIEEFATLSNALI 287 >Q4MI11.1 Q4MI11_BACCE Dimethyladenosine transferase EC=2.1.1.- Length = 292 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 173/287 (60%), Positives = 216/287 (75%), Gaps = 3/287 (1%) Query: 5 NNISSPARTKEIIQRYGFSFKKSLGQNFLIDQNILDKIVXXXXXXXXXXXXEIGPGIGAL 64 +I++P RTK+I+++YGFSFKKSLGQNFLID N+L++IV EIGPGIGAL Sbjct: 2 KDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGAL 61 Query: 65 TERLAATAGAVTAVEIDRRLIPILRDVLASYPHVTIRNDDVLKVNLQELFAEDFAAVERV 124 TE+LA A V A EID+RL+PIL + LA Y +VT+ N DVLK ++ E+F+E F + V Sbjct: 62 TEQLAKRAKKVVAFEIDQRLLPILDETLAPYGNVTVINKDVLKADVHEVFSEQFEEGQDV 121 Query: 125 SVVANLPYYVTTPILMKLLEEKLPLDNIVVMIQKEVAERMAASPGGKEYGSLSIAVQYYS 184 VVANLPYY+TTPIL KLLEEKLP+ VVM+QKEV +R+AA PG KEYGSLSIA+QYY+ Sbjct: 122 MVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYT 181 Query: 185 EPELVCIVPRTVFIPQPNVESAVIRLKVRERPPVEVADEKHFFEVVQASFTQRRKTIANN 244 E E V VPRTVF+PQPNV+SA+IRL R +P VEV DE FFEVV+ASF QRRKT+ NN Sbjct: 182 EVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNN 241 Query: 245 LKARF--FPEEGRERLESLLAAAGIEPSRRGETLSLEEYARLSAVLL 289 L FP++ +E L+ +L GI+P RRGETLS+EE+A LS L+ Sbjct: 242 LSNNLNGFPKD-KELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,530,184,608 Number of extensions: 57089367 Number of successful extensions: 166061 Number of sequences better than 1.0e-05: 2131 Number of HSP's gapped: 162052 Number of HSP's successfully gapped: 2138 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)